Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_D17
(775 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Y6U3|ADSV_HUMAN Adseverin (Scinderin) 31 3.3
sp|Q8D2L8|SLYA_WIGBR Transcriptional regulator slyA 30 9.5
sp|P40851|AXL1_YEAST Putative protease AXL1 30 9.5
>sp|Q9Y6U3|ADSV_HUMAN Adseverin (Scinderin)
Length = 715
Score = 31.2 bits (69), Expect = 3.3
Identities = 13/42 (30%), Positives = 26/42 (61%)
Frame = +3
Query: 69 KSNQYSTNRVHKQRKGKNYILMVENNIPLTRIVNTIGETLEL 194
K+NQ +T + +RKG++ +++VE + ++ +GE EL
Sbjct: 189 KANQVATGIRYNERKGRSELIVVEEGSEPSELIKVLGEKPEL 230
>sp|Q8D2L8|SLYA_WIGBR Transcriptional regulator slyA
Length = 144
Score = 29.6 bits (65), Expect = 9.5
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 33 KVQEKGKVVKHTKSNQYSTNRVHKQRKGKNYILMVENNIPLTR--IVNTIGE 182
+++EKG + +HT SN R+ + + I V N I TR I+N I +
Sbjct: 69 QLEEKGLITRHTCSNDRRAKRIKLTKSAEPIIQKVNNVIHTTREEILNGINQ 120
>sp|P40851|AXL1_YEAST Putative protease AXL1
Length = 1208
Score = 29.6 bits (65), Expect = 9.5
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Frame = +3
Query: 12 EEEKNSFKVQEKGKVVKHTKSNQYSTNRVHKQRKGKNYILMVENNIPLTRIVNTIGETLE 191
+ KN + + K++ T +Y +Q N I + N +P+ R++ + +
Sbjct: 274 DSSKNDYSDLKTFKILNTTWEKKYKNTMCFQQFPECNSIFINSNKVPIMRLLFPVSDKNT 333
Query: 192 LIHFKDRRIKSHIL--LSGDDVP 254
D +I SH+ L GD+ P
Sbjct: 334 RFTKDDIKIYSHLWCELFGDESP 356
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,597,396
Number of Sequences: 369166
Number of extensions: 1780962
Number of successful extensions: 3530
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3530
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7212136400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)