Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_M14
(404 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 34 0.097
sp|Q9CI63|P2IN_LACLA Prophage ps2 probable integrase (Int-TnX) 33 0.22
sp|P19879|MIME_BOVIN Mimecan precursor (Osteoglycin) [Conta... 32 0.63
sp|P20774|MIME_HUMAN Mimecan precursor (Osteoglycin) (Osteo... 31 0.82
sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and ... 31 1.1
sp|Q8TT60|HEM1_METAC Glutamyl-tRNA reductase (GluTR) 30 1.4
sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination... 30 1.4
sp|Q48262|NIXA_HELPY High-affinity nickel-transport protein... 30 1.4
sp|Q9ZM74|NIXA_HELPJ High-affinity nickel-transport protein... 30 1.8
sp|P04933|MSP1_PLAFW Merozoite surface protein 1 precursor ... 30 2.4
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 34.3 bits (77), Expect = 0.097
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +1
Query: 103 LDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKGISFEKL 282
LD +EQ N TV+ +L+L KD KLE + ++ + K + D+ + +EK
Sbjct: 178 LDRIEQDYN-NFKKTVEEKRARVLELKKDKEKLEDE---IKNLEKRIKDIKDQFDEYEKK 233
Query: 283 RNKYFK 300
RN+Y K
Sbjct: 234 RNQYLK 239
>sp|Q9CI63|P2IN_LACLA Prophage ps2 probable integrase (Int-TnX)
Length = 382
Score = 33.1 bits (74), Expect = 0.22
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +1
Query: 151 KGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKGISFEKLRNKYFKDLDLEAVV 324
K LN I D DL +E +PA+ ++ K + + EK++NKY + +L+A++
Sbjct: 131 KSTLNLIFDYAVDLEYIEYNPARKAKLPKKIQTVKD----LEKIQNKYLEQNELKALL 184
>sp|P19879|MIME_BOVIN Mimecan precursor (Osteoglycin) [Contains: Corneal keratan sulfate
proteoglycan 25 core protein (KSPG25 protein);
Osteoinductive factor (OIF)]
Length = 299
Score = 31.6 bits (70), Expect = 0.63
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +1
Query: 85 NIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKG 264
+ G L++ +E FS + LL E+ LLKL P KL + N + S+G
Sbjct: 150 DFTGNLIEDIED----GTFSKLS-LLEELTLAENQLLKLPVLPPKLTLFNAKYNKIKSRG 204
Query: 265 I---SFEKLRNKYFKDLDLEAV 321
I +F+KL N F LD A+
Sbjct: 205 IKANTFKKLHNLSFLYLDHNAL 226
>sp|P20774|MIME_HUMAN Mimecan precursor (Osteoglycin) (Osteoinductive factor) (OIF)
Length = 298
Score = 31.2 bits (69), Expect = 0.82
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +1
Query: 85 NIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKG 264
+ G L++ +E FS + LL E+ LLKL P KL + N + S+G
Sbjct: 149 DFTGNLIEDIED----GTFSKLS-LLEELSLAENQLLKLPVLPPKLTLFNAKYNKIKSRG 203
Query: 265 I---SFEKLRNKYFKDLDLEAV 321
I +F+KL N F LD A+
Sbjct: 204 IKANAFKKLNNLTFLYLDHNAL 225
>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
only protein 29)
Length = 598
Score = 30.8 bits (68), Expect = 1.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 140 NILRGIVCSSVSKRPPTIFVSGNPD 66
N+LR C ++S PP + VSGN D
Sbjct: 430 NVLRDFTCVNLSDSPPNLMVSGNMD 454
>sp|Q8TT60|HEM1_METAC Glutamyl-tRNA reductase (GluTR)
Length = 460
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +1
Query: 166 EILDLVKDLLKLESDPAKLQRISKLLNDLSSKGISFEKLRNKYFKDLDLEAVVKANVDVK 345
E LD+V + LE D AKL++I++ + G + E+ K + +AVVK VK
Sbjct: 400 EFLDVVSRVFCLEKDKAKLEKINQAKFEQIEPGCAKEQAAVKEQTAVKEQAVVKEQAAVK 459
>sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination protein N)
Length = 565
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 157 LLNEILDLVKDLL-KLESDPAKLQRISKLLNDLSSKGISFEKLRNKYFKDLDLEAVVKAN 333
LL E + ++D L KLE DP +L+ I L++L +KL+ KY +D +
Sbjct: 277 LLEEAMFTLRDYLDKLEFDPTRLEMIESRLHEL-------QKLKRKYGDSVDAIVEYAST 329
Query: 334 VDVKTD 351
++ + D
Sbjct: 330 IEEQLD 335
>sp|Q48262|NIXA_HELPY High-affinity nickel-transport protein nixA
Length = 331
Score = 30.4 bits (67), Expect = 1.4
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 91 VGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKGIS 270
+GG++ TL +F + GLLN I+ L DLLK+ + +S+ N+ + ++
Sbjct: 107 IGGVVGTLVS----GLFLLIIGLLNAIILL--DLLKIFKKSHSNESLSQQQNEEIERLLT 160
Query: 271 FEKLRNKYFKDL 306
L N++FK L
Sbjct: 161 SRGLLNRFFKPL 172
>sp|Q9ZM74|NIXA_HELPJ High-affinity nickel-transport protein nixA
Length = 331
Score = 30.0 bits (66), Expect = 1.8
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +1
Query: 91 VGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKGIS 270
+GG++ TL +F + GLLN I+ + DLLK+ + +S+ N+ + ++
Sbjct: 107 IGGVVGTLVS----GLFLLIIGLLNAIILI--DLLKIFKKSHSNESLSRQQNEEIERLLT 160
Query: 271 FEKLRNKYFKDL 306
L N++FK L
Sbjct: 161 SRGLLNRFFKPL 172
>sp|P04933|MSP1_PLAFW Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P195)
Length = 1639
Score = 29.6 bits (65), Expect = 2.4
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = +1
Query: 151 KGLLNEILDLVK-DLLKLESDPAKLQRISKLLNDLSSKGISFEKLRNKYF 297
K +NEI + +K + K+ESD + SK LND++ + +EKL N+ +
Sbjct: 450 KKFINEIKEKIKIEKKKIESDKKSYEDRSKSLNDITKE---YEKLLNEIY 496
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,248,263
Number of Sequences: 369166
Number of extensions: 516976
Number of successful extensions: 1760
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)