Planaria EST Database

DrC_01122

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01122
         (1176 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9H3K2|GHITM_HUMAN  Growth hormone inducible transmembran...   234   3e-61
sp|Q9ZKT1|Y920_HELPJ  Hypothetical protein JHP0854                 40   0.010
sp|Q9PIQ8|Y236_CAMJE  Hypothetical protein Cj0236c                 40   0.013
sp|O25578|Y920_HELPY  Hypothetical protein HP0920                  40   0.017
sp|Q9VSH3|BI1_DROME  Probable Bax inhibitor-1 (BI-1)               37   0.11 
sp|P74759|RGYR_SULSH  Reverse gyrase [Includes: Helicase ; T...    34   0.93 
sp|Q97ZF5|RGYR2_SULSO  Reverse gyrase 2 [Includes: Helicase ...    33   1.2  
sp|Q9HSB9|TRPA_HALSA  Tryptophan synthase alpha chain              33   1.6  
sp|O51489|Y539_BORBU  Hypothetical protein BB0539                  33   2.1  
sp|Q47142|HCAT_ECOLI  Probable 3-phenylpropionic acid transp...    32   3.5  

>sp|Q9H3K2|GHITM_HUMAN Growth hormone inducible transmembrane protein (Dermal papilla
           derived protein 2) (Transmembrane BAX inhibitor
           motif-containing protein 5)
          Length = 345

 Score =  234 bits (598), Expect = 3e-61
 Identities = 128/307 (41%), Positives = 183/307 (59%), Gaps = 4/307 (1%)
 Frame = +1

Query: 85  PMRNYAGNFRM--RQSRNTKQVAHESFKPTSTE--KAANTFKXXXXXXXXTGIGIICYYA 252
           P R YA   R+  R+ R  +++   + +P+  +  K     +         G+G +CYY 
Sbjct: 41  PSREYATKTRIGIRRGRTGQELKEAALEPSMEKIFKIDQMGRWFVAGGAAVGLGALCYYG 100

Query: 253 MQQTHDPFNIINKSAVWPAYVKERIHSTYTYFAMSNLATAASAVAVFRNPTLFKYASRAG 432
           +  +++    I K+ +WP YVK+RIHSTY Y A S   TA SA+A+ R P L  +  R  
Sbjct: 101 LGLSNE-IGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTALSAIAISRTPVLMNFMMRGS 159

Query: 433 MASILLGFVGVIGSGIIMRSIPYDETSLLKHAAWLLHCGTLGFFVAPVCMLGGQVIQRAA 612
             +I + F  ++G+G+++RSIPYD++   KH AWLLH G +G  VAP+ +LGG ++ RAA
Sbjct: 160 WVTIGVTFAAMVGAGMLVRSIPYDQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAA 219

Query: 613 VYTLGIVGGLSAVAVTAPSDKFLYMGVPLAMGLGLVFATSIAGMFLNPLSQLGAAALSFN 792
            YT GIVGGLS VA+ APS+KFL MG PL +GLGLVF +S+  MFL P +  GA   S  
Sbjct: 220 WYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFVSSLGSMFLPPTTVAGATLYSVA 279

Query: 793 XXXXXXXXXXXXXXDTQHVIKRAEEHPPGRTMPAYDPINNSMNIFLDTLNIFIRLVTIFG 972
                         DTQ VIKRAE  P    +  YDPIN+ ++I++DTLNIF+R+ T+  
Sbjct: 280 MYGGLVLFSMFLLYDTQKVIKRAEVSPM-YGVQKYDPINSMLSIYMDTLNIFMRVATMLA 338

Query: 973 MGNSKKR 993
            G ++K+
Sbjct: 339 TGGNRKK 345

>sp|Q9ZKT1|Y920_HELPJ Hypothetical protein JHP0854
          Length = 230

 Score = 40.4 bits (93), Expect = 0.010
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
 Frame = +1

Query: 553 LGFFVAPVCMLGGQVIQRAAVYTLGIVGGLSAVAVTAPSDKFLYMGVPLAMGLGLVFATS 732
           LG  +A   +  G V Q   + T  IV GL +V      +    MG  L + L +V   S
Sbjct: 103 LGMVIAKAGL--GAVWQALGMTT--IVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCS 158

Query: 733 IAGMFL-NPLSQL---GAAALSFNXXXXXXXXXXXXXXDTQHVIKRAEEHPPGRTMPAYD 900
           +  +FL +P+ Q+   GA+A+ F+              DTQ+++K   +           
Sbjct: 159 LINLFLGSPMFQVVIAGASAILFSLYIAY---------DTQNIVKGMYD----------S 199

Query: 901 PINNSMNIFLDTLNIFIRLVTIFGMGNSKKR 993
           PI+ +++++LD LN+FI ++ I G+ + + +
Sbjct: 200 PIDAAVSLYLDFLNVFISILQIIGIFSDRDK 230

>sp|Q9PIQ8|Y236_CAMJE Hypothetical protein Cj0236c
          Length = 231

 Score = 40.0 bits (92), Expect = 0.013
 Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 6/140 (4%)
 Frame = +1

Query: 586 GGQVIQRAAVYTLGIVGGLSAVAVTAPSDKFLYMGVPLAMGLGLVFATSIAGMFLNP--- 756
           GG +I +A   T     GLS  A+    D F  MG  L + L ++ A S+  +F      
Sbjct: 114 GGIIIAQAFALTTVAFAGLSVFAMNTKKD-FTVMGKALFIVLIVIVAASLLNLFFQSSIV 172

Query: 757 ---LSQLGAAALSFNXXXXXXXXXXXXXXDTQHVIKRAEEHPPGRTMPAYDPINNSMNIF 927
              +S + A   SF               DTQ++I+   E           PI  ++ ++
Sbjct: 173 NLAISAVAAILFSF-----------YILYDTQNIIRGNYE----------TPIEGAVALY 211

Query: 928 LDTLNIFIRLVTIFGMGNSK 987
           LD +N+F+ L+ I    NS+
Sbjct: 212 LDFVNLFVSLLNILRSFNSR 231

>sp|O25578|Y920_HELPY Hypothetical protein HP0920
          Length = 230

 Score = 39.7 bits (91), Expect = 0.017
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
 Frame = +1

Query: 628 IVGGLSAVAVTAPSDKFLYMGVPLAMGLGLVFATSIAGMFL-NPLSQL---GAAALSFNX 795
           IV GL +V      +    MG  L + L +V   S+  +FL +P+ Q+   GA+A+ F+ 
Sbjct: 124 IVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASAILFSL 183

Query: 796 XXXXXXXXXXXXXDTQHVIKRAEEHPPGRTMPAYDPINNSMNIFLDTLNIFIRLVTIFGM 975
                        DTQ+++K   +           PI+ +++++LD LN+FI ++ I G+
Sbjct: 184 YIAY---------DTQNIVKGMYD----------SPIDAAVSLYLDFLNVFISILQIIGI 224

>sp|Q9VSH3|BI1_DROME Probable Bax inhibitor-1 (BI-1)
          Length = 245

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 5/233 (2%)
 Frame = +1

Query: 310 YVKERIHSTYTYFAMSNLATAASAVAVFRNPTLFKYASRAGMASILLGFVGVIGSGIIMR 489
           YV+E +   Y     +  ATA  A+   R+         A +A+++L    V+G      
Sbjct: 26  YVREHLSKVYMVLGSTAAATAMGAMLQMRD--FLDLGVLAAVATLVL----VLGLHFYKD 79

Query: 490 SIPYDETSL-LKHAAWLLHCGTLGFFVAPVCMLGGQVIQRAAVYTLGIVGGLSAVAVTAP 666
                 T L + +A       TLG  +  +C +   +I  A   T      LS  A+ A 
Sbjct: 80  DGKNYYTRLGMLYAFGFCSGQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAE 139

Query: 667 SDKFLYMGVPLAMGLGLVFATSIAGM----FLNPLSQLGAAALSFNXXXXXXXXXXXXXX 834
             K+LY+G  L   +  +   S+  M    +   ++QL                      
Sbjct: 140 QGKYLYLGGMLVSVINTMALLSLFNMVFKSYFVQVTQLYVGVF---------VMAAFIVY 190

Query: 835 DTQHVIKRAEEHPPGRTMPAYDPINNSMNIFLDTLNIFIRLVTIFGMGNSKKR 993
           DTQ+++++             D + +++++F D L++F RL+ I      +K+
Sbjct: 191 DTQNIVEKCRN-------GNRDVVQHALDLFFDVLSMFRRLLIILTQKEERKQ 236

>sp|P74759|RGYR_SULSH Reverse gyrase [Includes: Helicase ; Topoisomerase ]
          Length = 1166

 Score = 33.9 bits (76), Expect = 0.93
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 666 RCSDCNCTKSTNNSKCVYCGSLYYLSAQHT 577
           +C DCN T S  + KC YCGS    +AQ T
Sbjct: 664 KCLDCNKTFSIASDKCPYCGSTNVQTAQTT 693

>sp|Q97ZF5|RGYR2_SULSO Reverse gyrase 2 [Includes: Helicase ; Topoisomerase ]
          Length = 1166

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 666 RCSDCNCTKSTNNSKCVYCGSLYYLSAQHT 577
           +C DCN   S+ + KC YCGS    SAQ T
Sbjct: 664 KCLDCNKIFSSASDKCPYCGSANLQSAQTT 693

>sp|Q9HSB9|TRPA_HALSA Tryptophan synthase alpha chain
          Length = 276

 Score = 33.1 bits (74), Expect = 1.6
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
 Frame = +1

Query: 406 LFKYASRAGMASILLGFVGVIGSGIIMRSIPYDETSLLKHAAWLLHCGTLGFFVAPVCML 585
           LF+Y  RAG A+ +        SG ++  +P DE+  L+ A    H   L F VAP    
Sbjct: 100 LFQYGDRAGPAAFVSAAAEAGVSGFVVPDLPVDESGPLREAC-RAHGLDLVFVVAPTTTA 158

Query: 586 GGQV----IQRAAVYTLGIVGGLSA---VAVTAPS--DKFLYMGVPLAMGLGL 717
             +     +    VY  G VG   A   V+   P       +  +P A+G G+
Sbjct: 159 DRRERMLDLTTGFVYVQGRVGTTGAREEVSAATPDALAALQHTDIPKAVGFGV 211

>sp|O51489|Y539_BORBU Hypothetical protein BB0539
          Length = 232

 Score = 32.7 bits (73), Expect = 2.1
 Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 13/217 (5%)
 Frame = +1

Query: 361 LATAASAVAVFRNPTLFKYA---SRAGMASILLGFVGVIGSGIIMRSIPYDETSLLKHAA 531
           L +A  A A   N T+       S + MA IL+ F  V      +  I  +  + L    
Sbjct: 30  LISAVFAYATSENQTIKAIIFSNSMSFMAMILIQFGLVYAISGALNKISSNTATAL---- 85

Query: 532 WLLHCGTLGFFVAPVCMLGGQVIQRAAVYTLGIVGG----LSAVAVTAPSDKFLYMGVPL 699
           +LL+    G  ++ + M+     Q + V+T GI  G    +S    T  +D    MG  L
Sbjct: 86  FLLYSALTGVTLSSIFMI---YTQGSIVFTFGITAGTFLGMSVYGYTTTTD-LTKMGSYL 141

Query: 700 AMGLGLVFATSIAGMFLNP------LSQLGAAALSFNXXXXXXXXXXXXXXDTQHVIKRA 861
            MGL  +   S+  MF         +S LG    +                D Q++ K  
Sbjct: 142 IMGLWGIIIASLVNMFFRSSGLNFLISILGVVIFT-----------GLTAYDVQNISKMD 190

Query: 862 EEHPPGRTMPAYDPINNSMNIFLDTLNIFIRLVTIFG 972
           +       +     +  S+ ++LD +N+F+ L+   G
Sbjct: 191 KMLQDDTEIKNRMAVVASLKLYLDFINLFLYLLRFLG 227

>sp|Q47142|HCAT_ECOLI Probable 3-phenylpropionic acid transporter
          Length = 379

 Score = 32.0 bits (71), Expect = 3.5
 Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
 Frame = +1

Query: 358 NLATAASAVAVFRNPTLFKYASRAGMASILLGFVGVIGSGIIMRSIPYDETSLLKHAAWL 537
           +L   A  +    +  LF+  S   M  ++    GV+  GI+  +       +++    +
Sbjct: 244 SLGVVAEVIIFALSNKLFRRCSARDML-LISAICGVVRWGIMGATTALPWLIVVQ----I 298

Query: 538 LHCGTLGFFVAPVCML----------GGQVIQRAAVYTLGIVGGLSAVAVTAPSDKFLYM 687
           LHCGT       VC L          G +VI+  AVY+   +GG  A+        + Y+
Sbjct: 299 LHCGTF-----TVCHLAAMRYIAARQGSEVIRLQAVYSAVAMGGSIAIMTVFAGFLYQYL 353

Query: 688 GVPLAMGLGLVFATSIAGMFLNP 756
           G  +   + LV   ++  MFL P
Sbjct: 354 GHGVFWVMALV---ALPAMFLRP 373

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,581,070
Number of Sequences: 369166
Number of extensions: 2557863
Number of successful extensions: 6429
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6421
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 13199419150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01122

  1. Dr_sW_028_F16
  2. Dr_sW_015_P19
  3. Dr_sW_020_P18