Planarian EST Database

DrC_01104

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_01104 TCGGCACGAGGATCAAAATGAAACTATTTACTTTGTTCGGTCTAATTGTTTTATATTTCT TGTATACAGTTAGAGGGGAGGATTTACAATTCTTTGGCAAAGGAGTTGTCAAAGATGGTA AAGGCTCTGTAACGATATTTGGAAAAGAGTTTGATGCTTCGGTTAATGCCGACGTTGAAG TTTGTGCTGGTGAGATATGTGCAGCCTGCCACATTGATGGTCCTGATGGAGATCAACAAC CCTCATTTAGTTGTCAGCAATTGGCACCAAAATTAAAGTTGGAAAGAAGAAAATAAAAAC TTTCAATCAATAAATTTTTATTCAAC

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01104
         (326 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P00407|COX2_XENLA  Cytochrome c oxidase subunit 2 (Cytoch...    34   0.12 
sp|O47672|COX2_DUSTH  Cytochrome c oxidase subunit 2 (Cytoch...    33   0.26 
sp|Q96183|COX2_POLOR  Cytochrome c oxidase subunit 2 (Cytoch...    33   0.26 
sp|O47673|COX2_VULZE  Cytochrome c oxidase subunit 2 (Cytoch...    33   0.26 
sp|P98025|COX2_CHOBI  Cytochrome c oxidase subunit 2 (Cytoch...    33   0.26 
sp|O47681|COX2_VULVU  Cytochrome c oxidase subunit 2 (Cytoch...    32   0.34 
sp|O47680|COX2_VULMA  Cytochrome c oxidase subunit 2 (Cytoch...    32   0.34 
sp|Q7J6G2|COX2_PSEVE  Cytochrome c oxidase subunit 2 (Cytoch...    32   0.34 
sp|P67782|COX2_CANLU  Cytochrome c oxidase subunit 2 (Cytoch...    32   0.34 
sp|O47669|COX2_CANAU  Cytochrome c oxidase subunit 2 (Cytoch...    32   0.34

>sp|P00407|COX2_XENLA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 229

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +1

Query: 142 EKSLMLRLMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFY 321
           E  ++  +MP +  +++       L ++ E+N+PHL +        W  E  N++ ++F 
Sbjct: 60  EIEMVWTIMPAISLIMIALPSLRILYLMDEVNDPHLTIKAIGHQWYWSYEYTNYEDLSFD 119

Query: 322 S 324
           S
Sbjct: 120 S 120

>sp|O47672|COX2_DUSTH Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 163 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 324
           ++P +  VL+       L ++ EINNP L V        W  E  +++ +NF S
Sbjct: 67  ILPAIILVLIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120

>sp|Q96183|COX2_POLOR Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 230

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 142 EKSLMLRLMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFY 321
           E  ++  +MP L  + +       L ++ EIN+PHL +        W  E  ++ ++NF 
Sbjct: 60  EIEIVWTVMPALVLIAIALPSLRILYLMDEINDPHLTIKATGHQWYWSYEYTDYDTLNFD 119

Query: 322 S 324
           S
Sbjct: 120 S 120

>sp|O47673|COX2_VULZE Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 163 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 324
           ++P +  VL+       L ++ EINNP L V        W  E  +++ +NF S
Sbjct: 67  ILPAIILVLIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120

>sp|P98025|COX2_CHOBI Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +1

Query: 151 LMLRLMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 324
           L+  ++PT+  + +       L +L E+NNP + + +      W  E  +FQ+I F S
Sbjct: 63  LIWTILPTITLIFIALPSLRLLYLLDELNNPLITLKSIGHQWYWSYEYSDFQNIQFDS 120

>sp|O47681|COX2_VULVU Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 163 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 324
           ++P +  +L+       L ++ EINNP L V        W  E  +++ +NF S
Sbjct: 67  ILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120

>sp|O47680|COX2_VULMA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 163 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 324
           ++P +  +L+       L ++ EINNP L V        W  E  +++ +NF S
Sbjct: 67  ILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120

>sp|Q7J6G2|COX2_PSEVE Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 163 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 324
           ++P +  +L+       L ++ EINNP L V        W  E  +++ +NF S
Sbjct: 67  ILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120

>sp|P67782|COX2_CANLU Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
 sp|P67781|COX2_CANLA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
 sp|P67780|COX2_CANFA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 163 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 324
           ++P +  +L+       L ++ EINNP L V        W  E  +++ +NF S
Sbjct: 67  ILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120

>sp|O47669|COX2_CANAU Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
           II)
          Length = 227

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +1

Query: 163 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 324
           ++P +  +L+       L ++ EINNP L V        W  E  +++ +NF S
Sbjct: 67  ILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,439,795
Number of Sequences: 369166
Number of extensions: 561812
Number of successful extensions: 1708
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1706
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01104

Planaria EST Database

DrC_01104

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail