Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_D06
(454 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain ... 246 1e-65
sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATP... 246 1e-65
sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brai... 246 1e-65
sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brai... 246 1e-65
sp|P31401|VATB_MANSE Vacuolar ATP synthase subunit B (V-ATP... 245 3e-65
sp|P31410|VATB_HELVI Vacuolar ATP synthase subunit B (V-ATP... 245 3e-65
sp|P31409|VATB_DROME Vacuolar ATP synthase subunit B (V-ATP... 245 3e-65
sp|P15313|VATB1_HUMAN Vacuolar ATP synthase subunit B, kidn... 242 2e-64
sp|P31407|VATB1_BOVIN Vacuolar ATP synthase subunit B, kidn... 242 2e-64
sp|Q19626|VATB_CAEEL Probable vacuolar ATP synthase subunit... 241 5e-64
>sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
sp|P62814|VATB2_MOUSE Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 246 bits (629), Expect = 1e-65
Identities = 122/150 (81%), Positives = 129/150 (86%)
Frame = +3
Query: 3 LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
LTTAE+LAY CEK+VLVI TDM+ Y +VPGRRGFPG MYTDLATIYER
Sbjct: 279 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 338
Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
G + NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL
Sbjct: 339 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 398
Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAI 452
SRLMKSAIGEGMTR+DH+DVSNQLYACYAI
Sbjct: 399 SRLMKSAIGEGMTRKDHADVSNQLYACYAI 428
>sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 453
Score = 246 bits (629), Expect = 1e-65
Identities = 122/150 (81%), Positives = 129/150 (86%)
Frame = +3
Query: 3 LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
LTTAE+LAY CEK+VLVI TDM+ Y +VPGRRGFPG MYTDLATIYER
Sbjct: 220 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 279
Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
G + NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL
Sbjct: 280 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 339
Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAI 452
SRLMKSAIGEGMTR+DH+DVSNQLYACYAI
Sbjct: 340 SRLMKSAIGEGMTRKDHADVSNQLYACYAI 369
>sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit) (HO57)
Length = 511
Score = 246 bits (629), Expect = 1e-65
Identities = 122/150 (81%), Positives = 129/150 (86%)
Frame = +3
Query: 3 LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
LTTAE+LAY CEK+VLVI TDM+ Y +VPGRRGFPG MYTDLATIYER
Sbjct: 279 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 338
Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
G + NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL
Sbjct: 339 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 398
Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAI 452
SRLMKSAIGEGMTR+DH+DVSNQLYACYAI
Sbjct: 399 SRLMKSAIGEGMTRKDHADVSNQLYACYAI 428
>sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 246 bits (629), Expect = 1e-65
Identities = 122/150 (81%), Positives = 129/150 (86%)
Frame = +3
Query: 3 LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
LTTAE+LAY CEK+VLVI TDM+ Y +VPGRRGFPG MYTDLATIYER
Sbjct: 279 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 338
Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
G + NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL
Sbjct: 339 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 398
Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAI 452
SRLMKSAIGEGMTR+DH+DVSNQLYACYAI
Sbjct: 399 SRLMKSAIGEGMTRKDHADVSNQLYACYAI 428
>sp|P31401|VATB_MANSE Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 494
Score = 245 bits (626), Expect = 3e-65
Identities = 121/150 (80%), Positives = 128/150 (85%)
Frame = +3
Query: 3 LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
LT AE+LAY CEK+VLVI TDM+ Y +VPGRRGFPG MYTDLATIYER
Sbjct: 263 LTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 322
Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
G + NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSL
Sbjct: 323 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSL 382
Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAI 452
SRLMKSAIGEGMTR+DHSDVSNQLYACYAI
Sbjct: 383 SRLMKSAIGEGMTRKDHSDVSNQLYACYAI 412
>sp|P31410|VATB_HELVI Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 494
Score = 245 bits (626), Expect = 3e-65
Identities = 121/150 (80%), Positives = 128/150 (85%)
Frame = +3
Query: 3 LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
LT AE+LAY CEK+VLVI TDM+ Y +VPGRRGFPG MYTDLATIYER
Sbjct: 263 LTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 322
Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
G + NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSL
Sbjct: 323 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSL 382
Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAI 452
SRLMKSAIGEGMTR+DHSDVSNQLYACYAI
Sbjct: 383 SRLMKSAIGEGMTRKDHSDVSNQLYACYAI 412
>sp|P31409|VATB_DROME Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
Length = 490
Score = 245 bits (626), Expect = 3e-65
Identities = 121/150 (80%), Positives = 128/150 (85%)
Frame = +3
Query: 3 LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
LT AE+LAY CEK+VLVI TDM+ Y +VPGRRGFPG MYTDLATIYER
Sbjct: 259 LTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 318
Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
G + NGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPSL
Sbjct: 319 GRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPSL 378
Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAI 452
SRLMKSAIGEGMTR+DHSDVSNQLYACYAI
Sbjct: 379 SRLMKSAIGEGMTRKDHSDVSNQLYACYAI 408
>sp|P15313|VATB1_HUMAN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
subunit) (Vacuolar proton pump B isoform 1)
(Endomembrane proton pump 58 kDa subunit)
Length = 513
Score = 242 bits (618), Expect = 2e-64
Identities = 120/150 (80%), Positives = 127/150 (84%)
Frame = +3
Query: 3 LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
LTTAE+LAY CEK+VLVI TDM+ Y +VPGRRGFPG MYTDLATIYER
Sbjct: 273 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 332
Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
G + GSITQIPILTMPNDDITHPIPDLTG+ITEGQIYVDRQLHNRQIYPPINVLPSL
Sbjct: 333 GRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSL 392
Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAI 452
SRLMKSAIGEGMTR+DH DVSNQLYACYAI
Sbjct: 393 SRLMKSAIGEGMTRKDHGDVSNQLYACYAI 422
>sp|P31407|VATB1_BOVIN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
subunit) (Vacuolar proton pump B isoform 1)
(Endomembrane proton pump 58 kDa subunit)
Length = 513
Score = 242 bits (618), Expect = 2e-64
Identities = 120/150 (80%), Positives = 127/150 (84%)
Frame = +3
Query: 3 LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
LTTAE+LAY CEK+VLVI TDM+ Y +VPGRRGFPG MYTDLATIYER
Sbjct: 273 LTTAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 332
Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
G + GSITQIPILTMPNDDITHPIPDLTG+ITEGQIYVDRQLHNRQIYPPINVLPSL
Sbjct: 333 GRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPSL 392
Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAI 452
SRLMKSAIGEGMTR+DH DVSNQLYACYAI
Sbjct: 393 SRLMKSAIGEGMTRKDHGDVSNQLYACYAI 422
>sp|Q19626|VATB_CAEEL Probable vacuolar ATP synthase subunit B (V-ATPase B subunit)
(Vacuolar proton pump B subunit)
Length = 491
Score = 241 bits (615), Expect = 5e-64
Identities = 119/150 (79%), Positives = 128/150 (85%)
Frame = +3
Query: 3 LTTAEYLAYMCEKNVLVIHTDMT*YXXXXXXXXXXXXQVPGRRGFPGDMYTDLATIYERV 182
LT+AE+LAY C+K+VLV+ TDM+ Y +VPGRRGFPG MYTDLATIYER
Sbjct: 259 LTSAEFLAYQCKKHVLVVLTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERA 318
Query: 183 GLTDCHNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSL 362
G + +GSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNR IYPPINVLPSL
Sbjct: 319 GRVEGRDGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPSL 378
Query: 363 SRLMKSAIGEGMTREDHSDVSNQLYACYAI 452
SRLMKSAIGEGMTREDHSDVSNQLYACYAI
Sbjct: 379 SRLMKSAIGEGMTREDHSDVSNQLYACYAI 408
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,593,012
Number of Sequences: 369166
Number of extensions: 835552
Number of successful extensions: 3045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2913
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)