Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_J13
(406 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q58017|T2M3_METJA Type II restriction enzyme MjaIII (End... 31 1.1
sp|Q92BD8|YG12_LISIN Hypothetical UPF0173 metal-dependent h... 30 1.8
sp|Q8Y6V4|YF77_LISMO Hypothetical UPF0173 metal-dependent h... 30 2.4
sp|Q71Z90|Y1599_LISMF Hypothetical UPF0173 metal-dependent ... 30 2.4
sp|P10822|ICW3_PSOTE Chymotrypsin inhibitor 3 precursor (WC... 28 7.0
sp|Q72CF4|RPOA_DESVH DNA-directed RNA polymerase alpha chai... 28 7.0
sp|Q09796|YAA2_SCHPO Hypothetical protein C22G7.02 in chrom... 28 9.1
>sp|Q58017|T2M3_METJA Type II restriction enzyme MjaIII (Endonuclease MjaIII) (R.MjaIII)
Length = 290
Score = 30.8 bits (68), Expect = 1.1
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +3
Query: 72 LCVLSSGRHILYNPDIEVNRLESKAEKKISDFKL-----LFKDHDEEDLMPVRLLKNGGI 236
L + + + N ++E+ LE K +K ++D ++ FK+ EDL+ R +KN
Sbjct: 70 LIAVRDNKITILNENMELETLEFKEKKYLTDEEIERYYKFFKETGLEDLLKNRKIKNLVD 129
Query: 237 RIYGVNDGQEEAA 275
++GV G + A
Sbjct: 130 YVFGVEVGMDTNA 142
>sp|Q92BD8|YG12_LISIN Hypothetical UPF0173 metal-dependent hydrolase lin1612
Length = 228
Score = 30.0 bits (66), Expect = 1.8
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = +3
Query: 78 VLSSGRHILYNPDIEVN-RLESKAEKKISDFKLLFKDHDEEDLMPVRLLKNGGIRI---- 242
+++ IL +P I N + + KAE+++ DF +L HD+ V + KN G +
Sbjct: 13 IITGNTTILVDPFISGNEKCDLKAEEQMPDFIVLSHGHDDHVGDTVEIAKNSGATVICNA 72
Query: 243 -----YGVNDGQEEAA 275
V DG E A
Sbjct: 73 DLASFLAVEDGLENIA 88
>sp|Q8Y6V4|YF77_LISMO Hypothetical UPF0173 metal-dependent hydrolase lmo1577
Length = 228
Score = 29.6 bits (65), Expect = 2.4
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = +3
Query: 78 VLSSGRHILYNPDIEVN-RLESKAEKKISDFKLLFKDHDEEDLMPVRLLKNGGIRI---- 242
+++ IL +P I N + + KAE+++ DF +L HD+ V + KN G +
Sbjct: 13 IITGDTTILVDPFISGNEKCDLKAEEQMPDFIVLSHGHDDHVGDTVEIAKNSGATVICNA 72
Query: 243 -----YGVNDGQEEAA 275
V DG E A
Sbjct: 73 DLASFLAVEDGLENMA 88
>sp|Q71Z90|Y1599_LISMF Hypothetical UPF0173 metal-dependent hydrolase LMOf2365_1599
Length = 228
Score = 29.6 bits (65), Expect = 2.4
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = +3
Query: 78 VLSSGRHILYNPDIEVN-RLESKAEKKISDFKLLFKDHDEEDLMPVRLLKNGGIRI---- 242
+++ IL +P I N + + KAE+++ DF +L HD+ V + KN G +
Sbjct: 13 IITGDTTILVDPFISGNDKCDLKAEEQMPDFIVLSHGHDDHVGDTVEIAKNSGATVICNA 72
Query: 243 -----YGVNDGQEEAA 275
V DG E A
Sbjct: 73 DLASFLAVEDGLENIA 88
>sp|P10822|ICW3_PSOTE Chymotrypsin inhibitor 3 precursor (WCI-3)
Length = 207
Score = 28.1 bits (61), Expect = 7.0
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 114 DIEVNRLESKAEKKISDFKLLFKDHDEEDL 203
DI V + E + I +KLL+ HDEED+
Sbjct: 137 DILVFKFEKVSHSNIHVYKLLYCQHDEEDV 166
>sp|Q72CF4|RPOA_DESVH DNA-directed RNA polymerase alpha chain (RNAP alpha subunit)
(Transcriptase alpha chain) (RNA polymerase alpha
subunit)
Length = 347
Score = 28.1 bits (61), Expect = 7.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 226 TEELEYMELMMDKRRQLLNID*LSNSEIRVIN 321
TEE +Y+EL +DKR + D +N + V+N
Sbjct: 106 TEEPQYLELKVDKRGAITAGDVRTNQHVMVLN 137
>sp|Q09796|YAA2_SCHPO Hypothetical protein C22G7.02 in chromosome I
Length = 990
Score = 27.7 bits (60), Expect = 9.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -2
Query: 165 SQISSFLLCFLSDLPQYLDCTKYVYQN*VHIMKHQLHKKIVRQL 34
SQ+ S CFL + PQYL+ + V + +HI + + + R +
Sbjct: 532 SQLLSSCSCFLQNHPQYLNISLPVLFDALHISETSIQMTVSRSI 575
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,942,063
Number of Sequences: 369166
Number of extensions: 551621
Number of successful extensions: 1339
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)