Planaria EST Database

DrC_01095

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01095
         (1124 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Y6U3|ADSV_HUMAN  Adseverin (Scinderin)                        31   5.7  

>sp|Q9Y6U3|ADSV_HUMAN Adseverin (Scinderin)
          Length = 715

 Score = 31.2 bits (69), Expect = 5.7
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +3

Query: 84  KSNQYSTNRVHKQRKGKNYILMVENNIPLTRIVNTIGETLEL 209
           K+NQ +T   + +RKG++ +++VE     + ++  +GE  EL
Sbjct: 189 KANQVATGIRYNERKGRSELIVVEEGSEPSELIKVLGEKPEL 230

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,526,792
Number of Sequences: 369166
Number of extensions: 2373869
Number of successful extensions: 4793
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4792
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12488140920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01095

  1. Dr_sW_018_B22
  2. Dr_sW_002_L04
  3. Dr_sW_004_M04
  4. Dr_sW_027_K02
  5. Dr_sW_001_M16
  6. Dr_sW_024_F17
  7. Dr_sW_006_E17
  8. Dr_sW_011_L01
  9. Dr_sW_020_K10
  10. Dr_sW_011_J16
  11. Dr_sW_015_H22
  12. Dr_sW_019_A10
  13. Dr_sW_017_D17
  14. Dr_sW_009_B11
  15. Dr_sW_021_M22
  16. Dr_sW_023_F23
  17. Dr_sW_002_H19
  18. Dr_sW_004_M03
  19. Dr_sW_027_I01
  20. Dr_sW_026_L10
  21. Dr_sW_021_J19