Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_G11
(370 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5JHN1|RAD50_PYRKO DNA double-strand break repair rad50 ... 37 0.019
sp|Q92805|GOGA1_HUMAN Golgin subfamily A member 1 (Golgin-97) 35 0.041
sp|Q9U943|APLP_LOCMI Apolipophorins precursor [Contains: Ap... 34 0.092
sp|Q9CW79|GOGA1_MOUSE Golgin subfamily A member 1 (Golgin-97) 34 0.12
sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase M... 34 0.12
sp|Q58321|Y911_METJA Magnesium-chelatase subunit chlI homolog 34 0.12
sp|Q8K3V7|K1024_MOUSE UPF0258 protein KIAA1024 (DD1 protein) 33 0.16
sp|O67009|ILVD_AQUAE Dihydroxy-acid dehydratase (DAD) 33 0.16
sp|P23746|ABRA_PLAFF 101 kDa malaria antigen (P101) (Acidic... 33 0.16
sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic... 33 0.16
>sp|Q5JHN1|RAD50_PYRKO DNA double-strand break repair rad50 ATPase
Length = 883
Score = 36.6 bits (83), Expect = 0.019
Identities = 27/84 (32%), Positives = 41/84 (48%)
Frame = +3
Query: 21 KGDVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAKSLMND 200
KG++ K+ L E++L+E+ + S L E K F VKEL +L+EL+ K +
Sbjct: 552 KGELLKKKLALV--EKKLRELEEERASLLGELKKLGFGDVKELEERLKELEPAYKRYIEL 609
Query: 201 ASKADELNNTNDELDKIVKSLIAL 272
DEL D L + L A+
Sbjct: 610 RPARDELKREEDLLKSLKLDLTAI 633
>sp|Q92805|GOGA1_HUMAN Golgin subfamily A member 1 (Golgin-97)
Length = 767
Score = 35.4 bits (80), Expect = 0.041
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Frame = +3
Query: 27 DVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVK-------ELLTKLRELDIKAK 185
++ N + LF +E+ E+ G + +LS+ K+ + KK + EL + REL +
Sbjct: 155 EMKNQSMNLFQRRDEMDELEGFQQQELSKIKHMLLKKEESLGKMEQELEARTRELSRTQE 214
Query: 186 SLMNDASKADELNNTNDELDKIVKSL 263
LMN + +L+ +EL + +L
Sbjct: 215 ELMNSNQMSSDLSQKLEELQRHYSTL 240
>sp|Q9U943|APLP_LOCMI Apolipophorins precursor [Contains: Apolipophorin-2 (Apolipophorin
II) (apoLp-2); Apolipophorin-1 (Apolipophorin I)
(apoLp-1)]
Length = 3380
Score = 34.3 bits (77), Expect = 0.092
Identities = 33/101 (32%), Positives = 47/101 (46%)
Frame = +3
Query: 18 VKGDVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAKSLMN 197
+K ++AN KV SE KE++GD +S N + + LL L EL A+S+
Sbjct: 2508 LKEEIANDKVLKEISEN-WKEVIGDAAEVVSTLVNGILVTIDALLKTLNEL---AESV-- 2561
Query: 198 DASKADELNNTNDELDKIVKSLIALKNQYFPKEDVKELFGI 320
LD + KSL ALK+ Y K+ V + GI
Sbjct: 2562 --------------LDALKKSLPALKDSY--KQAVDAIVGI 2586
Score = 29.3 bits (64), Expect = 3.0
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Frame = +3
Query: 9 NVNVKGDVA-NAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAK 185
++ VKG V + +LF S E+ +I K+S S V +K +++ L LD+K
Sbjct: 2227 DLTVKGYVQIGLENKLFDSNLEI-DIFKQKNQKISISSTVVEQKQNDVVKYLSTLDVK-- 2283
Query: 186 SLMNDASKADELNNTNDELDKIVKSLIALKNQYFPKED--VKELFGIQ 323
SK EL+ T + SLIAL++ K+D +KE Q
Sbjct: 2284 ------SKGHELDVTGRGEATVKPSLIALQSVLKYKKDKRIKEFKNFQ 2325
>sp|Q9CW79|GOGA1_MOUSE Golgin subfamily A member 1 (Golgin-97)
Length = 758
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Frame = +3
Query: 27 DVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVK-------ELLTKLRELDIKAK 185
+V N + LF +E+ E+ G + ++S+ K+ + KK + EL + REL+ +
Sbjct: 155 EVKNQSLSLFQKRDEIDELEGFQQQEISKVKHMLLKKEECLGKMEQELDARTRELNRTQE 214
Query: 186 SLMNDASKADELNNTNDELDKIVKSL 263
L+ + +LN +EL + +L
Sbjct: 215 ELVTSNQLSSDLNERLEELQRHCSTL 240
>sp|Q58900|Y1505_METJA Putative ATP-dependent RNA helicase MJ1505
Length = 778
Score = 33.9 bits (76), Expect = 0.12
Identities = 26/103 (25%), Positives = 51/103 (49%)
Frame = +3
Query: 60 SEEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAKSLMNDASKADELNNTNDE 239
S+EE+KE ++K K ESK AV ++ KE K + K ++++ + + + E
Sbjct: 504 SKEEIKEETEEIKEKEIESKTAVKEETKEEEEKTK----KPVTILDFIKQIEVKERSKSE 559
Query: 240 LDKIVKSLIALKNQYFPKEDVKELFGIQPRTLSI*TLNNKNIK 368
DKI + + PK+ +K + ++ + ++ N NI+
Sbjct: 560 EDKIKQEI------KIPKKPIKIIVDVREKNMAKLLHNYANIE 596
>sp|Q58321|Y911_METJA Magnesium-chelatase subunit chlI homolog
Length = 365
Score = 33.9 bits (76), Expect = 0.12
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 25/102 (24%)
Frame = +3
Query: 78 EILGDVKSKL---------SESKNAVFKKVKELLTKLRELDIKAKSLMNDASKADEL--- 221
E L DVK ++ +E+ A +KK +E KLRE IKA+ L+N +D+L
Sbjct: 207 EGLNDVKDRVEVIKRVEEFNENPEAFYKKFEEEQNKLRERIIKARELLNKVEISDDLLEF 266
Query: 222 ------------NNTNDELDKIVKSLIALKNQ-YFPKEDVKE 308
N + + + K+L A + Y +DVKE
Sbjct: 267 ISKVCIELGIQTNRADITVVRTAKALAAYNGRTYVTIDDVKE 308
>sp|Q8K3V7|K1024_MOUSE UPF0258 protein KIAA1024 (DD1 protein)
Length = 917
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Frame = +3
Query: 21 KGDVANAKVELFFSEEELKEI-------LGDVKSKLSESKNAVFKKVKELLTKLRELDIK 179
KGD N + SEEELK +G+++ KL ES + V +++ ++L KL +LD K
Sbjct: 576 KGDKCNRPENVHHSEEELKSSVCKLVLRIGEIERKL-ESLSGVREEISQVLGKLNKLDQK 634
>sp|O67009|ILVD_AQUAE Dihydroxy-acid dehydratase (DAD)
Length = 555
Score = 33.5 bits (75), Expect = 0.16
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3
Query: 27 DVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVKELLT 155
D+ N ++EL SEEE E + + K K E K++ ++ +L+T
Sbjct: 503 DIPNRRIELLISEEEFNERMKNFKPKQKEIKSSWLRRYAKLVT 545
>sp|P23746|ABRA_PLAFF 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 321
Score = 33.5 bits (75), Expect = 0.16
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Frame = +3
Query: 72 LKEILGDVKSKLSESKNAVFKKVKE----LLTK-LRELDIKAKSLMN------DASKADE 218
+K + VKS L + KN +F K KE + TK + E +KA+ + D++ +
Sbjct: 35 IKLLFSKVKSLLKKLKNKIFPKKKEDNQAVDTKSMEEPKVKAQPALRGVEPTEDSNIMNS 94
Query: 219 LNNTNDELDKIVKSLIALKN 278
+NN DE+D K LI N
Sbjct: 95 INNVMDEIDFFEKELIENNN 114
>sp|P22620|ABRA_PLAFC 101 kDa malaria antigen (P101) (Acidic basic repeat antigen)
Length = 743
Score = 33.5 bits (75), Expect = 0.16
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Frame = +3
Query: 72 LKEILGDVKSKLSESKNAVFKKVKE----LLTK-LRELDIKAKSLMN------DASKADE 218
+K + VKS L + KN +F K KE + TK + E +KA+ + D++ +
Sbjct: 434 IKLLFSKVKSLLKKLKNKIFPKKKEDNQAVDTKSMEEPKVKAQPALRGVEPTEDSNIMNS 493
Query: 219 LNNTNDELDKIVKSLIALKN 278
+NN DE+D K LI N
Sbjct: 494 INNVMDEIDFFEKELIENNN 513
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,469,410
Number of Sequences: 369166
Number of extensions: 436467
Number of successful extensions: 2314
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2309
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)