Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_N24
(246 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00407|COX2_XENLA Cytochrome c oxidase subunit 2 (Cytoch... 34 0.12
sp|O47672|COX2_DUSTH Cytochrome c oxidase subunit 2 (Cytoch... 33 0.27
sp|Q96183|COX2_POLOR Cytochrome c oxidase subunit 2 (Cytoch... 33 0.27
sp|O47673|COX2_VULZE Cytochrome c oxidase subunit 2 (Cytoch... 33 0.27
sp|P98025|COX2_CHOBI Cytochrome c oxidase subunit 2 (Cytoch... 33 0.27
sp|O47681|COX2_VULVU Cytochrome c oxidase subunit 2 (Cytoch... 32 0.35
sp|O47680|COX2_VULMA Cytochrome c oxidase subunit 2 (Cytoch... 32 0.35
sp|Q7J6G2|COX2_PSEVE Cytochrome c oxidase subunit 2 (Cytoch... 32 0.35
sp|P67782|COX2_CANLU Cytochrome c oxidase subunit 2 (Cytoch... 32 0.35
sp|O47669|COX2_CANAU Cytochrome c oxidase subunit 2 (Cytoch... 32 0.35
>sp|P00407|COX2_XENLA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 229
Score = 33.9 bits (76), Expect = 0.12
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +2
Query: 62 EKSLMLRLMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFY 241
E ++ +MP + +++ L ++ E+N+PHL + W E N++ ++F
Sbjct: 60 EIEMVWTIMPAISLIMIALPSLRILYLMDEVNDPHLTIKAIGHQWYWSYEYTNYEDLSFD 119
Query: 242 S 244
S
Sbjct: 120 S 120
>sp|O47672|COX2_DUSTH Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 32.7 bits (73), Expect = 0.27
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 83 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 244
++P + VL+ L ++ EINNP L V W E +++ +NF S
Sbjct: 67 ILPAIILVLIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120
>sp|Q96183|COX2_POLOR Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 230
Score = 32.7 bits (73), Expect = 0.27
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +2
Query: 62 EKSLMLRLMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFY 241
E ++ +MP L + + L ++ EIN+PHL + W E ++ ++NF
Sbjct: 60 EIEIVWTVMPALVLIAIALPSLRILYLMDEINDPHLTIKATGHQWYWSYEYTDYDTLNFD 119
Query: 242 S 244
S
Sbjct: 120 S 120
>sp|O47673|COX2_VULZE Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 32.7 bits (73), Expect = 0.27
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 83 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 244
++P + VL+ L ++ EINNP L V W E +++ +NF S
Sbjct: 67 ILPAIILVLIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120
>sp|P98025|COX2_CHOBI Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 32.7 bits (73), Expect = 0.27
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 71 LMLRLMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 244
L+ ++PT+ + + L +L E+NNP + + + W E +FQ+I F S
Sbjct: 63 LIWTILPTITLIFIALPSLRLLYLLDELNNPLITLKSIGHQWYWSYEYSDFQNIQFDS 120
>sp|O47681|COX2_VULVU Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 32.3 bits (72), Expect = 0.35
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 83 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 244
++P + +L+ L ++ EINNP L V W E +++ +NF S
Sbjct: 67 ILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120
>sp|O47680|COX2_VULMA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 32.3 bits (72), Expect = 0.35
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 83 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 244
++P + +L+ L ++ EINNP L V W E +++ +NF S
Sbjct: 67 ILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120
>sp|Q7J6G2|COX2_PSEVE Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 32.3 bits (72), Expect = 0.35
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 83 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 244
++P + +L+ L ++ EINNP L V W E +++ +NF S
Sbjct: 67 ILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120
>sp|P67782|COX2_CANLU Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
sp|P67781|COX2_CANLA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
sp|P67780|COX2_CANFA Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 32.3 bits (72), Expect = 0.35
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 83 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 244
++P + +L+ L ++ EINNP L V W E +++ +NF S
Sbjct: 67 ILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120
>sp|O47669|COX2_CANAU Cytochrome c oxidase subunit 2 (Cytochrome c oxidase polypeptide
II)
Length = 227
Score = 32.3 bits (72), Expect = 0.35
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +2
Query: 83 LMPTLKFVLVRYVQPATLMVLMEINNPHLVVSNWHQN*SWKEENKNFQSINFYS 244
++P + +L+ L ++ EINNP L V W E +++ +NF S
Sbjct: 67 ILPAIILILIALPSLRILYMMDEINNPSLTVKTMGHQWYWSYEYTDYEDLNFDS 120
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,799,807
Number of Sequences: 369166
Number of extensions: 384941
Number of successful extensions: 1380
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 68,354,980
effective HSP length: 52
effective length of database: 58,748,760
effective search space used: 1703714040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)