Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_015_P19
(134 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9H3K2|GHITM_HUMAN Growth hormone inducible transmembran... 63 2e-10
sp|P74759|RGYR_SULSH Reverse gyrase [Includes: Helicase ; T... 31 0.77
sp|Q97ZF5|RGYR2_SULSO Reverse gyrase 2 [Includes: Helicase ... 30 2.2
>sp|Q9H3K2|GHITM_HUMAN Growth hormone inducible transmembrane protein (Dermal papilla
derived protein 2) (Transmembrane BAX inhibitor
motif-containing protein 5)
Length = 345
Score = 62.8 bits (151), Expect = 2e-10
Identities = 31/43 (72%), Positives = 35/43 (81%)
Frame = +3
Query: 6 RAAVYTLGIVGGLSAVAVTAPSDKFLYMGVPLAMGLGLVFATS 134
RAA YT GIVGGLS VA+ APS+KFL MG PL +GLGLVF +S
Sbjct: 217 RAAWYTAGIVGGLSTVAMCAPSEKFLNMGAPLGVGLGLVFVSS 259
>sp|P74759|RGYR_SULSH Reverse gyrase [Includes: Helicase ; Topoisomerase ]
Length = 1166
Score = 31.2 bits (69), Expect = 0.77
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 68 RCSDCNCTKSTNNSKCVYCGS 6
+C DCN T S + KC YCGS
Sbjct: 664 KCLDCNKTFSIASDKCPYCGS 684
>sp|Q97ZF5|RGYR2_SULSO Reverse gyrase 2 [Includes: Helicase ; Topoisomerase ]
Length = 1166
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 68 RCSDCNCTKSTNNSKCVYCGS 6
+C DCN S+ + KC YCGS
Sbjct: 664 KCLDCNKIFSSASDKCPYCGS 684
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,477,202
Number of Sequences: 369166
Number of extensions: 223010
Number of successful extensions: 1053
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 68,354,980
effective HSP length: 18
effective length of database: 65,029,750
effective search space used: 1690773500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)