Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_M17
(657 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19626|VATB_CAEEL Probable vacuolar ATP synthase subunit... 218 1e-56
sp|P31410|VATB_HELVI Vacuolar ATP synthase subunit B (V-ATP... 216 5e-56
sp|P31409|VATB_DROME Vacuolar ATP synthase subunit B (V-ATP... 216 5e-56
sp|P31401|VATB_MANSE Vacuolar ATP synthase subunit B (V-ATP... 215 7e-56
sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain ... 212 8e-55
sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATP... 211 1e-54
sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brai... 210 3e-54
sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brai... 208 9e-54
sp|P31407|VATB1_BOVIN Vacuolar ATP synthase subunit B, kidn... 208 1e-53
sp|P15313|VATB1_HUMAN Vacuolar ATP synthase subunit B, kidn... 207 1e-53
>sp|Q19626|VATB_CAEEL Probable vacuolar ATP synthase subunit B (V-ATPase B subunit)
(Vacuolar proton pump B subunit)
Length = 491
Score = 218 bits (555), Expect = 1e-56
Identities = 106/124 (85%), Positives = 112/124 (90%)
Frame = +3
Query: 3 LHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEE 182
LHNR IYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEE
Sbjct: 363 LHNRLIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEE 422
Query: 183 ALSQEDLLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAK 362
ALS +DLLYLEFLTKFEKNFI QG Y+NRSV++SLD+GW LLR FP E LKRIP+ K
Sbjct: 423 ALSSDDLLYLEFLTKFEKNFITQGHYENRSVFESLDIGWQLLRIFpreMLKRIPESTLEK 482
Query: 363 YYPR 374
YYPR
Sbjct: 483 YYPR 486
>sp|P31410|VATB_HELVI Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 494
Score = 216 bits (549), Expect = 5e-56
Identities = 102/124 (82%), Positives = 116/124 (93%)
Frame = +3
Query: 3 LHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEE 182
LHNRQIYPP+NVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYACYAIGKDVQAMKAVVGEE
Sbjct: 367 LHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEE 426
Query: 183 ALSQEDLLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAK 362
AL+ +DLLYLEFLTKFEKNFI+QG+Y+NR+V++SLD+GW LLR FP E LKRIP + A+
Sbjct: 427 ALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAE 486
Query: 363 YYPR 374
+YPR
Sbjct: 487 FYPR 490
>sp|P31409|VATB_DROME Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
Length = 490
Score = 216 bits (549), Expect = 5e-56
Identities = 102/124 (82%), Positives = 116/124 (93%)
Frame = +3
Query: 3 LHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEE 182
LHNRQIYPP+NVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYACYAIGKDVQAMKAVVGEE
Sbjct: 363 LHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEE 422
Query: 183 ALSQEDLLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAK 362
AL+ +DLLYLEFLTKFEKNFI+QG+Y+NR+V++SLD+GW LLR FP E LKRIP + A+
Sbjct: 423 ALTPDDLLYLEFLTKFEKNFISQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAE 482
Query: 363 YYPR 374
+YPR
Sbjct: 483 FYPR 486
>sp|P31401|VATB_MANSE Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 494
Score = 215 bits (548), Expect = 7e-56
Identities = 102/124 (82%), Positives = 115/124 (92%)
Frame = +3
Query: 3 LHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEE 182
LHNRQIYPP+NVLPSLSRLMKSAIGEGMTR+DHSDVSNQLYACYAIGKDVQAMKAVVGEE
Sbjct: 367 LHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEE 426
Query: 183 ALSQEDLLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAK 362
AL+ +DLLYLEFLTKFEKNFI QG+Y+NR+V++SLD+GW LLR FP E LKRIP + A+
Sbjct: 427 ALTPDDLLYLEFLTKFEKNFITQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAE 486
Query: 363 YYPR 374
+YPR
Sbjct: 487 FYPR 490
>sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
sp|P62814|VATB2_MOUSE Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 212 bits (539), Expect = 8e-55
Identities = 100/129 (77%), Positives = 115/129 (89%)
Frame = +3
Query: 3 LHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEE 182
LHNRQIYPPINVLPSLSRLMKSAIGEGMTR+DH+DVSNQLYACYAIGKDVQAMKAVVGEE
Sbjct: 383 LHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEE 442
Query: 183 ALSQEDLLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAK 362
AL+ +DLLYLEFL KFEKNFI QG Y+NR+VY++LD+GW LLR FP E LKRIP ++
Sbjct: 443 ALTSDDLLYLEFLQKFEKNFITQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQSTLSE 502
Query: 363 YYPRPTGQN 389
+YPR + ++
Sbjct: 503 FYPRDSAKH 511
>sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 453
Score = 211 bits (537), Expect = 1e-54
Identities = 101/124 (81%), Positives = 112/124 (90%)
Frame = +3
Query: 3 LHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEE 182
LHNRQIYPPINVLPSLSRLMKSAIGEGMTR+DH+DVSNQLYACYAIGKDVQAMKAVVGEE
Sbjct: 324 LHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEE 383
Query: 183 ALSQEDLLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAK 362
AL+ +DLLYLEFL KFEKNFI QG Y+NR+VY++LD+GW LLR FP E LKRIP A+
Sbjct: 384 ALTSDDLLYLEFLQKFEKNFIAQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQTTLAE 443
Query: 363 YYPR 374
+YPR
Sbjct: 444 FYPR 447
>sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 210 bits (534), Expect = 3e-54
Identities = 99/129 (76%), Positives = 115/129 (89%)
Frame = +3
Query: 3 LHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEE 182
LHNRQIYPPINVLPSLSRLMKSAIGEGMTR+DH+DVSNQLYACYAIGKDVQAMKAVVGEE
Sbjct: 383 LHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEE 442
Query: 183 ALSQEDLLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAK 362
AL+ +DLLYLEFL KFE+NFI QG Y+NR+VY++LD+GW LLR FP E LKRIP ++
Sbjct: 443 ALTSDDLLYLEFLQKFERNFIAQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQSTLSE 502
Query: 363 YYPRPTGQN 389
+YPR + ++
Sbjct: 503 FYPRDSAKH 511
>sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit) (HO57)
Length = 511
Score = 208 bits (530), Expect = 9e-54
Identities = 98/129 (75%), Positives = 115/129 (89%)
Frame = +3
Query: 3 LHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEE 182
LHNRQIYPPINVLPSLSRLMKSAIGEGMTR+DH+DVSNQLYACYAIGKDVQAMKAVVGEE
Sbjct: 383 LHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEE 442
Query: 183 ALSQEDLLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAK 362
AL+ +DLLYLEFL KFE+NFI QG Y+NR+V+++LD+GW LLR FP E LKRIP ++
Sbjct: 443 ALTSDDLLYLEFLQKFERNFIAQGPYENRTVFETLDIGWQLLRIFPKEMLKRIPQSTLSE 502
Query: 363 YYPRPTGQN 389
+YPR + ++
Sbjct: 503 FYPRDSAKH 511
>sp|P31407|VATB1_BOVIN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
subunit) (Vacuolar proton pump B isoform 1)
(Endomembrane proton pump 58 kDa subunit)
Length = 513
Score = 208 bits (529), Expect = 1e-53
Identities = 102/133 (76%), Positives = 112/133 (84%)
Frame = +3
Query: 3 LHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEE 182
LHNRQIYPPINVLPSLSRLMKSAIGEGMTR+DH DVSNQLYACYAIGKDVQAMKAVVGEE
Sbjct: 377 LHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEE 436
Query: 183 ALSQEDLLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAK 362
AL+ EDLLYLEFL KFEK FINQG Y+ RSV++SLDLGW LLRTFP E LKRIP + +
Sbjct: 437 ALTSEDLLYLEFLQKFEKKFINQGPYEKRSVFESLDLGWKLLRTFPKEMLKRIPQNIIDE 496
Query: 363 YYPRPTGQNTAQA 401
++ R +A
Sbjct: 497 FFSREGAPQDTEA 509
>sp|P15313|VATB1_HUMAN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
subunit) (Vacuolar proton pump B isoform 1)
(Endomembrane proton pump 58 kDa subunit)
Length = 513
Score = 207 bits (528), Expect = 1e-53
Identities = 101/124 (81%), Positives = 110/124 (88%)
Frame = +3
Query: 3 LHNRQIYPPINVLPSLSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEE 182
LHNRQIYPPINVLPSLSRLMKSAIGEGMTR+DH DVSNQLYACYAIGKDVQAMKAVVGEE
Sbjct: 377 LHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEE 436
Query: 183 ALSQEDLLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAK 362
AL+ EDLLYLEFL KFEKNFINQG Y+NRS+++SLDL W LLR FP E LKRIP + +
Sbjct: 437 ALTSEDLLYLEFLQKFEKNFINQGPYENRSMFESLDLSWKLLRIFPKEMLKRIPQAVIDE 496
Query: 363 YYPR 374
+Y R
Sbjct: 497 FYSR 500
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,764,864
Number of Sequences: 369166
Number of extensions: 1417859
Number of successful extensions: 3311
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3294
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)