Planaria EST Database

DrC_00050

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00050
         (969 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31410|VATB_HELVI  Vacuolar ATP synthase subunit B (V-ATP...   366   e-101
sp|P31409|VATB_DROME  Vacuolar ATP synthase subunit B (V-ATP...   366   e-101
sp|P31401|VATB_MANSE  Vacuolar ATP synthase subunit B (V-ATP...   366   e-101
sp|Q19626|VATB_CAEEL  Probable vacuolar ATP synthase subunit...   365   e-100
sp|P62815|VATB2_RAT  Vacuolar ATP synthase subunit B, brain ...   364   e-100
sp|P49712|VATB_CHICK  Vacuolar ATP synthase subunit B (V-ATP...   363   e-100
sp|P31408|VATB2_BOVIN  Vacuolar ATP synthase subunit B, brai...   362   e-100
sp|P21281|VATB2_HUMAN  Vacuolar ATP synthase subunit B, brai...   361   2e-99
sp|P31407|VATB1_BOVIN  Vacuolar ATP synthase subunit B, kidn...   357   4e-98
sp|P15313|VATB1_HUMAN  Vacuolar ATP synthase subunit B, kidn...   356   5e-98

>sp|P31410|VATB_HELVI Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
           proton pump B subunit)
          Length = 494

 Score =  366 bits (940), Expect = e-101
 Identities = 179/228 (78%), Positives = 198/228 (86%)
 Frame = +3

Query: 3   LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
           LT AE+LAY CEK+VLVI TDM+ Y            +VPGRRGFPG MYTDLATIYER 
Sbjct: 263 LTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 322

Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
           G  +  NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSL
Sbjct: 323 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSL 382

Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTKF 542
           SRLMKSAIGEGMTR+DHSDVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFLTKF
Sbjct: 383 SRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKF 442

Query: 543 EKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 686
           EKNFI+QG+Y+NR+V++SLD+GW LLR FP E LKRIP  + A++YPR
Sbjct: 443 EKNFISQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPR 490

>sp|P31409|VATB_DROME Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
           proton pump B subunit) (V-ATPase 57 kDa subunit)
          Length = 490

 Score =  366 bits (940), Expect = e-101
 Identities = 179/228 (78%), Positives = 198/228 (86%)
 Frame = +3

Query: 3   LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
           LT AE+LAY CEK+VLVI TDM+ Y            +VPGRRGFPG MYTDLATIYER 
Sbjct: 259 LTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 318

Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
           G  +  NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSL
Sbjct: 319 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSL 378

Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTKF 542
           SRLMKSAIGEGMTR+DHSDVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFLTKF
Sbjct: 379 SRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKF 438

Query: 543 EKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 686
           EKNFI+QG+Y+NR+V++SLD+GW LLR FP E LKRIP  + A++YPR
Sbjct: 439 EKNFISQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPR 486

>sp|P31401|VATB_MANSE Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
           proton pump B subunit)
          Length = 494

 Score =  366 bits (939), Expect = e-101
 Identities = 179/228 (78%), Positives = 197/228 (86%)
 Frame = +3

Query: 3   LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
           LT AE+LAY CEK+VLVI TDM+ Y            +VPGRRGFPG MYTDLATIYER 
Sbjct: 263 LTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 322

Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
           G  +  NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSL
Sbjct: 323 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSL 382

Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTKF 542
           SRLMKSAIGEGMTR+DHSDVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFLTKF
Sbjct: 383 SRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKF 442

Query: 543 EKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 686
           EKNFI QG+Y+NR+V++SLD+GW LLR FP E LKRIP  + A++YPR
Sbjct: 443 EKNFITQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPR 490

>sp|Q19626|VATB_CAEEL Probable vacuolar ATP synthase subunit B (V-ATPase B subunit)
           (Vacuolar proton pump B subunit)
          Length = 491

 Score =  365 bits (937), Expect = e-100
 Identities = 180/228 (78%), Positives = 195/228 (85%)
 Frame = +3

Query: 3   LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
           LT+AE+LAY C+K+VLV+ TDM+ Y            +VPGRRGFPG MYTDLATIYER 
Sbjct: 259 LTSAEFLAYQCKKHVLVVLTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 318

Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
           G  +  +GSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNR IYPPINVLPSL
Sbjct: 319 GRVEGRDGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSL 378

Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTKF 542
           SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALS +DLLYLEFLTKF
Sbjct: 379 SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSDDLLYLEFLTKF 438

Query: 543 EKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 686
           EKNFI QG Y+NRSV++SLD+GW LLR FP E LKRIP+    KYYPR
Sbjct: 439 EKNFITQGHYENRSVFESLDIGWQLLRIFpreMLKRIPESTLEKYYPR 486

>sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
           subunit) (Vacuolar proton pump B isoform 2)
           (Endomembrane proton pump 58 kDa subunit)
 sp|P62814|VATB2_MOUSE Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
           subunit) (Vacuolar proton pump B isoform 2)
           (Endomembrane proton pump 58 kDa subunit)
          Length = 511

 Score =  364 bits (935), Expect = e-100
 Identities = 178/233 (76%), Positives = 198/233 (84%)
 Frame = +3

Query: 3   LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
           LTTAE+LAY CEK+VLVI TDM+ Y            +VPGRRGFPG MYTDLATIYER 
Sbjct: 279 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 338

Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
           G  +  NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL
Sbjct: 339 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 398

Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTKF 542
           SRLMKSAIGEGMTR+DH+DVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFL KF
Sbjct: 399 SRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKF 458

Query: 543 EKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPRPTGQN 701
           EKNFI QG Y+NR+VY++LD+GW LLR FP E LKRIP    +++YPR + ++
Sbjct: 459 EKNFITQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDSAKH 511

>sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
           proton pump B subunit)
          Length = 453

 Score =  363 bits (933), Expect = e-100
 Identities = 179/228 (78%), Positives = 195/228 (85%)
 Frame = +3

Query: 3   LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
           LTTAE+LAY CEK+VLVI TDM+ Y            +VPGRRGFPG MYTDLATIYER 
Sbjct: 220 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 279

Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
           G  +  NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL
Sbjct: 280 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 339

Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTKF 542
           SRLMKSAIGEGMTR+DH+DVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFL KF
Sbjct: 340 SRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKF 399

Query: 543 EKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 686
           EKNFI QG Y+NR+VY++LD+GW LLR FP E LKRIP    A++YPR
Sbjct: 400 EKNFIAQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQTTLAEFYPR 447

>sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
           subunit) (Vacuolar proton pump B isoform 2)
           (Endomembrane proton pump 58 kDa subunit)
          Length = 511

 Score =  362 bits (930), Expect = e-100
 Identities = 177/233 (75%), Positives = 198/233 (84%)
 Frame = +3

Query: 3   LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
           LTTAE+LAY CEK+VLVI TDM+ Y            +VPGRRGFPG MYTDLATIYER 
Sbjct: 279 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 338

Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
           G  +  NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL
Sbjct: 339 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 398

Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTKF 542
           SRLMKSAIGEGMTR+DH+DVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFL KF
Sbjct: 399 SRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKF 458

Query: 543 EKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPRPTGQN 701
           E+NFI QG Y+NR+VY++LD+GW LLR FP E LKRIP    +++YPR + ++
Sbjct: 459 ERNFIAQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDSAKH 511

>sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
           subunit) (Vacuolar proton pump B isoform 2)
           (Endomembrane proton pump 58 kDa subunit) (HO57)
          Length = 511

 Score =  361 bits (926), Expect = 2e-99
 Identities = 176/233 (75%), Positives = 198/233 (84%)
 Frame = +3

Query: 3   LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
           LTTAE+LAY CEK+VLVI TDM+ Y            +VPGRRGFPG MYTDLATIYER 
Sbjct: 279 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 338

Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
           G  +  NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL
Sbjct: 339 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 398

Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTKF 542
           SRLMKSAIGEGMTR+DH+DVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFL KF
Sbjct: 399 SRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQKF 458

Query: 543 EKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPRPTGQN 701
           E+NFI QG Y+NR+V+++LD+GW LLR FP E LKRIP    +++YPR + ++
Sbjct: 459 ERNFIAQGPYENRTVFETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDSAKH 511

>sp|P31407|VATB1_BOVIN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
           subunit) (Vacuolar proton pump B isoform 1)
           (Endomembrane proton pump 58 kDa subunit)
          Length = 513

 Score =  357 bits (915), Expect = 4e-98
 Identities = 178/237 (75%), Positives = 194/237 (81%)
 Frame = +3

Query: 3   LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
           LTTAE+LAY CEK+VLVI TDM+ Y            +VPGRRGFPG MYTDLATIYER 
Sbjct: 273 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 332

Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
           G  +   GSITQIPILTMPNDDITHPIPDLTG+ITEGQIYVDRQLHNRQIYPPINVLPSL
Sbjct: 333 GRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSL 392

Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTKF 542
           SRLMKSAIGEGMTR+DH DVSNQLYACYAIGKDVQAMKAVVGEEAL+ EDLLYLEFL KF
Sbjct: 393 SRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEALTSEDLLYLEFLQKF 452

Query: 543 EKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPRPTGQNTAQA 713
           EK FINQG Y+ RSV++SLDLGW LLRTFP E LKRIP  +  +++ R       +A
Sbjct: 453 EKKFINQGPYEKRSVFESLDLGWKLLRTFPKEMLKRIPQNIIDEFFSREGAPQDTEA 509

>sp|P15313|VATB1_HUMAN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
           subunit) (Vacuolar proton pump B isoform 1)
           (Endomembrane proton pump 58 kDa subunit)
          Length = 513

 Score =  356 bits (914), Expect = 5e-98
 Identities = 177/228 (77%), Positives = 192/228 (84%)
 Frame = +3

Query: 3   LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
           LTTAE+LAY CEK+VLVI TDM+ Y            +VPGRRGFPG MYTDLATIYER 
Sbjct: 273 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 332

Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
           G  +   GSITQIPILTMPNDDITHPIPDLTG+ITEGQIYVDRQLHNRQIYPPINVLPSL
Sbjct: 333 GRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSL 392

Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTKF 542
           SRLMKSAIGEGMTR+DH DVSNQLYACYAIGKDVQAMKAVVGEEAL+ EDLLYLEFL KF
Sbjct: 393 SRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEALTSEDLLYLEFLQKF 452

Query: 543 EKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 686
           EKNFINQG Y+NRS+++SLDL W LLR FP E LKRIP  +  ++Y R
Sbjct: 453 EKNFINQGPYENRSMFESLDLSWKLLRIFPKEMLKRIPQAVIDEFYSR 500

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,308,597
Number of Sequences: 369166
Number of extensions: 2140522
Number of successful extensions: 6085
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5846
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10096222345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00050

  1. Dr_sW_002_D06
  2. Dr_sW_023_C03
  3. Dr_sW_026_M17
  4. Dr_sW_006_F22