Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_F22
(457 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19626|VATB_CAEEL Probable vacuolar ATP synthase subunit... 95 8e-20
sp|P31410|VATB_HELVI Vacuolar ATP synthase subunit B (V-ATP... 93 2e-19
sp|P31409|VATB_DROME Vacuolar ATP synthase subunit B (V-ATP... 93 2e-19
sp|P31401|VATB_MANSE Vacuolar ATP synthase subunit B (V-ATP... 93 3e-19
sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain ... 90 3e-18
sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATP... 89 5e-18
sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brai... 88 1e-17
sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brai... 86 3e-17
sp|P31407|VATB1_BOVIN Vacuolar ATP synthase subunit B, kidn... 85 7e-17
sp|P15313|VATB1_HUMAN Vacuolar ATP synthase subunit B, kidn... 85 9e-17
>sp|Q19626|VATB_CAEEL Probable vacuolar ATP synthase subunit B (V-ATPase B subunit)
(Vacuolar proton pump B subunit)
Length = 491
Score = 94.7 bits (234), Expect = 8e-20
Identities = 43/58 (74%), Positives = 48/58 (82%)
Frame = +1
Query: 1 LLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 174
LLYLEFLTKFEKNFI QG Y+NRSV++SLD+GW LLR FP E LKRIP+ KYYPR
Sbjct: 429 LLYLEFLTKFEKNFITQGHYENRSVFESLDIGWQLLRIFpreMLKRIPESTLEKYYPR 486
>sp|P31410|VATB_HELVI Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 494
Score = 93.2 bits (230), Expect = 2e-19
Identities = 41/58 (70%), Positives = 51/58 (87%)
Frame = +1
Query: 1 LLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 174
LLYLEFLTKFEKNFI+QG+Y+NR+V++SLD+GW LLR FP E LKRIP + A++YPR
Sbjct: 433 LLYLEFLTKFEKNFISQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPR 490
>sp|P31409|VATB_DROME Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
Length = 490
Score = 93.2 bits (230), Expect = 2e-19
Identities = 41/58 (70%), Positives = 51/58 (87%)
Frame = +1
Query: 1 LLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 174
LLYLEFLTKFEKNFI+QG+Y+NR+V++SLD+GW LLR FP E LKRIP + A++YPR
Sbjct: 429 LLYLEFLTKFEKNFISQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPR 486
>sp|P31401|VATB_MANSE Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 494
Score = 92.8 bits (229), Expect = 3e-19
Identities = 41/58 (70%), Positives = 50/58 (86%)
Frame = +1
Query: 1 LLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 174
LLYLEFLTKFEKNFI QG+Y+NR+V++SLD+GW LLR FP E LKRIP + A++YPR
Sbjct: 433 LLYLEFLTKFEKNFITQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPR 490
>sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
sp|P62814|VATB2_MOUSE Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 89.7 bits (221), Expect = 3e-18
Identities = 39/63 (61%), Positives = 50/63 (79%)
Frame = +1
Query: 1 LLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPRPT 180
LLYLEFL KFEKNFI QG Y+NR+VY++LD+GW LLR FP E LKRIP +++YPR +
Sbjct: 449 LLYLEFLQKFEKNFITQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDS 508
Query: 181 GQN 189
++
Sbjct: 509 AKH 511
>sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 453
Score = 89.0 bits (219), Expect = 5e-18
Identities = 40/58 (68%), Positives = 47/58 (81%)
Frame = +1
Query: 1 LLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 174
LLYLEFL KFEKNFI QG Y+NR+VY++LD+GW LLR FP E LKRIP A++YPR
Sbjct: 390 LLYLEFLQKFEKNFIAQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQTTLAEFYPR 447
>sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 87.8 bits (216), Expect = 1e-17
Identities = 38/63 (60%), Positives = 50/63 (79%)
Frame = +1
Query: 1 LLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPRPT 180
LLYLEFL KFE+NFI QG Y+NR+VY++LD+GW LLR FP E LKRIP +++YPR +
Sbjct: 449 LLYLEFLQKFERNFIAQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDS 508
Query: 181 GQN 189
++
Sbjct: 509 AKH 511
>sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit) (HO57)
Length = 511
Score = 86.3 bits (212), Expect = 3e-17
Identities = 37/63 (58%), Positives = 50/63 (79%)
Frame = +1
Query: 1 LLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPRPT 180
LLYLEFL KFE+NFI QG Y+NR+V+++LD+GW LLR FP E LKRIP +++YPR +
Sbjct: 449 LLYLEFLQKFERNFIAQGPYENRTVFETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDS 508
Query: 181 GQN 189
++
Sbjct: 509 AKH 511
>sp|P31407|VATB1_BOVIN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
subunit) (Vacuolar proton pump B isoform 1)
(Endomembrane proton pump 58 kDa subunit)
Length = 513
Score = 85.1 bits (209), Expect = 7e-17
Identities = 40/67 (59%), Positives = 48/67 (71%)
Frame = +1
Query: 1 LLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPRPT 180
LLYLEFL KFEK FINQG Y+ RSV++SLDLGW LLRTFP E LKRIP + +++ R
Sbjct: 443 LLYLEFLQKFEKKFINQGPYEKRSVFESLDLGWKLLRTFPKEMLKRIPQNIIDEFFSREG 502
Query: 181 GQNTAQA 201
+A
Sbjct: 503 APQDTEA 509
>sp|P15313|VATB1_HUMAN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
subunit) (Vacuolar proton pump B isoform 1)
(Endomembrane proton pump 58 kDa subunit)
Length = 513
Score = 84.7 bits (208), Expect = 9e-17
Identities = 39/58 (67%), Positives = 46/58 (79%)
Frame = +1
Query: 1 LLYLEFLTKFEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 174
LLYLEFL KFEKNFINQG Y+NRS+++SLDL W LLR FP E LKRIP + ++Y R
Sbjct: 443 LLYLEFLQKFEKNFINQGPYENRSMFESLDLSWKLLRIFPKEMLKRIPQAVIDEFYSR 500
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,969,081
Number of Sequences: 369166
Number of extensions: 975633
Number of successful extensions: 2303
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2301
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)