Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_L01
(387 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P20060|HEXB_MOUSE Beta-hexosaminidase beta chain precurs... 29 2.9
sp|Q9STN3|SPT51_ARATH Putative transcription elongation fac... 29 2.9
sp|P49614|HEXB_FELCA Beta-hexosaminidase beta chain precurs... 29 2.9
sp|P34230|PXA2_YEAST Peroxisomal long-chain fatty acid impo... 28 6.5
sp|P29416|HEXA_MOUSE Beta-hexosaminidase alpha chain precur... 28 6.5
sp|P07686|HEXB_HUMAN Beta-hexosaminidase beta chain precurs... 28 6.5
sp|Q29548|HEXB_PIG Beta-hexosaminidase beta chain precursor... 28 6.5
>sp|P20060|HEXB_MOUSE Beta-hexosaminidase beta chain precursor
(N-acetyl-beta-glucosaminidase)
(Beta-N-acetylhexosaminidase) (Hexosaminidase B)
Length = 536
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 103 GLFIDQMHLNPDLWPRSSGT-LRLWA 177
G F+D +L P LWPR+S RLW+
Sbjct: 469 GEFVDATNLTPRLWPRASAVGERLWS 494
>sp|Q9STN3|SPT51_ARATH Putative transcription elongation factor SPT5 homolog 1
Length = 1054
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 278 DDNRFDLPGVTQNYPCKTPANQFLCPMR-TFVTPNAHNLRVPL 153
D +R+ + T +P +TP + ++ PMR + TP +R P+
Sbjct: 781 DTSRYSMGSETPMHPSRTPLHPYMTPMRDSGATPIHDGMRTPM 823
>sp|P49614|HEXB_FELCA Beta-hexosaminidase beta chain precursor
(N-acetyl-beta-glucosaminidase)
(Beta-N-acetylhexosaminidase) (Hexosaminidase B)
Length = 499
Score = 29.3 bits (64), Expect = 2.9
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 103 GLFIDQMHLNPDLWPRSSGT-LRLWA 177
G F+D +L P LWPR+S RLW+
Sbjct: 432 GEFVDATNLTPRLWPRASAVGERLWS 457
>sp|P34230|PXA2_YEAST Peroxisomal long-chain fatty acid import protein 1 (Peroxisomal ABC
transporter 2)
Length = 853
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 281 YDDNRFDLPGVTQNYPCKTPANQFLCPMRTFVTPNAHNLRV 159
YDD+R +N P TPANQ L P +F + ++L +
Sbjct: 467 YDDSRIKF----ENIPLITPANQVLVPELSFDLKHGNHLLI 503
>sp|P29416|HEXA_MOUSE Beta-hexosaminidase alpha chain precursor
(N-acetyl-beta-glucosaminidase)
(Beta-N-acetylhexosaminidase) (Hexosaminidase A)
Length = 528
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 103 GLFIDQMHLNPDLWPRSSGTL-RLWAFGVT 189
G ++D +L P LWPR+ RLW+ +T
Sbjct: 460 GEYVDSTNLVPRLWPRAGAVAERLWSSNLT 489
>sp|P07686|HEXB_HUMAN Beta-hexosaminidase beta chain precursor
(N-acetyl-beta-glucosaminidase)
(Beta-N-acetylhexosaminidase) (Hexosaminidase B)
(Cervical cancer proto-oncogene 7) (HCC-7) [Contains:
Beta-hexosaminidase beta-B chain; Beta-hexosaminidase
beta-A chain]
Length = 556
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 103 GLFIDQMHLNPDLWPRSSGT-LRLWA 177
G ++D +L P LWPR+S RLW+
Sbjct: 490 GEYVDATNLTPRLWPRASAVGERLWS 515
>sp|Q29548|HEXB_PIG Beta-hexosaminidase beta chain precursor
(N-acetyl-beta-glucosaminidase)
(Beta-N-acetylhexosaminidase) (Hexosaminidase B) (65 kDa
epididymal boar protein)
Length = 531
Score = 28.1 bits (61), Expect = 6.5
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 103 GLFIDQMHLNPDLWPRSSGT-LRLWA 177
G ++D +L P LWPR+S RLW+
Sbjct: 464 GEYVDATNLTPRLWPRASAVGERLWS 489
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,128,585
Number of Sequences: 369166
Number of extensions: 917109
Number of successful extensions: 1850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1850
length of database: 68,354,980
effective HSP length: 95
effective length of database: 50,805,155
effective search space used: 1676570115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)