Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_B04
(561 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 34 0.22
sp|Q9CI63|P2IN_LACLA Prophage ps2 probable integrase (Int-TnX) 33 0.48
sp|Q48262|NIXA_HELPY High-affinity nickel-transport protein... 32 0.82
sp|Q9ZM74|NIXA_HELPJ High-affinity nickel-transport protein... 32 1.1
sp|P19879|MIME_BOVIN Mimecan precursor (Osteoglycin) [Conta... 32 1.4
sp|P20774|MIME_HUMAN Mimecan precursor (Osteoglycin) (Osteo... 31 1.8
sp|P42073|REF2_YEAST RNA end formation protein 2 31 2.4
sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and ... 31 2.4
sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen) 31 2.4
sp|Q8TT60|HEM1_METAC Glutamyl-tRNA reductase (GluTR) 30 3.1
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 34.3 bits (77), Expect = 0.22
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +2
Query: 260 LDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKGISFEKL 439
LD +EQ N TV+ +L+L KD KLE + ++ + K + D+ + +EK
Sbjct: 178 LDRIEQDYN-NFKKTVEEKRARVLELKKDKEKLEDE---IKNLEKRIKDIKDQFDEYEKK 233
Query: 440 RNKYFK 457
RN+Y K
Sbjct: 234 RNQYLK 239
>sp|Q9CI63|P2IN_LACLA Prophage ps2 probable integrase (Int-TnX)
Length = 382
Score = 33.1 bits (74), Expect = 0.48
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +2
Query: 308 KGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKGISFEKLRNKYFKDLDLEAVV 481
K LN I D DL +E +PA+ ++ K + + EK++NKY + +L+A++
Sbjct: 131 KSTLNLIFDYAVDLEYIEYNPARKAKLPKKIQTVKD----LEKIQNKYLEQNELKALL 184
>sp|Q48262|NIXA_HELPY High-affinity nickel-transport protein nixA
Length = 331
Score = 32.3 bits (72), Expect = 0.82
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +2
Query: 233 PLTNIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLS 412
P+ +GG++ TL +F + GLLN I+ L DLLK+ + +S+ N+
Sbjct: 102 PMLEEIGGVVGTLVS----GLFLLIIGLLNAIILL--DLLKIFKKSHSNESLSQQQNEEI 155
Query: 413 SKGISFEKLRNKYFKDL 463
+ ++ L N++FK L
Sbjct: 156 ERLLTSRGLLNRFFKPL 172
>sp|Q9ZM74|NIXA_HELPJ High-affinity nickel-transport protein nixA
Length = 331
Score = 32.0 bits (71), Expect = 1.1
Identities = 22/77 (28%), Positives = 40/77 (51%)
Frame = +2
Query: 233 PLTNIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLS 412
P+ +GG++ TL +F + GLLN I+ + DLLK+ + +S+ N+
Sbjct: 102 PMLEEIGGVVGTLVS----GLFLLIIGLLNAIILI--DLLKIFKKSHSNESLSRQQNEEI 155
Query: 413 SKGISFEKLRNKYFKDL 463
+ ++ L N++FK L
Sbjct: 156 ERLLTSRGLLNRFFKPL 172
>sp|P19879|MIME_BOVIN Mimecan precursor (Osteoglycin) [Contains: Corneal keratan sulfate
proteoglycan 25 core protein (KSPG25 protein);
Osteoinductive factor (OIF)]
Length = 299
Score = 31.6 bits (70), Expect = 1.4
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +2
Query: 242 NIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKG 421
+ G L++ +E FS + LL E+ LLKL P KL + N + S+G
Sbjct: 150 DFTGNLIEDIED----GTFSKLS-LLEELTLAENQLLKLPVLPPKLTLFNAKYNKIKSRG 204
Query: 422 I---SFEKLRNKYFKDLDLEAV 478
I +F+KL N F LD A+
Sbjct: 205 IKANTFKKLHNLSFLYLDHNAL 226
>sp|P20774|MIME_HUMAN Mimecan precursor (Osteoglycin) (Osteoinductive factor) (OIF)
Length = 298
Score = 31.2 bits (69), Expect = 1.8
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +2
Query: 242 NIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKG 421
+ G L++ +E FS + LL E+ LLKL P KL + N + S+G
Sbjct: 149 DFTGNLIEDIED----GTFSKLS-LLEELSLAENQLLKLPVLPPKLTLFNAKYNKIKSRG 203
Query: 422 I---SFEKLRNKYFKDLDLEAV 478
I +F+KL N F LD A+
Sbjct: 204 IKANAFKKLNNLTFLYLDHNAL 225
>sp|P42073|REF2_YEAST RNA end formation protein 2
Length = 533
Score = 30.8 bits (68), Expect = 2.4
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 257 DLQLYXXXXXXXXIYPNQVIRLFHLKVHLEVHPKVR----HYFLHLLPKLHP 114
D+QLY Y NQ+I+L H K H P +F++ LPK P
Sbjct: 76 DIQLYSGLKSMYLDYLNQLIKLKHEKQHHSTPPIANDVSLDFFVNQLPKFSP 127
>sp|Q8N3Y1|FBXW8_HUMAN F-box/WD-repeat protein 8 (F-box and WD-40 domain protein 8) (F-box
only protein 29)
Length = 598
Score = 30.8 bits (68), Expect = 2.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 297 NILRGIVCSSVSKRPPTIFVSGNPD 223
N+LR C ++S PP + VSGN D
Sbjct: 430 NVLRDFTCVNLSDSPPNLMVSGNMD 454
>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
Length = 2022
Score = 30.8 bits (68), Expect = 2.4
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 236 LTNIVGGLLDTLEQ--TIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDL 409
LTN + L T+ Q TI I + LNE L DL L+ A+++ K++ND
Sbjct: 1675 LTNRLNSLEKTVSQQRTIETEIRQQLSLALNERNTLQNDLRDLQRRLARMETEKKIMND- 1733
Query: 410 SSKGISFEKLRNKYFKDLDL 469
K EK+R K ++L
Sbjct: 1734 --KYDELEKIRASLIKRIEL 1751
>sp|Q8TT60|HEM1_METAC Glutamyl-tRNA reductase (GluTR)
Length = 460
Score = 30.4 bits (67), Expect = 3.1
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +2
Query: 323 EILDLVKDLLKLESDPAKLQRISKLLNDLSSKGISFEKLRNKYFKDLDLEAVVKANVDVK 502
E LD+V + LE D AKL++I++ + G + E+ K + +AVVK VK
Sbjct: 400 EFLDVVSRVFCLEKDKAKLEKINQAKFEQIEPGCAKEQAAVKEQTAVKEQAVVKEQAAVK 459
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,256,685
Number of Sequences: 369166
Number of extensions: 648260
Number of successful extensions: 2355
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2355
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)