Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_A12
(403 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5JHN1|RAD50_PYRKO DNA double-strand break repair rad50 ... 36 0.032
sp|Q9U943|APLP_LOCMI Apolipophorins precursor [Contains: Ap... 36 0.032
sp|Q92805|GOGA1_HUMAN Golgin subfamily A member 1 (Golgin-97) 35 0.042
sp|Q9CW79|GOGA1_MOUSE Golgin subfamily A member 1 (Golgin-97) 35 0.072
sp|P46675|STU2_YEAST Suppressor of tubulin STU2 34 0.094
sp|Q58321|Y911_METJA Magnesium-chelatase subunit chlI homolog 34 0.094
sp|Q861Q8|OPTN_MACMU Optineurin 34 0.12
sp|Q95KA2|OPTN_MACFA Optineurin 34 0.12
sp|Q8K3V7|K1024_MOUSE UPF0258 protein KIAA1024 (DD1 protein) 33 0.16
sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolo... 33 0.16
>sp|Q5JHN1|RAD50_PYRKO DNA double-strand break repair rad50 ATPase
Length = 883
Score = 35.8 bits (81), Expect = 0.032
Identities = 27/84 (32%), Positives = 41/84 (48%)
Frame = +1
Query: 55 KGDVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAKSLMND 234
KG++ K+ L E++L+E+ + S L E K F VKEL +L+EL+ K +
Sbjct: 552 KGELLKKKLALV--EKKLRELEEERASLLGELKKLGFGDVKELEERLKELEPAYKRYIEL 609
Query: 235 ASKADELNDTNDELDKIVKSLIAL 306
DEL D L + L A+
Sbjct: 610 RPARDELKREEDLLKSLKLDLTAI 633
>sp|Q9U943|APLP_LOCMI Apolipophorins precursor [Contains: Apolipophorin-2 (Apolipophorin
II) (apoLp-2); Apolipophorin-1 (Apolipophorin I)
(apoLp-1)]
Length = 3380
Score = 35.8 bits (81), Expect = 0.032
Identities = 34/102 (33%), Positives = 48/102 (47%)
Frame = +1
Query: 52 VKGDVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAKSLMN 231
+K ++AN KV SE KE++GD +S N + + LL L EL A+S+
Sbjct: 2508 LKEEIANDKVLKEISEN-WKEVIGDAAEVVSTLVNGILVTIDALLKTLNEL---AESV-- 2561
Query: 232 DASKADELNDTNDELDKIVKSLIALKNQYFPKEDVKELFGIA 357
LD + KSL ALK+ Y K+ V + GIA
Sbjct: 2562 --------------LDALKKSLPALKDSY--KQAVDAIVGIA 2587
Score = 28.5 bits (62), Expect = 5.2
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Frame = +1
Query: 43 NVNVKGDVA-NAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAK 219
++ VKG V + +LF S E+ +I K+S S V +K +++ L LD+K
Sbjct: 2227 DLTVKGYVQIGLENKLFDSNLEI-DIFKQKNQKISISSTVVEQKQNDVVKYLSTLDVK-- 2283
Query: 220 SLMNDASKADELNDTNDELDKIVKSLIALKNQYFPKED 333
SK EL+ T + SLIAL++ K+D
Sbjct: 2284 ------SKGHELDVTGRGEATVKPSLIALQSVLKYKKD 2315
>sp|Q92805|GOGA1_HUMAN Golgin subfamily A member 1 (Golgin-97)
Length = 767
Score = 35.4 bits (80), Expect = 0.042
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Frame = +1
Query: 61 DVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVK-------ELLTKLRELDIKAK 219
++ N + LF +E+ E+ G + +LS+ K+ + KK + EL + REL +
Sbjct: 155 EMKNQSMNLFQRRDEMDELEGFQQQELSKIKHMLLKKEESLGKMEQELEARTRELSRTQE 214
Query: 220 SLMNDASKADELNDTNDELDKIVKSL 297
LMN + +L+ +EL + +L
Sbjct: 215 ELMNSNQMSSDLSQKLEELQRHYSTL 240
>sp|Q9CW79|GOGA1_MOUSE Golgin subfamily A member 1 (Golgin-97)
Length = 758
Score = 34.7 bits (78), Expect = 0.072
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Frame = +1
Query: 61 DVANAKVELFFSEEELKEILGDVKSKLSESKNAVFKKVK-------ELLTKLRELDIKAK 219
+V N + LF +E+ E+ G + ++S+ K+ + KK + EL + REL+ +
Sbjct: 155 EVKNQSLSLFQKRDEIDELEGFQQQEISKVKHMLLKKEECLGKMEQELDARTRELNRTQE 214
Query: 220 SLMNDASKADELNDTNDELDKIVKSL 297
L+ + +LN+ +EL + +L
Sbjct: 215 ELVTSNQLSSDLNERLEELQRHCSTL 240
>sp|P46675|STU2_YEAST Suppressor of tubulin STU2
Length = 888
Score = 34.3 bits (77), Expect = 0.094
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Frame = +1
Query: 70 NAKVELFFSEEELKEILGDVKSKLSESKNAVFKK---VKELLTKLRELDIKAKSLMNDAS 240
N K+E+ E L+E L + +SKL+E + K V +L ++ L+ + +++ +
Sbjct: 694 NYKIEMIKENEMLREQLKEAQSKLNEKNIQLRSKEIDVNKLSDRVLSLENELRNMEIELD 753
Query: 241 KADELNDTNDELDKIVKSLIALKNQYFPKEDVKELFGIAPLT 366
+ + NDTN ++S+ + + P V +G+ L+
Sbjct: 754 RNKKRNDTN------LQSMGTISSYSIPSSTVSSNYGVKSLS 789
>sp|Q58321|Y911_METJA Magnesium-chelatase subunit chlI homolog
Length = 365
Score = 34.3 bits (77), Expect = 0.094
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 25/107 (23%)
Frame = +1
Query: 112 EILGDVKSKL---------SESKNAVFKKVKELLTKLRELDIKAKSLMNDASKADEL--- 255
E L DVK ++ +E+ A +KK +E KLRE IKA+ L+N +D+L
Sbjct: 207 EGLNDVKDRVEVIKRVEEFNENPEAFYKKFEEEQNKLRERIIKARELLNKVEISDDLLEF 266
Query: 256 ------------NDTNDELDKIVKSLIALKNQ-YFPKEDVKELFGIA 357
N + + + K+L A + Y +DVKE +A
Sbjct: 267 ISKVCIELGIQTNRADITVVRTAKALAAYNGRTYVTIDDVKEAMELA 313
>sp|Q861Q8|OPTN_MACMU Optineurin
Length = 571
Score = 33.9 bits (76), Expect = 0.12
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 15/106 (14%)
Frame = +1
Query: 97 EEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAKSLM--------NDASKADE 252
EE+ E +G L+ ++FK+++E TKL E ++ K L +++ E
Sbjct: 282 EEKGPETVGSEVEALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSE 341
Query: 253 LND------TNDELDKIVKSLIA-LKNQYFPKEDVKELFGIAPLTY 369
LN+ TN +L+ V+S+++ +K + ED K + LT+
Sbjct: 342 LNEKQELVYTNKKLELQVESMLSEIKMEQAKTEDEKSKLAMLQLTH 387
>sp|Q95KA2|OPTN_MACFA Optineurin
Length = 571
Score = 33.9 bits (76), Expect = 0.12
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 15/106 (14%)
Frame = +1
Query: 97 EEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAKSLM--------NDASKADE 252
EE+ E +G L+ ++FK+++E TKL E ++ K L +++ E
Sbjct: 282 EEKGPETVGSEVEALNLQVTSLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSE 341
Query: 253 LND------TNDELDKIVKSLIA-LKNQYFPKEDVKELFGIAPLTY 369
LN+ TN +L+ V+S+++ +K + ED K + LT+
Sbjct: 342 LNEKQELVYTNKKLELQVESMLSEIKMEQAKTEDEKSKLAMLQLTH 387
>sp|Q8K3V7|K1024_MOUSE UPF0258 protein KIAA1024 (DD1 protein)
Length = 917
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 7/60 (11%)
Frame = +1
Query: 55 KGDVANAKVELFFSEEELKEI-------LGDVKSKLSESKNAVFKKVKELLTKLRELDIK 213
KGD N + SEEELK +G+++ KL ES + V +++ ++L KL +LD K
Sbjct: 576 KGDKCNRPENVHHSEEELKSSVCKLVLRIGEIERKL-ESLSGVREEISQVLGKLNKLDQK 634
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156
Length = 903
Score = 33.5 bits (75), Expect = 0.16
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +1
Query: 94 SEEELKEILGDVKSKLSESKNAVFKKVKELLTKLRELDIKAKSLMNDASKADELND---- 261
++EELK D KL++ + K+KE++ + EL+ K +L S A+E+++
Sbjct: 761 NKEELKPSEKDEAQKLAKYLKDILGKLKEMIDNIYELENKLNTLKEQVS-AEEIDEIIKT 819
Query: 262 TNDELDKIVKSLIALKN 312
T + + + SL LKN
Sbjct: 820 TQNIIQRFTTSLDELKN 836
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,352,100
Number of Sequences: 369166
Number of extensions: 461394
Number of successful extensions: 2391
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2384
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1758783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)