Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_F16
(395 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H3K2|GHITM_HUMAN Growth hormone inducible transmembran... 61 7e-10
sp|P40771|RAPH_BACSU Response regulator aspartate phosphata... 28 5.1
sp|Q9XSP1|KCNE1_FELCA Potassium voltage-gated channel subfa... 28 6.6
>sp|Q9H3K2|GHITM_HUMAN Growth hormone inducible transmembrane protein (Dermal papilla
derived protein 2) (Transmembrane BAX inhibitor
motif-containing protein 5)
Length = 345
Score = 61.2 bits (147), Expect = 7e-10
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Frame = +1
Query: 85 PMRNYAGNFRM--RQSRNTKQVAHESFKPTSTE--KAANTFKXXXXXXXXTGIGIICYYA 252
P R YA R+ R+ R +++ + +P+ + K + G+G +CYY
Sbjct: 41 PSREYATKTRIGIRRGRTGQELKEAALEPSMEKIFKIDQMGRWFVAGGAAVGLGALCYYG 100
Query: 253 MQQTHDPFNIINKSAVWPAYVKERIHSTYTYFAMSNLATAASAVAV 390
+ +++ I K+ +WP YVK+RIHSTY Y A S TA SA+A+
Sbjct: 101 LGLSNE-IGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTALSAIAI 145
>sp|P40771|RAPH_BACSU Response regulator aspartate phosphatase H (PSP28)
Length = 431
Score = 28.5 bits (62), Expect = 5.1
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +1
Query: 43 KMQLCFCRHL---KQSFPMRNYAGNFRMRQSRNTKQVAHESFKPTSTEKA 183
K+ +C L SFP +G F+ RNT + H +K + +KA
Sbjct: 380 KVMMCLAVTLVFGSMSFPTLTNSGGFKESTDRNTTYIDHSPYKLSDQKKA 429
>sp|Q9XSP1|KCNE1_FELCA Potassium voltage-gated channel subfamily E member 1 (IKs producing
slow voltage-gated potassium channel beta subunit Mink)
(Minimal potassium channel) (Delayed rectifier potassium
channel subunit IsK)
Length = 129
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 8/45 (17%)
Frame = +1
Query: 229 IGIICYYA----MQQTHDPFNIINKSAVW----PAYVKERIHSTY 339
+GI+ Y ++ +HDPFN+ +S W AY++ R+ +Y
Sbjct: 59 LGIMLSYIRSKKLEHSHDPFNVYIESDTWQEKDKAYLQARVLESY 103
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,291,162
Number of Sequences: 369166
Number of extensions: 470607
Number of successful extensions: 961
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 68,354,980
effective HSP length: 97
effective length of database: 50,435,685
effective search space used: 1714813290
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)