Planaria EST Database

DrC_00025

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00025
         (803 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q76LN2|NU5M_ROUAM  NADH-ubiquinone oxidoreductase chain 5...    33   0.70 
sp|Q58017|T2M3_METJA  Type II restriction enzyme MjaIII (End...    31   4.5  
sp|Q92BD8|YG12_LISIN  Hypothetical UPF0173 metal-dependent h...    30   7.7  

>sp|Q76LN2|NU5M_ROUAM NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 605

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 2   NSARG*FKMSPPSGKSFFSKLNGLIPTSAHHLRPIIAVL 118
           N+A    K++PPS    FS L G  PT  H L+P+ ++L
Sbjct: 505 NTATQNLKLTPPSNYLKFSNLLGYFPTIMHRLQPLTSLL 543

>sp|Q58017|T2M3_METJA Type II restriction enzyme MjaIII (Endonuclease MjaIII) (R.MjaIII)
          Length = 290

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +2

Query: 143 LCVLSSGRHILYNPDIEVNRLESKAEKKISDFKL-----LFKDHDEEDLMPVRLLKNGGI 307
           L  +   +  + N ++E+  LE K +K ++D ++      FK+   EDL+  R +KN   
Sbjct: 70  LIAVRDNKITILNENMELETLEFKEKKYLTDEEIERYYKFFKETGLEDLLKNRKIKNLVD 129

Query: 308 RIYGVNDGQEEAA 346
            ++GV  G +  A
Sbjct: 130 YVFGVEVGMDTNA 142

>sp|Q92BD8|YG12_LISIN Hypothetical UPF0173 metal-dependent hydrolase lin1612
          Length = 228

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
 Frame = +2

Query: 149 VLSSGRHILYNPDIEVN-RLESKAEKKISDFKLLFKDHDEEDLMPVRLLKNGGIRI---- 313
           +++    IL +P I  N + + KAE+++ DF +L   HD+     V + KN G  +    
Sbjct: 13  IITGNTTILVDPFISGNEKCDLKAEEQMPDFIVLSHGHDDHVGDTVEIAKNSGATVICNA 72

Query: 314 -----YGVNDGQEEAA 346
                  V DG E  A
Sbjct: 73  DLASFLAVEDGLENIA 88

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,128,337
Number of Sequences: 369166
Number of extensions: 1210426
Number of successful extensions: 2712
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2710
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7618580670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00025

  1. Dr_sW_012_J13
  2. Dr_sW_028_G23
  3. Dr_sW_001_K11
  4. Dr_sW_015_H15
  5. Dr_sW_014_F02
  6. Dr_sW_010_P06
  7. Dr_sW_027_A23
  8. Dr_sW_020_N12
  9. Dr_sW_013_L20
  10. Dr_sW_004_J20
  11. Dr_sW_013_N03