Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_L16
(185 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96RK0|CIC_HUMAN Protein capicua homolog 32 0.58
sp|P11977|PGK_EMENI Phosphoglycerate kinase 28 6.4
sp|Q9PJY2|PMPB_CHLMU Probable outer membrane protein pmpB p... 28 6.4
sp|Q9JW48|OXAA_NEIMA Inner membrane protein oxaA 28 8.4
>sp|Q96RK0|CIC_HUMAN Protein capicua homolog
Length = 1608
Score = 31.6 bits (70), Expect = 0.58
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 156 QLNEGC*SPSGPSMWQAAHISPAQTSTSALTEASNSFPNIVTEPLPSLTTP 4
QL C +P GP + SPA TS++ L + S + P++V S T P
Sbjct: 1079 QLPPACAAPGGPVITAFYSGSPAPTSSAPLAQPSQAPPSLVYTVATSTTPP 1129
>sp|P11977|PGK_EMENI Phosphoglycerate kinase
Length = 421
Score = 28.1 bits (61), Expect = 6.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 113 HIDGPDGDQQPSFSCQQLAPKLK 181
H+ PDG + P +S + + PKLK
Sbjct: 66 HLGRPDGKKNPKYSLKPVVPKLK 88
>sp|Q9PJY2|PMPB_CHLMU Probable outer membrane protein pmpB precursor (Polymorphic
membrane protein B)
Length = 1672
Score = 28.1 bits (61), Expect = 6.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 90 AQTSTSALTEASNSFPNIVTEPLPSLT 10
AQT+ S++T AS S PN P P +T
Sbjct: 385 AQTNKSSVTAASQSGPNTTPTPTPPVT 411
>sp|Q9JW48|OXAA_NEIMA Inner membrane protein oxaA
Length = 545
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 57 MLRLMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN 176
M+++MP L F ++ + PA L++ INN + WH N
Sbjct: 493 MMKIMP-LVFSVMFFFFPAGLVLYWVINNLLTIAQQWHIN 531
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,690,727
Number of Sequences: 369166
Number of extensions: 348105
Number of successful extensions: 1603
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 68,354,980
effective HSP length: 34
effective length of database: 62,073,990
effective search space used: 1675997730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)