Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_G23
(648 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q92BD8|YG12_LISIN Hypothetical UPF0173 metal-dependent h... 33 0.83
sp|Q8Y6V4|YF77_LISMO Hypothetical UPF0173 metal-dependent h... 32 1.1
sp|Q71Z90|Y1599_LISMF Hypothetical UPF0173 metal-dependent ... 32 1.1
>sp|Q92BD8|YG12_LISIN Hypothetical UPF0173 metal-dependent hydrolase lin1612
Length = 228
Score = 32.7 bits (73), Expect = 0.83
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Frame = +2
Query: 119 VLSSGRHILYNPDIEVN-RLESKAEKKISDFKLLFKDHDEEVLMPVRLLKNGGIRI---- 283
+++ IL +P I N + + KAE+++ DF +L HD+ V V + KN G +
Sbjct: 13 IITGNTTILVDPFISGNEKCDLKAEEQMPDFIVLSHGHDDHVGDTVEIAKNSGATVICNA 72
Query: 284 -----YGVNDGQEEAA 316
V DG E A
Sbjct: 73 DLASFLAVEDGLENIA 88
>sp|Q8Y6V4|YF77_LISMO Hypothetical UPF0173 metal-dependent hydrolase lmo1577
Length = 228
Score = 32.3 bits (72), Expect = 1.1
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Frame = +2
Query: 119 VLSSGRHILYNPDIEVN-RLESKAEKKISDFKLLFKDHDEEVLMPVRLLKNGGIRI---- 283
+++ IL +P I N + + KAE+++ DF +L HD+ V V + KN G +
Sbjct: 13 IITGDTTILVDPFISGNEKCDLKAEEQMPDFIVLSHGHDDHVGDTVEIAKNSGATVICNA 72
Query: 284 -----YGVNDGQEEAA 316
V DG E A
Sbjct: 73 DLASFLAVEDGLENMA 88
>sp|Q71Z90|Y1599_LISMF Hypothetical UPF0173 metal-dependent hydrolase LMOf2365_1599
Length = 228
Score = 32.3 bits (72), Expect = 1.1
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Frame = +2
Query: 119 VLSSGRHILYNPDIEVN-RLESKAEKKISDFKLLFKDHDEEVLMPVRLLKNGGIRI---- 283
+++ IL +P I N + + KAE+++ DF +L HD+ V V + KN G +
Sbjct: 13 IITGDTTILVDPFISGNDKCDLKAEEQMPDFIVLSHGHDDHVGDTVEIAKNSGATVICNA 72
Query: 284 -----YGVNDGQEEAA 316
V DG E A
Sbjct: 73 DLASFLAVEDGLENIA 88
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,569,851
Number of Sequences: 369166
Number of extensions: 999339
Number of successful extensions: 2176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2174
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)