Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_I01
(583 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ... 32 1.1
sp|Q8K9A0|ISPA_BUCAP Geranyltranstransferase (Farnesyl-diph... 32 1.5
sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination... 31 2.0
sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen) 31 2.0
sp|Q8TT60|HEM1_METAC Glutamyl-tRNA reductase (GluTR) 31 2.6
sp|P42073|REF2_YEAST RNA end formation protein 2 30 5.7
sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 in... 30 5.7
sp|P28699|RARG_XENLA Retinoic acid receptor gamma (RAR-gamma) 29 7.4
sp|P19879|MIME_BOVIN Mimecan precursor (Osteoglycin) [Conta... 29 7.4
sp|Q9PQX3|Y170_UREPA Hypothetical protein UU170 29 7.4
>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
Length = 864
Score = 32.0 bits (71), Expect = 1.1
Identities = 21/66 (31%), Positives = 34/66 (51%)
Frame = +3
Query: 282 LDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKGISFEKL 461
LD +EQ N TV+ +L+L KD KLE + ++ + K + D+ + +EK
Sbjct: 178 LDRIEQDYN-NFKKTVEEKRARVLELKKDKEKLEDE---IKNLEKRIKDIKDQFDEYEKK 233
Query: 462 RKKYFK 479
R +Y K
Sbjct: 234 RNQYLK 239
>sp|Q8K9A0|ISPA_BUCAP Geranyltranstransferase (Farnesyl-diphosphate synthase) (FPP
synthase)
Length = 294
Score = 31.6 bits (70), Expect = 1.5
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +3
Query: 309 LNIFSTVKGLL----NEILDLVKDLLKLESDPAKLQRISKLLNDLSSKGISFEKLRKKYF 476
L+ FS GL ++ILDL D+ KLES K + LL L I ++L K+ F
Sbjct: 208 LDKFSVSIGLAFQIQDDILDLKNDIKKLESKRNKTKNTYPLLIGLKKSKIKIKELYKEAF 267
Query: 477 KDLDLEAVVKANVDV 521
L+ ++K N +V
Sbjct: 268 FTLE---ILKKNFNV 279
>sp|Q9K974|RECN_BACHD DNA repair protein recN (Recombination protein N)
Length = 565
Score = 31.2 bits (69), Expect = 2.0
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 336 LLNEILDLVKDLL-KLESDPAKLQRISKLLNDLSSKGISFEKLRKKYFKDLDLEAVVKAN 512
LL E + ++D L KLE DP +L+ I L++L +KL++KY +D +
Sbjct: 277 LLEEAMFTLRDYLDKLEFDPTRLEMIESRLHEL-------QKLKRKYGDSVDAIVEYAST 329
Query: 513 VDVKTD 530
++ + D
Sbjct: 330 IEEQLD 335
>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
Length = 2022
Score = 31.2 bits (69), Expect = 2.0
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +3
Query: 258 LTNIVGGLLDTLEQ--TIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDL 431
LTN + L T+ Q TI I + LNE L DL L+ A+++ K++ND
Sbjct: 1675 LTNRLNSLEKTVSQQRTIETEIRQQLSLALNERNTLQNDLRDLQRRLARMETEKKIMND- 1733
Query: 432 SSKGISFEKLRKKYFKDLDL 491
K EK+R K ++L
Sbjct: 1734 --KYDELEKIRASLIKRIEL 1751
>sp|Q8TT60|HEM1_METAC Glutamyl-tRNA reductase (GluTR)
Length = 460
Score = 30.8 bits (68), Expect = 2.6
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 345 EILDLVKDLLKLESDPAKLQRISKLLNDLSSKGISFEKLRKKYFKDLDLEAVVKANVDVK 524
E LD+V + LE D AKL++I++ + G + E+ K + +AVVK VK
Sbjct: 400 EFLDVVSRVFCLEKDKAKLEKINQAKFEQIEPGCAKEQAAVKEQTAVKEQAVVKEQAAVK 459
>sp|P42073|REF2_YEAST RNA end formation protein 2
Length = 533
Score = 29.6 bits (65), Expect = 5.7
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Frame = -2
Query: 279 DLQLYXXXXXXXXIYPNQVIRLFHLKVHLEVHPKVR----HYFLYLLPKLHP 136
D+QLY Y NQ+I+L H K H P +F+ LPK P
Sbjct: 76 DIQLYSGLKSMYLDYLNQLIKLKHEKQHHSTPPIANDVSLDFFVNQLPKFSP 127
>sp|Q58295|DPOL_METJA DNA polymerase [Contains: Mja pol-1 intein; Mja pol-2 intein]
Length = 1634
Score = 29.6 bits (65), Expect = 5.7
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 345 EILDLVKDLLKLESDPAKLQRISKLLNDLSSKGISFEKLRKK 470
+I + + DL++ D K IS++L + K SF+K+ KK
Sbjct: 902 KIGEYIDDLMRKHKDKIKFSGISEILETKNLKTFSFDKITKK 943
>sp|P28699|RARG_XENLA Retinoic acid receptor gamma (RAR-gamma)
Length = 476
Score = 29.3 bits (64), Expect = 7.4
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +3
Query: 255 PLTNIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLL 422
PLT++V D Q +PL + T GLL+ I + D + LE +P K++++ + L
Sbjct: 327 PLTDLVFSFAD---QLLPLEMDDTETGLLSAICLICGDRMDLE-EPEKVEKLQEPL 378
>sp|P19879|MIME_BOVIN Mimecan precursor (Osteoglycin) [Contains: Corneal keratan sulfate
proteoglycan 25 core protein (KSPG25 protein);
Osteoinductive factor (OIF)]
Length = 299
Score = 29.3 bits (64), Expect = 7.4
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +3
Query: 264 NIVGGLLDTLEQTIPLNIFSTVKGLLNEILDLVKDLLKLESDPAKLQRISKLLNDLSSKG 443
+ G L++ +E FS + LL E+ LLKL P KL + N + S+G
Sbjct: 150 DFTGNLIEDIED----GTFSKLS-LLEELTLAENQLLKLPVLPPKLTLFNAKYNKIKSRG 204
Query: 444 I---SFEKLRKKYFKDLDLEAV 500
I +F+KL F LD A+
Sbjct: 205 IKANTFKKLHNLSFLYLDHNAL 226
>sp|Q9PQX3|Y170_UREPA Hypothetical protein UU170
Length = 147
Score = 29.3 bits (64), Expect = 7.4
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
Frame = +3
Query: 420 LNDLSSKGISFEK------LRK----KYFKDLDLEAVVKANVDVKTDE*I*FIKCDNNNK 569
LN+L + S++K LRK +YFK LD E + D I F K D+NNK
Sbjct: 78 LNELLGRNASYDKEINNQGLRKFRTQEYFKRLDFELANEQKSTDIEDTTITFEKVDDNNK 137
Query: 570 ILL 578
+ +
Sbjct: 138 LTI 140
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,555,869
Number of Sequences: 369166
Number of extensions: 695720
Number of successful extensions: 2463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2463
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)