Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_004_M03 (654 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P20060|HEXB_MOUSE Beta-hexosaminidase beta chain precurs... 29 9.4 sp|P49614|HEXB_FELCA Beta-hexosaminidase beta chain precurs... 29 9.4
>sp|P20060|HEXB_MOUSE Beta-hexosaminidase beta chain precursor (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) (Hexosaminidase B) Length = 536 Score = 29.3 bits (64), Expect = 9.4 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +2 Query: 371 GLFIDQMHLNPDLWPRSSGT-LRLWA 445 G F+D +L P LWPR+S RLW+ Sbjct: 469 GEFVDATNLTPRLWPRASAVGERLWS 494
>sp|P49614|HEXB_FELCA Beta-hexosaminidase beta chain precursor (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) (Hexosaminidase B) Length = 499 Score = 29.3 bits (64), Expect = 9.4 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +2 Query: 371 GLFIDQMHLNPDLWPRSSGT-LRLWA 445 G F+D +L P LWPR+S RLW+ Sbjct: 432 GEFVDATNLTPRLWPRASAVGERLWS 457
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,141,814 Number of Sequences: 369166 Number of extensions: 1459344 Number of successful extensions: 2647 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2587 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2647 length of database: 68,354,980 effective HSP length: 106 effective length of database: 48,773,070 effective search space used: 5413810770 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)