Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_M08
(354 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5JHN1|RAD50_PYRKO DNA double-strand break repair rad50 ... 36 0.024
sp|O67009|ILVD_AQUAE Dihydroxy-acid dehydratase (DAD) 36 0.031
sp|Q8PUY4|RAD50_METMA DNA double-strand break repair rad50 ... 35 0.041
sp|P32908|SMC1_YEAST Structural maintenance of chromosome 1... 35 0.053
sp|Q58321|Y911_METJA Magnesium-chelatase subunit chlI homolog 35 0.053
sp|Q12039|HMI1_YEAST ATP-dependent DNA helicase HMI1, mitoc... 35 0.069
sp|P37276|DYHC_DROME Dynein heavy chain, cytosolic (DYHC) 35 0.069
sp|Q92805|GOGA1_HUMAN Golgin subfamily A member 1 (Golgin-97) 35 0.069
sp|Q9YHY6|XCAPD_XENLA Condensin complex subunit 1 (Chromoso... 34 0.090
sp|Q9CW79|GOGA1_MOUSE Golgin subfamily A member 1 (Golgin-97) 33 0.20
>sp|Q5JHN1|RAD50_PYRKO DNA double-strand break repair rad50 ATPase
Length = 883
Score = 36.2 bits (82), Expect = 0.024
Identities = 27/84 (32%), Positives = 41/84 (48%)
Frame = +2
Query: 5 KGDVANAKVELFFSEEELKEILGDFKSKLSENKNAVFKKVKELLTKLRELDIKAKSLMND 184
KG++ K+ L E++L+E+ + S L E K F VKEL +L+EL+ K +
Sbjct: 552 KGELLKKKLALV--EKKLRELEEERASLLGELKKLGFGDVKELEERLKELEPAYKRYIEL 609
Query: 185 ASKADELNNTNDELDKIVKSLIAL 256
DEL D L + L A+
Sbjct: 610 RPARDELKREEDLLKSLKLDLTAI 633
>sp|O67009|ILVD_AQUAE Dihydroxy-acid dehydratase (DAD)
Length = 555
Score = 35.8 bits (81), Expect = 0.031
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 11 DVANAKVELFFSEEELKEILGDFKSKLSENKNAVFKKVKELLT 139
D+ N ++EL SEEE E + +FK K E K++ ++ +L+T
Sbjct: 503 DIPNRRIELLISEEEFNERMKNFKPKQKEIKSSWLRRYAKLVT 545
>sp|Q8PUY4|RAD50_METMA DNA double-strand break repair rad50 ATPase
Length = 1070
Score = 35.4 bits (80), Expect = 0.041
Identities = 23/51 (45%), Positives = 29/51 (56%)
Frame = +2
Query: 5 KGDVANAKVELFFSEEELKEILGDFKSKLSENKNAVFKKVKELLTKLRELD 157
K +V L F+EE+L E L DF L ENKN + K KEL LRE++
Sbjct: 491 KSEVFAGLKALGFTEEQL-ENLEDFNELLLENKNRLHGKEKELEVTLREIE 540
>sp|P32908|SMC1_YEAST Structural maintenance of chromosome 1 (DA-box protein SMC1)
Length = 1225
Score = 35.0 bits (79), Expect = 0.053
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +2
Query: 11 DVANAKVELFFSEEELKEI---LGDFKSKLSENKNAVFKKVKELLTKLRELDIKAKSLMN 181
D+ NA+VE+ EE+ I +G +SKL E+KN + + K+ +TK EL+ L +
Sbjct: 852 DLENAQVEMKSLEEQEYAIEMKIGSIESKLEEHKNHLDELQKKFVTKQSELNSSEDILED 911
Query: 182 DASKADELNNTND----ELDKI-VKSLIALKN 262
S L D +++K ++ + ALKN
Sbjct: 912 MNSNLQVLKRERDGIKEDIEKFDLERVTALKN 943
>sp|Q58321|Y911_METJA Magnesium-chelatase subunit chlI homolog
Length = 365
Score = 35.0 bits (79), Expect = 0.053
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 16/85 (18%)
Frame = +2
Query: 86 KLSENKNAVFKKVKELLTKLRELDIKAKSLMNDASKADEL---------------NNTND 220
+ +EN A +KK +E KLRE IKA+ L+N +D+L N +
Sbjct: 224 EFNENPEAFYKKFEEEQNKLRERIIKARELLNKVEISDDLLEFISKVCIELGIQTNRADI 283
Query: 221 ELDKIVKSLIALKNQ-YFPKEDVKE 292
+ + K+L A + Y +DVKE
Sbjct: 284 TVVRTAKALAAYNGRTYVTIDDVKE 308
>sp|Q12039|HMI1_YEAST ATP-dependent DNA helicase HMI1, mitochondrial precursor
Length = 706
Score = 34.7 bits (78), Expect = 0.069
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Frame = +2
Query: 38 FFSEEELKEILGDFKSKLSENKNAVFKKVKELLTKLR-----ELDIKAKSLMN-DASKAD 199
F S +EL++++ D+K ++N N V +K+ EL+ + +L I+AK + D+S +D
Sbjct: 133 FRSYKELEKVVKDYKLNNAKNNNPVIEKLVELMDNCKVMTNDDLIIRAKKYLELDSSDSD 192
Query: 200 ELNNTNDELDKIVKSLIALKNQYFP 274
+ T D +K LI +P
Sbjct: 193 ASSFTQDLRNKYKVVLIDEFQDLYP 217
>sp|P37276|DYHC_DROME Dynein heavy chain, cytosolic (DYHC)
Length = 4639
Score = 34.7 bits (78), Expect = 0.069
Identities = 16/74 (21%), Positives = 39/74 (52%)
Frame = +2
Query: 53 ELKEILGDFKSKLSENKNAVFKKVKELLTKLRELDIKAKSLMNDASKADELNNTNDELDK 232
+L ++ G+F+ +L + + ++ + + + K+ + D +L +A ++N DE DK
Sbjct: 3716 DLLKLQGEFRLRLRQLEKSLLQALNDAKGKILDDDSVITTLETLKKEAYDINQKVDETDK 3775
Query: 233 IVKSLIALKNQYFP 274
++ + + QY P
Sbjct: 3776 VIAEIETVSQQYLP 3789
>sp|Q92805|GOGA1_HUMAN Golgin subfamily A member 1 (Golgin-97)
Length = 767
Score = 34.7 bits (78), Expect = 0.069
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Frame = +2
Query: 11 DVANAKVELFFSEEELKEILGDFKSKLSENKNAVFKKVK-------ELLTKLRELDIKAK 169
++ N + LF +E+ E+ G + +LS+ K+ + KK + EL + REL +
Sbjct: 155 EMKNQSMNLFQRRDEMDELEGFQQQELSKIKHMLLKKEESLGKMEQELEARTRELSRTQE 214
Query: 170 SLMNDASKADELNNTNDELDKIVKSL 247
LMN + +L+ +EL + +L
Sbjct: 215 ELMNSNQMSSDLSQKLEELQRHYSTL 240
>sp|Q9YHY6|XCAPD_XENLA Condensin complex subunit 1 (Chromosome-associated protein D2)
(Chromosome assembly protein XCAP-D2) (Chromosome
condensation-related SMC-associated protein 1) (Eg7)
Length = 1364
Score = 34.3 bits (77), Expect = 0.090
Identities = 16/52 (30%), Positives = 32/52 (61%)
Frame = +2
Query: 2 VKGDVANAKVELFFSEEELKEILGDFKSKLSENKNAVFKKVKELLTKLRELD 157
VKG V+ V L S++E+ + +F ++LS NAV+ + +++++L + D
Sbjct: 1103 VKGQVSEMAVLLIESDQEISALARNFFNELSNKGNAVYNLLPDIISRLSDPD 1154
>sp|Q9CW79|GOGA1_MOUSE Golgin subfamily A member 1 (Golgin-97)
Length = 758
Score = 33.1 bits (74), Expect = 0.20
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Frame = +2
Query: 11 DVANAKVELFFSEEELKEILGDFKSKLSENKNAVFKKVK-------ELLTKLRELDIKAK 169
+V N + LF +E+ E+ G + ++S+ K+ + KK + EL + REL+ +
Sbjct: 155 EVKNQSLSLFQKRDEIDELEGFQQQEISKVKHMLLKKEECLGKMEQELDARTRELNRTQE 214
Query: 170 SLMNDASKADELNNTNDELDKIVKSL 247
L+ + +LN +EL + +L
Sbjct: 215 ELVTSNQLSSDLNERLEELQRHCSTL 240
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,392,362
Number of Sequences: 369166
Number of extensions: 461526
Number of successful extensions: 2272
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2267
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)