Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_013_N03
(367 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8R4H4|CBPA5_MOUSE Carboxypeptidase A5 precursor 30 2.3
sp|Q96DT6|ATG4C_HUMAN Cysteine protease ATG4C (Autophagy-re... 28 5.1
sp|P09088|MEC3_CAEEL Mechanosensory protein 3 28 5.1
sp|P34765|MEC3_CAEVU Mechanosensory protein 3 28 5.1
>sp|Q8R4H4|CBPA5_MOUSE Carboxypeptidase A5 precursor
Length = 436
Score = 29.6 bits (65), Expect = 2.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 355 NFIKNIPNSIQKLHLLKHFSNECVVVFEFSS 263
NF+ N + K+H+ K F N ++V +FS+
Sbjct: 151 NFVAEHSNLVSKIHIGKSFENRSILVLKFST 181
>sp|Q96DT6|ATG4C_HUMAN Cysteine protease ATG4C (Autophagy-related protein 4 homolog C)
(Autophagin-3) (Autophagy-related cysteine endopeptidase
3) (AUT-like 3 cysteine endopeptidase)
Length = 458
Score = 28.5 bits (62), Expect = 5.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 128 DCTNYNSEIISKQSMNRTIYN 66
DCT YNS++I KQS + T N
Sbjct: 263 DCTVYNSDVIDKQSASMTSDN 283
>sp|P09088|MEC3_CAEEL Mechanosensory protein 3
Length = 321
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = +2
Query: 71 KLFYSLIVSI*FRCCSLCSRY-----QIILQNSLFTFNC 172
KL L+ + CCSLC R+ QI++ +++ T +C
Sbjct: 104 KLKAGLVFHVECHCCSLCGRHLSPGEQILVDDTMMTVSC 142
>sp|P34765|MEC3_CAEVU Mechanosensory protein 3
Length = 320
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = +2
Query: 71 KLFYSLIVSI*FRCCSLCSRY-----QIILQNSLFTFNC 172
KL L+ + CCSLC R+ QI++ +++ T +C
Sbjct: 104 KLKAGLVFHVECHCCSLCGRHLSPGEQILVDDTMMTVSC 142
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,885,318
Number of Sequences: 369166
Number of extensions: 458689
Number of successful extensions: 1001
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 68,354,980
effective HSP length: 88
effective length of database: 52,098,300
effective search space used: 1719243900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)