Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_020_P18
(955 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H3K2|GHITM_HUMAN Growth hormone inducible transmembran... 231 3e-60
sp|Q9ZKT1|Y920_HELPJ Hypothetical protein JHP0854 40 0.007
sp|Q9PIQ8|Y236_CAMJE Hypothetical protein Cj0236c 40 0.010
sp|O25578|Y920_HELPY Hypothetical protein HP0920 40 0.013
sp|Q9VSH3|BI1_DROME Probable Bax inhibitor-1 (BI-1) 37 0.082
sp|P74759|RGYR_SULSH Reverse gyrase [Includes: Helicase ; T... 34 0.69
sp|Q97ZF5|RGYR2_SULSO Reverse gyrase 2 [Includes: Helicase ... 33 0.90
sp|Q9HSB9|TRPA_HALSA Tryptophan synthase alpha chain 33 1.2
sp|O51489|Y539_BORBU Hypothetical protein BB0539 33 1.5
sp|Q47142|HCAT_ECOLI Probable 3-phenylpropionic acid transp... 32 2.6
>sp|Q9H3K2|GHITM_HUMAN Growth hormone inducible transmembrane protein (Dermal papilla
derived protein 2) (Transmembrane BAX inhibitor
motif-containing protein 5)
Length = 345
Score = 231 bits (588), Expect = 3e-60
Identities = 119/256 (46%), Positives = 164/256 (64%)
Frame = +2
Query: 5 GIGIICYYAMQQTHDPFNIINKSAVWPAYVKERIHSTYTYFAMSNLATAASAVAVFRNPT 184
G+G +CYY + +++ I K+ +WP YVK+RIHSTY Y A S TA SA+A+ R P
Sbjct: 92 GLGALCYYGLGLSNE-IGAIEKAVIWPQYVKDRIHSTYMYLAGSIGLTALSAIAISRTPV 150
Query: 185 LFKYASRAGMASILLGFVGVIGSGIIMRSIPYDETSLLKHAAWLLHCGTLGFFVAPVCML 364
L + R +I + F ++G+G+++RSIPYD++ KH AWLLH G +G VAP+ +L
Sbjct: 151 LMNFMMRGSWVTIGVTFAAMVGAGMLVRSIPYDQSPGPKHLAWLLHSGVMGAVVAPLTIL 210
Query: 365 GGQVIQRAAVYTLGIVGGLSAVAVTAPSDKFLYMGVPLAMGLGLVFATSIAGMFLNPLSQ 544
GG ++ RAA YT GIVGGLS VA+ APS+KFL MG PL +GLGLVF +S+ MFL P +
Sbjct: 211 GGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFVSSLGSMFLPPTTV 270
Query: 545 LGAAALSFNXXXXXXXXXXXXXXDTQHVIKRAEEHPPGRTMPAYDPINNSMNIFLDTLNI 724
GA S DTQ VIKRAE P + YDPIN+ ++I++DTLNI
Sbjct: 271 AGATLYSVAMYGGLVLFSMFLLYDTQKVIKRAEVSPM-YGVQKYDPINSMLSIYMDTLNI 329
Query: 725 FIRLVTIFGMGNSKKR 772
F+R+ T+ G ++K+
Sbjct: 330 FMRVATMLATGGNRKK 345
>sp|Q9ZKT1|Y920_HELPJ Hypothetical protein JHP0854
Length = 230
Score = 40.4 bits (93), Expect = 0.007
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Frame = +2
Query: 332 LGFFVAPVCMLGGQVIQRAAVYTLGIVGGLSAVAVTAPSDKFLYMGVPLAMGLGLVFATS 511
LG +A + G V Q + T IV GL +V + MG L + L +V S
Sbjct: 103 LGMVIAKAGL--GAVWQALGMTT--IVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCS 158
Query: 512 IAGMFL-NPLSQL---GAAALSFNXXXXXXXXXXXXXXDTQHVIKRAEEHPPGRTMPAYD 679
+ +FL +P+ Q+ GA+A+ F+ DTQ+++K +
Sbjct: 159 LINLFLGSPMFQVVIAGASAILFSLYIAY---------DTQNIVKGMYD----------S 199
Query: 680 PINNSMNIFLDTLNIFIRLVTIFGMGNSKKR 772
PI+ +++++LD LN+FI ++ I G+ + + +
Sbjct: 200 PIDAAVSLYLDFLNVFISILQIIGIFSDRDK 230
>sp|Q9PIQ8|Y236_CAMJE Hypothetical protein Cj0236c
Length = 231
Score = 40.0 bits (92), Expect = 0.010
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 6/140 (4%)
Frame = +2
Query: 365 GGQVIQRAAVYTLGIVGGLSAVAVTAPSDKFLYMGVPLAMGLGLVFATSIAGMFLNP--- 535
GG +I +A T GLS A+ D F MG L + L ++ A S+ +F
Sbjct: 114 GGIIIAQAFALTTVAFAGLSVFAMNTKKD-FTVMGKALFIVLIVIVAASLLNLFFQSSIV 172
Query: 536 ---LSQLGAAALSFNXXXXXXXXXXXXXXDTQHVIKRAEEHPPGRTMPAYDPINNSMNIF 706
+S + A SF DTQ++I+ E PI ++ ++
Sbjct: 173 NLAISAVAAILFSF-----------YILYDTQNIIRGNYE----------TPIEGAVALY 211
Query: 707 LDTLNIFIRLVTIFGMGNSK 766
LD +N+F+ L+ I NS+
Sbjct: 212 LDFVNLFVSLLNILRSFNSR 231
>sp|O25578|Y920_HELPY Hypothetical protein HP0920
Length = 230
Score = 39.7 bits (91), Expect = 0.013
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Frame = +2
Query: 407 IVGGLSAVAVTAPSDKFLYMGVPLAMGLGLVFATSIAGMFL-NPLSQL---GAAALSFNX 574
IV GL +V + MG L + L +V S+ +FL +P+ Q+ GA+A+ F+
Sbjct: 124 IVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASAILFSL 183
Query: 575 XXXXXXXXXXXXXDTQHVIKRAEEHPPGRTMPAYDPINNSMNIFLDTLNIFIRLVTIFGM 754
DTQ+++K + PI+ +++++LD LN+FI ++ I G+
Sbjct: 184 YIAY---------DTQNIVKGMYD----------SPIDAAVSLYLDFLNVFISILQIIGI 224
>sp|Q9VSH3|BI1_DROME Probable Bax inhibitor-1 (BI-1)
Length = 245
Score = 37.0 bits (84), Expect = 0.082
Identities = 49/233 (21%), Positives = 90/233 (38%), Gaps = 5/233 (2%)
Frame = +2
Query: 89 YVKERIHSTYTYFAMSNLATAASAVAVFRNPTLFKYASRAGMASILLGFVGVIGSGIIMR 268
YV+E + Y + ATA A+ R+ A +A+++L V+G
Sbjct: 26 YVREHLSKVYMVLGSTAAATAMGAMLQMRD--FLDLGVLAAVATLVL----VLGLHFYKD 79
Query: 269 SIPYDETSL-LKHAAWLLHCGTLGFFVAPVCMLGGQVIQRAAVYTLGIVGGLSAVAVTAP 445
T L + +A TLG + +C + +I A T LS A+ A
Sbjct: 80 DGKNYYTRLGMLYAFGFCSGQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAE 139
Query: 446 SDKFLYMGVPLAMGLGLVFATSIAGM----FLNPLSQLGAAALSFNXXXXXXXXXXXXXX 613
K+LY+G L + + S+ M + ++QL
Sbjct: 140 QGKYLYLGGMLVSVINTMALLSLFNMVFKSYFVQVTQLYVGVF---------VMAAFIVY 190
Query: 614 DTQHVIKRAEEHPPGRTMPAYDPINNSMNIFLDTLNIFIRLVTIFGMGNSKKR 772
DTQ+++++ D + +++++F D L++F RL+ I +K+
Sbjct: 191 DTQNIVEKCRN-------GNRDVVQHALDLFFDVLSMFRRLLIILTQKEERKQ 236
>sp|P74759|RGYR_SULSH Reverse gyrase [Includes: Helicase ; Topoisomerase ]
Length = 1166
Score = 33.9 bits (76), Expect = 0.69
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 445 RCSDCNCTKSTNNSKCVYCGSLYYLSAQHT 356
+C DCN T S + KC YCGS +AQ T
Sbjct: 664 KCLDCNKTFSIASDKCPYCGSTNVQTAQTT 693
>sp|Q97ZF5|RGYR2_SULSO Reverse gyrase 2 [Includes: Helicase ; Topoisomerase ]
Length = 1166
Score = 33.5 bits (75), Expect = 0.90
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -1
Query: 445 RCSDCNCTKSTNNSKCVYCGSLYYLSAQHT 356
+C DCN S+ + KC YCGS SAQ T
Sbjct: 664 KCLDCNKIFSSASDKCPYCGSANLQSAQTT 693
>sp|Q9HSB9|TRPA_HALSA Tryptophan synthase alpha chain
Length = 276
Score = 33.1 bits (74), Expect = 1.2
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Frame = +2
Query: 185 LFKYASRAGMASILLGFVGVIGSGIIMRSIPYDETSLLKHAAWLLHCGTLGFFVAPVCML 364
LF+Y RAG A+ + SG ++ +P DE+ L+ A H L F VAP
Sbjct: 100 LFQYGDRAGPAAFVSAAAEAGVSGFVVPDLPVDESGPLREAC-RAHGLDLVFVVAPTTTA 158
Query: 365 GGQV----IQRAAVYTLGIVGGLSA---VAVTAPS--DKFLYMGVPLAMGLGL 496
+ + VY G VG A V+ P + +P A+G G+
Sbjct: 159 DRRERMLDLTTGFVYVQGRVGTTGAREEVSAATPDALAALQHTDIPKAVGFGV 211
>sp|O51489|Y539_BORBU Hypothetical protein BB0539
Length = 232
Score = 32.7 bits (73), Expect = 1.5
Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 13/217 (5%)
Frame = +2
Query: 140 LATAASAVAVFRNPTLFKYA---SRAGMASILLGFVGVIGSGIIMRSIPYDETSLLKHAA 310
L +A A A N T+ S + MA IL+ F V + I + + L
Sbjct: 30 LISAVFAYATSENQTIKAIIFSNSMSFMAMILIQFGLVYAISGALNKISSNTATAL---- 85
Query: 311 WLLHCGTLGFFVAPVCMLGGQVIQRAAVYTLGIVGG----LSAVAVTAPSDKFLYMGVPL 478
+LL+ G ++ + M+ Q + V+T GI G +S T +D MG L
Sbjct: 86 FLLYSALTGVTLSSIFMI---YTQGSIVFTFGITAGTFLGMSVYGYTTTTD-LTKMGSYL 141
Query: 479 AMGLGLVFATSIAGMFLNP------LSQLGAAALSFNXXXXXXXXXXXXXXDTQHVIKRA 640
MGL + S+ MF +S LG + D Q++ K
Sbjct: 142 IMGLWGIIIASLVNMFFRSSGLNFLISILGVVIFT-----------GLTAYDVQNISKMD 190
Query: 641 EEHPPGRTMPAYDPINNSMNIFLDTLNIFIRLVTIFG 751
+ + + S+ ++LD +N+F+ L+ G
Sbjct: 191 KMLQDDTEIKNRMAVVASLKLYLDFINLFLYLLRFLG 227
>sp|Q47142|HCAT_ECOLI Probable 3-phenylpropionic acid transporter
Length = 379
Score = 32.0 bits (71), Expect = 2.6
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
Frame = +2
Query: 137 NLATAASAVAVFRNPTLFKYASRAGMASILLGFVGVIGSGIIMRSIPYDETSLLKHAAWL 316
+L A + + LF+ S M ++ GV+ GI+ + +++ +
Sbjct: 244 SLGVVAEVIIFALSNKLFRRCSARDML-LISAICGVVRWGIMGATTALPWLIVVQ----I 298
Query: 317 LHCGTLGFFVAPVCML----------GGQVIQRAAVYTLGIVGGLSAVAVTAPSDKFLYM 466
LHCGT VC L G +VI+ AVY+ +GG A+ + Y+
Sbjct: 299 LHCGTF-----TVCHLAAMRYIAARQGSEVIRLQAVYSAVAMGGSIAIMTVFAGFLYQYL 353
Query: 467 GVPLAMGLGLVFATSIAGMFLNP 535
G + + LV ++ MFL P
Sbjct: 354 GHGVFWVMALV---ALPAMFLRP 373
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,857,529
Number of Sequences: 369166
Number of extensions: 2286880
Number of successful extensions: 5941
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5933
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 9856975370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)