DrC_01110
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01110 (404 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q5JHN1|RAD50_PYRKO DNA double-strand break repair rad50 ... 37 0.020 sp|Q92805|GOGA1_HUMAN Golgin subfamily A member 1 (Golgin-97) 35 0.044 sp|Q9U943|APLP_LOCMI Apolipophorins precursor [Contains: Ap... 34 0.097 sp|Q9CW79|GOGA1_MOUSE Golgin subfamily A member 1 (Golgin-97) 34 0.13 sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase M... 34 0.13 sp|Q58321|Y911_METJA Magnesium-chelatase subunit chlI homolog 34 0.13 sp|Q8K3V7|K1024_MOUSE UPF0258 protein KIAA1024 (DD1 protein) 33 0.17 sp|P37276|DYHC_DROME Dynein heavy chain, cytosolic (DYHC) 33 0.17 sp|O67009|ILVD_AQUAE Dihydroxy-acid dehydratase (DAD) 33 0.17 sp|P23746|ABRA_PLAFF 101 kDa malaria antigen (P101) (Acidic... 33 0.17
>sp|Q5JHN1|RAD50_PYRKO DNA double-strand break repair rad50 ATPase Length = 883 Score = 36.6 bits (83), Expect = 0.020 Identities = 27/84 (32%), Positives = 41/84 (48%) Frame = +1 Query: 55 KGDVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAKSLMND 234 KG++ K+ L E++L+E+ + S L E K F VKEL +L+EL+ K + Sbjct: 552 KGELLKKKLALV--EKKLRELEEERASLLGELKKLGFGDVKELEERLKELEPAYKRYIEL 609 Query: 235 ASKADELNNTNDELDKIVKSLIAL 306 DEL D L + L A+ Sbjct: 610 RPARDELKREEDLLKSLKLDLTAI 633
>sp|Q92805|GOGA1_HUMAN Golgin subfamily A member 1 (Golgin-97) Length = 767 Score = 35.4 bits (80), Expect = 0.044 Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%) Frame = +1 Query: 61 DVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVK-------ELLTKLRELDIKAK 219 ++ N + LF +E+ E+ G + +LS+ K+ + KK + EL + REL + Sbjct: 155 EMKNQSMNLFQRRDEMDELEGFQQQELSKIKHMLLKKEESLGKMEQELEARTRELSRTQE 214 Query: 220 SLMNDASKADELNNTNDELDKIVKSL 297 LMN + +L+ +EL + +L Sbjct: 215 ELMNSNQMSSDLSQKLEELQRHYSTL 240
>sp|Q9U943|APLP_LOCMI Apolipophorins precursor [Contains: Apolipophorin-2 (Apolipophorin II) (apoLp-2); Apolipophorin-1 (Apolipophorin I) (apoLp-1)] Length = 3380 Score = 34.3 bits (77), Expect = 0.097 Identities = 33/101 (32%), Positives = 47/101 (46%) Frame = +1 Query: 52 VKGDVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAKSLMN 231 +K ++AN KV SE KE++GD +S N + + LL L EL A+S+ Sbjct: 2508 LKEEIANDKVLKEISEN-WKEVIGDAAEVVSTLVNGILVTIDALLKTLNEL---AESV-- 2561 Query: 232 DASKADELNNTNDELDKIVKSLIALKNQYFPKEDVKELFGI 354 LD + KSL ALK+ Y K+ V + GI Sbjct: 2562 --------------LDALKKSLPALKDSY--KQAVDAIVGI 2586
Score = 29.3 bits (64), Expect = 3.1
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Frame = +1
Query: 43 NVNVKGDVA-NAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAK 219
++ VKG V + +LF S E+ +I K+S S V +K +++ L LD+K
Sbjct: 2227 DLTVKGYVQIGLENKLFDSNLEI-DIFKQKNQKISISSTVVEQKQNDVVKYLSTLDVK-- 2283
Query: 220 SLMNDASKADELNNTNDELDKIVKSLIALKNQYFPKED--VKELFGIQ 357
SK EL+ T + SLIAL++ K+D +KE Q
Sbjct: 2284 ------SKGHELDVTGRGEATVKPSLIALQSVLKYKKDKRIKEFKNFQ 2325
>sp|Q9CW79|GOGA1_MOUSE Golgin subfamily A member 1 (Golgin-97) Length = 758 Score = 33.9 bits (76), Expect = 0.13 Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 7/86 (8%) Frame = +1 Query: 61 DVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVK-------ELLTKLRELDIKAK 219 +V N + LF +E+ E+ G + ++S+ K+ + KK + EL + REL+ + Sbjct: 155 EVKNQSLSLFQKRDEIDELEGFQQQEISKVKHMLLKKEECLGKMEQELDARTRELNRTQE 214 Query: 220 SLMNDASKADELNNTNDELDKIVKSL 297 L+ + +LN +EL + +L Sbjct: 215 ELVTSNQLSSDLNERLEELQRHCSTL 240
>sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505 Length = 778 Score = 33.9 bits (76), Expect = 0.13 Identities = 26/103 (25%), Positives = 51/103 (49%) Frame = +1 Query: 94 SEEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAKSLMNDASKADELNNTNDE 273 S+EE+KE ++K K ESK AV ++ KE K + K ++++ + + + E Sbjct: 504 SKEEIKEETEEIKEKEIESKTAVKEETKEEEEKTK----KPVTILDFIKQIEVKERSKSE 559 Query: 274 LDKIVKSLIALKNQYFPKEDVKELFGIQPRTLSI*TLNNKNIK 402 DKI + + PK+ +K + ++ + ++ N NI+ Sbjct: 560 EDKIKQEI------KIPKKPIKIIVDVREKNMAKLLHNYANIE 596
>sp|Q58321|Y911_METJA Magnesium-chelatase subunit chlI homolog Length = 365 Score = 33.9 bits (76), Expect = 0.13 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 25/102 (24%) Frame = +1 Query: 112 EILGDVKSKL---------SESKNAVFKKVKELLTKLRELDIKAKSLMNDASKADEL--- 255 E L DVK ++ +E+ A +KK +E KLRE IKA+ L+N +D+L Sbjct: 207 EGLNDVKDRVEVIKRVEEFNENPEAFYKKFEEEQNKLRERIIKARELLNKVEISDDLLEF 266 Query: 256 ------------NNTNDELDKIVKSLIALKNQ-YFPKEDVKE 342 N + + + K+L A + Y +DVKE Sbjct: 267 ISKVCIELGIQTNRADITVVRTAKALAAYNGRTYVTIDDVKE 308
>sp|Q8K3V7|K1024_MOUSE UPF0258 protein KIAA1024 (DD1 protein) Length = 917 Score = 33.5 bits (75), Expect = 0.17 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 7/60 (11%) Frame = +1 Query: 55 KGDVANAKVELFFSEEELKEI-------LGDVKSKLSESKNAVFKKVKELLTKLRELDIK 213 KGD N + SEEELK +G+++ KL ES + V +++ ++L KL +LD K Sbjct: 576 KGDKCNRPENVHHSEEELKSSVCKLVLRIGEIERKL-ESLSGVREEISQVLGKLNKLDQK 634
>sp|P37276|DYHC_DROME Dynein heavy chain, cytosolic (DYHC) Length = 4639 Score = 33.5 bits (75), Expect = 0.17 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 18/120 (15%) Frame = +1 Query: 19 ICIVASFVNVNVKGDVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVKELLTKLR 198 IC +FVN V ++ L ++L + + E ++ + K E +LR Sbjct: 3678 ICSRVTFVNFTVTRSSLQSQC--------LNQVLKAERPDIDEKRSDLLKLQGEFRLRLR 3729 Query: 199 ELDIKAKSLMNDAS------------------KADELNNTNDELDKIVKSLIALKNQYFP 324 +L+ +NDA +A ++N DE DK++ + + QY P Sbjct: 3730 QLEKSLLQALNDAKGKILDDDSVITTLETLKKEAYDINQKVDETDKVIAEIETVSQQYLP 3789
>sp|O67009|ILVD_AQUAE Dihydroxy-acid dehydratase (DAD) Length = 555 Score = 33.5 bits (75), Expect = 0.17 Identities = 15/43 (34%), Positives = 26/43 (60%) Frame = +1 Query: 61 DVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVKELLT 189 D+ N ++EL SEEE E + + K K E K++ ++ +L+T Sbjct: 503 DIPNRRIELLISEEEFNERMKNFKPKQKEIKSSWLRRYAKLVT 545
>sp|P23746|ABRA_PLAFF 101 kDa malaria antigen (P101) (Acidic basic repeat antigen) Length = 321 Score = 33.5 bits (75), Expect = 0.17 Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 11/80 (13%) Frame = +1 Query: 106 LKEILGDVKSKLSESKNAVFKKVKE----LLTK-LRELDIKAKSLMN------DASKADE 252 +K + VKS L + KN +F K KE + TK + E +KA+ + D++ + Sbjct: 35 IKLLFSKVKSLLKKLKNKIFPKKKEDNQAVDTKSMEEPKVKAQPALRGVEPTEDSNIMNS 94 Query: 253 LNNTNDELDKIVKSLIALKN 312 +NN DE+D K LI N Sbjct: 95 INNVMDEIDFFEKELIENNN 114
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.135 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,898,253
Number of Sequences: 369166
Number of extensions: 492461
Number of successful extensions: 2449
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2443
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
