Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_023_C03
(785 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19626|VATB_CAEEL Probable vacuolar ATP synthase subunit... 308 1e-83
sp|P31410|VATB_HELVI Vacuolar ATP synthase subunit B (V-ATP... 307 2e-83
sp|P31409|VATB_DROME Vacuolar ATP synthase subunit B (V-ATP... 307 2e-83
sp|P31401|VATB_MANSE Vacuolar ATP synthase subunit B (V-ATP... 307 2e-83
sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain ... 303 3e-82
sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATP... 303 5e-82
sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brai... 301 1e-81
sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brai... 300 3e-81
sp|P31407|VATB1_BOVIN Vacuolar ATP synthase subunit B, kidn... 296 6e-80
sp|P15313|VATB1_HUMAN Vacuolar ATP synthase subunit B, kidn... 295 7e-80
>sp|Q19626|VATB_CAEEL Probable vacuolar ATP synthase subunit B (V-ATPase B subunit)
(Vacuolar proton pump B subunit)
Length = 491
Score = 308 bits (788), Expect = 1e-83
Identities = 150/169 (88%), Positives = 157/169 (92%)
Frame = +1
Query: 1 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 180
AGRVEGR+GSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNR IYPPINVLPS
Sbjct: 318 AGRVEGRDGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRLIYPPINVLPS 377
Query: 181 LSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTK 360
LSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALS +DLLYLEFLTK
Sbjct: 378 LSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSSDDLLYLEFLTK 437
Query: 361 FEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 507
FEKNFI QG Y+NRSV++SLD+GW LLR FP E LKRIP+ KYYPR
Sbjct: 438 FEKNFITQGHYENRSVFESLDIGWQLLRIFpreMLKRIPESTLEKYYPR 486
>sp|P31410|VATB_HELVI Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 494
Score = 307 bits (787), Expect = 2e-83
Identities = 147/169 (86%), Positives = 161/169 (95%)
Frame = +1
Query: 1 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 180
AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPS
Sbjct: 322 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPS 381
Query: 181 LSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTK 360
LSRLMKSAIGEGMTR+DHSDVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFLTK
Sbjct: 382 LSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTK 441
Query: 361 FEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 507
FEKNFI+QG+Y+NR+V++SLD+GW LLR FP E LKRIP + A++YPR
Sbjct: 442 FEKNFISQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPR 490
>sp|P31409|VATB_DROME Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
Length = 490
Score = 307 bits (787), Expect = 2e-83
Identities = 147/169 (86%), Positives = 161/169 (95%)
Frame = +1
Query: 1 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 180
AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPS
Sbjct: 318 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPS 377
Query: 181 LSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTK 360
LSRLMKSAIGEGMTR+DHSDVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFLTK
Sbjct: 378 LSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTK 437
Query: 361 FEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 507
FEKNFI+QG+Y+NR+V++SLD+GW LLR FP E LKRIP + A++YPR
Sbjct: 438 FEKNFISQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPR 486
>sp|P31401|VATB_MANSE Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 494
Score = 307 bits (786), Expect = 2e-83
Identities = 147/169 (86%), Positives = 160/169 (94%)
Frame = +1
Query: 1 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 180
AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPP+NVLPS
Sbjct: 322 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPVNVLPS 381
Query: 181 LSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTK 360
LSRLMKSAIGEGMTR+DHSDVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFLTK
Sbjct: 382 LSRLMKSAIGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTK 441
Query: 361 FEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 507
FEKNFI QG+Y+NR+V++SLD+GW LLR FP E LKRIP + A++YPR
Sbjct: 442 FEKNFITQGNYENRTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPR 490
>sp|P62815|VATB2_RAT Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
sp|P62814|VATB2_MOUSE Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 303 bits (777), Expect = 3e-82
Identities = 145/174 (83%), Positives = 160/174 (91%)
Frame = +1
Query: 1 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 180
AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS
Sbjct: 338 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 397
Query: 181 LSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTK 360
LSRLMKSAIGEGMTR+DH+DVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFL K
Sbjct: 398 LSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQK 457
Query: 361 FEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPRPTGQN 522
FEKNFI QG Y+NR+VY++LD+GW LLR FP E LKRIP +++YPR + ++
Sbjct: 458 FEKNFITQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDSAKH 511
>sp|P49712|VATB_CHICK Vacuolar ATP synthase subunit B (V-ATPase B subunit) (Vacuolar
proton pump B subunit)
Length = 453
Score = 303 bits (775), Expect = 5e-82
Identities = 146/169 (86%), Positives = 157/169 (92%)
Frame = +1
Query: 1 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 180
AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS
Sbjct: 279 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 338
Query: 181 LSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTK 360
LSRLMKSAIGEGMTR+DH+DVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFL K
Sbjct: 339 LSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQK 398
Query: 361 FEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 507
FEKNFI QG Y+NR+VY++LD+GW LLR FP E LKRIP A++YPR
Sbjct: 399 FEKNFIAQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQTTLAEFYPR 447
>sp|P31408|VATB2_BOVIN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit)
Length = 511
Score = 301 bits (772), Expect = 1e-81
Identities = 144/174 (82%), Positives = 160/174 (91%)
Frame = +1
Query: 1 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 180
AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS
Sbjct: 338 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 397
Query: 181 LSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTK 360
LSRLMKSAIGEGMTR+DH+DVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFL K
Sbjct: 398 LSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQK 457
Query: 361 FEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPRPTGQN 522
FE+NFI QG Y+NR+VY++LD+GW LLR FP E LKRIP +++YPR + ++
Sbjct: 458 FERNFIAQGPYENRTVYETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDSAKH 511
>sp|P21281|VATB2_HUMAN Vacuolar ATP synthase subunit B, brain isoform (V-ATPase B2
subunit) (Vacuolar proton pump B isoform 2)
(Endomembrane proton pump 58 kDa subunit) (HO57)
Length = 511
Score = 300 bits (768), Expect = 3e-81
Identities = 143/174 (82%), Positives = 160/174 (91%)
Frame = +1
Query: 1 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 180
AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS
Sbjct: 338 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 397
Query: 181 LSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTK 360
LSRLMKSAIGEGMTR+DH+DVSNQLYACYAIGKDVQAMKAVVGEEAL+ +DLLYLEFL K
Sbjct: 398 LSRLMKSAIGEGMTRKDHADVSNQLYACYAIGKDVQAMKAVVGEEALTSDDLLYLEFLQK 457
Query: 361 FEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPRPTGQN 522
FE+NFI QG Y+NR+V+++LD+GW LLR FP E LKRIP +++YPR + ++
Sbjct: 458 FERNFIAQGPYENRTVFETLDIGWQLLRIFPKEMLKRIPQSTLSEFYPRDSAKH 511
>sp|P31407|VATB1_BOVIN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
subunit) (Vacuolar proton pump B isoform 1)
(Endomembrane proton pump 58 kDa subunit)
Length = 513
Score = 296 bits (757), Expect = 6e-80
Identities = 145/178 (81%), Positives = 156/178 (87%)
Frame = +1
Query: 1 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 180
AGRVEGR GSITQIPILTMPNDDITHPIPDLTG+ITEGQIYVDRQLHNRQIYPPINVLPS
Sbjct: 332 AGRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPS 391
Query: 181 LSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTK 360
LSRLMKSAIGEGMTR+DH DVSNQLYACYAIGKDVQAMKAVVGEEAL+ EDLLYLEFL K
Sbjct: 392 LSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEALTSEDLLYLEFLQK 451
Query: 361 FEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPRPTGQNTAQA 534
FEK FINQG Y+ RSV++SLDLGW LLRTFP E LKRIP + +++ R +A
Sbjct: 452 FEKKFINQGPYEKRSVFESLDLGWKLLRTFPKEMLKRIPQNIIDEFFSREGAPQDTEA 509
>sp|P15313|VATB1_HUMAN Vacuolar ATP synthase subunit B, kidney isoform (V-ATPase B1
subunit) (Vacuolar proton pump B isoform 1)
(Endomembrane proton pump 58 kDa subunit)
Length = 513
Score = 295 bits (756), Expect = 7e-80
Identities = 144/169 (85%), Positives = 154/169 (91%)
Frame = +1
Query: 1 AGRVEGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPS 180
AGRVEGR GSITQIPILTMPNDDITHPIPDLTG+ITEGQIYVDRQLHNRQIYPPINVLPS
Sbjct: 332 AGRVEGRGGSITQIPILTMPNDDITHPIPDLTGFITEGQIYVDRQLHNRQIYPPINVLPS 391
Query: 181 LSRLMKSAIGEGMTREDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSQEDLLYLEFLTK 360
LSRLMKSAIGEGMTR+DH DVSNQLYACYAIGKDVQAMKAVVGEEAL+ EDLLYLEFL K
Sbjct: 392 LSRLMKSAIGEGMTRKDHGDVSNQLYACYAIGKDVQAMKAVVGEEALTSEDLLYLEFLQK 451
Query: 361 FEKNFINQGSYDNRSVYDSLDLGWDLLRTFPPEQLKRIPDKMKAKYYPR 507
FEKNFINQG Y+NRS+++SLDL W LLR FP E LKRIP + ++Y R
Sbjct: 452 FEKNFINQGPYENRSMFESLDLSWKLLRIFPKEMLKRIPQAVIDEFYSR 500
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,272,661
Number of Sequences: 369166
Number of extensions: 1716530
Number of successful extensions: 5138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5034
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)