Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_O04
(617 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 34 0.26
sp|Q48262|NIXA_HELPY High-affinity nickel-transport protein... 33 0.45
sp|Q9CI63|P2IN_LACLA Prophage ps2 probable integrase (Int-TnX) 33 0.59
sp|Q9ZM74|NIXA_HELPJ High-affinity nickel-transport protein... 33 0.59
sp|P19879|MIME_BOVIN Mimecan precursor (Osteoglycin) [Conta... 33 0.76
sp|P20774|MIME_HUMAN Mimecan precursor (Osteoglycin) (Osteo... 32 1.00
sp|P42073|REF2_YEAST RNA end formation protein 2 31 2.9
sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and ... 31 2.9
sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination... 30 3.8
sp|Q8TT60|HEM1_METAC Glutamyl-tRNA reductase (GluTR) 30 5.0
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 34.3 bits (77), Expect = 0.26
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 315 LDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSRGISFEKL 494
LD +EQ N TV+ +L+L KD KLE + ++ + K + D+ + +EK
Sbjct: 178 LDRIEQDYN-NFKKTVEEKRARVLELKKDKEKLEDE---IKNLEKRIKDIKDQFDEYEKK 233
Query: 495 RNKYFK 512
RN+Y K
Sbjct: 234 RNQYLK 239
>sp|Q48262|NIXA_HELPY High-affinity nickel-transport protein nixA
Length = 331
Score = 33.5 bits (75), Expect = 0.45
Identities = 24/77 (31%), Positives = 40/77 (51%)
Frame = +3
Query: 288 PLTNIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLS 467
P+ +GG++ TL +F + GLLN I+ L DLLK+ + +S+ N+
Sbjct: 102 PMLEEIGGVVGTLVS----GLFLLIIGLLNAIILL--DLLKIFKKSHSNESLSQQQNEEI 155
Query: 468 SRGISFEKLRNKYFKDL 518
R ++ L N++FK L
Sbjct: 156 ERLLTSRGLLNRFFKPL 172
>sp|Q9CI63|P2IN_LACLA Prophage ps2 probable integrase (Int-TnX)
Length = 382
Score = 33.1 bits (74), Expect = 0.59
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +3
Query: 363 KGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSRGISFEKLRNKYFKDLDLEAVV 536
K LN I D DL +E +PA+ ++ K + + EK++NKY + +L+A++
Sbjct: 131 KSTLNLIFDYAVDLEYIEYNPARKAKLPKKIQTVKD----LEKIQNKYLEQNELKALL 184
>sp|Q9ZM74|NIXA_HELPJ High-affinity nickel-transport protein nixA
Length = 331
Score = 33.1 bits (74), Expect = 0.59
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +3
Query: 288 PLTNIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLS 467
P+ +GG++ TL +F + GLLN I+ + DLLK+ + +S+ N+
Sbjct: 102 PMLEEIGGVVGTLVS----GLFLLIIGLLNAIILI--DLLKIFKKSHSNESLSRQQNEEI 155
Query: 468 SRGISFEKLRNKYFKDL 518
R ++ L N++FK L
Sbjct: 156 ERLLTSRGLLNRFFKPL 172
>sp|P19879|MIME_BOVIN Mimecan precursor (Osteoglycin) [Contains: Corneal keratan sulfate
proteoglycan 25 core protein (KSPG25 protein);
Osteoinductive factor (OIF)]
Length = 299
Score = 32.7 bits (73), Expect = 0.76
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +3
Query: 297 NIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSRG 476
+ G L++ +E FS + LL E+ LLKL P KL + N + SRG
Sbjct: 150 DFTGNLIEDIED----GTFSKLS-LLEELTLAENQLLKLPVLPPKLTLFNAKYNKIKSRG 204
Query: 477 I---SFEKLRNKYFKDLDLEAV 533
I +F+KL N F LD A+
Sbjct: 205 IKANTFKKLHNLSFLYLDHNAL 226
>sp|P20774|MIME_HUMAN Mimecan precursor (Osteoglycin) (Osteoinductive factor) (OIF)
Length = 298
Score = 32.3 bits (72), Expect = 1.00
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +3
Query: 297 NIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSRG 476
+ G L++ +E FS + LL E+ LLKL P KL + N + SRG
Sbjct: 149 DFTGNLIEDIED----GTFSKLS-LLEELSLAENQLLKLPVLPPKLTLFNAKYNKIKSRG 203
Query: 477 I---SFEKLRNKYFKDLDLEAV 533
I +F+KL N F LD A+
Sbjct: 204 IKANAFKKLNNLTFLYLDHNAL 225
>sp|P42073|REF2_YEAST RNA end formation protein 2
Length = 533
Score = 30.8 bits (68), Expect = 2.9
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -3
Query: 312 DLQLYXXXXXXXXIYPNQVIRLFHLKVHLEVHPKVH----HYFLRLLPKLHP 169
D+QLY Y NQ+I+L H K H P + +F+ LPK P
Sbjct: 76 DIQLYSGLKSMYLDYLNQLIKLKHEKQHHSTPPIANDVSLDFFVNQLPKFSP 127
>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
only protein 29)
Length = 598
Score = 30.8 bits (68), Expect = 2.9
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 352 NILRGIVCSSVSKRPPTIFVSGNPD 278
N+LR C ++S PP + VSGN D
Sbjct: 430 NVLRDFTCVNLSDSPPNLMVSGNMD 454
>sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination protein N)
Length = 565
Score = 30.4 bits (67), Expect = 3.8
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 369 LLNEILDLVKDLL-KLESDPAKLQRISKLLNDLSSRGISFEKLRNKYFKDLDLEAVVKAN 545
LL E + ++D L KLE DP +L+ I L++L +KL+ KY +D +
Sbjct: 277 LLEEAMFTLRDYLDKLEFDPTRLEMIESRLHEL-------QKLKRKYGDSVDAIVEYAST 329
Query: 546 VDVKTD 563
++ + D
Sbjct: 330 IEEQLD 335
>sp|Q8TT60|HEM1_METAC Glutamyl-tRNA reductase (GluTR)
Length = 460
Score = 30.0 bits (66), Expect = 5.0
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 378 EILDLVKDLLKLESDPAKLQRISKLLNDLSSRGISFEKLRNKYFKDLDLEAVVKANVDVK 557
E LD+V + LE D AKL++I++ + G + E+ K + +AVVK VK
Sbjct: 400 EFLDVVSRVFCLEKDKAKLEKINQAKFEQIEPGCAKEQAAVKEQTAVKEQAVVKEQAAVK 459
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,595,938
Number of Sequences: 369166
Number of extensions: 646457
Number of successful extensions: 2407
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2406
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)