DrC_01072
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01072 (987 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9UNK9|ANGE1_HUMAN Angel homolog 1 35 0.33 sp|P79942|NOCT_XENLA Nocturnin (Rhythmic message 1) (RM1) 35 0.43 sp|Q58181|CBIL_METJA Probable cobalt-precorrin-2 C(20)-meth... 34 0.56 sp|Q7UZH8|SYD_PROMP Aspartyl-tRNA synthetase (Aspartate--tR... 34 0.73 sp|P31384|CCR4_YEAST Glucose-repressible alcohol dehydrogen... 32 2.1 sp|Q06190|2ACA_HUMAN Serine/threonine protein phosphatase 2... 32 2.8 sp|Q9QUK4|BIRB_MOUSE Baculoviral IAP repeat-containing prot... 32 3.6 sp|Q9H7T3|CJ095_HUMAN Hypothetical protein C10orf95 31 6.2 sp|O35710|NOCT_MOUSE Nocturnin (CCR4 protein homolog) 31 6.2 sp|Q9Z0S4|CLD13_MOUSE Claudin-13 31 6.2
>sp|Q9UNK9|ANGE1_HUMAN Angel homolog 1 Length = 670 Score = 35.0 bits (79), Expect = 0.33 Identities = 14/21 (66%), Positives = 16/21 (76%) Frame = +1 Query: 469 ILCGDFNSDPNSPVYQICRDG 531 ILCGD NS P+SP+Y RDG Sbjct: 429 ILCGDLNSVPDSPLYNFIRDG 449
>sp|P79942|NOCT_XENLA Nocturnin (Rhythmic message 1) (RM1) Length = 388 Score = 34.7 bits (78), Expect = 0.43 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%) Frame = +1 Query: 469 ILCGDFNSDPNSPVYQICRDGYPDERSIKKLQS--------LRKVRLGTSQDSSSLVDLI 624 I+CGDFN+DP VY+ + S KL S ++ T+ +S +D I Sbjct: 277 IICGDFNADPTEEVYKRFASSSLNLNSAYKLLSEDGESEPPYTTWKIRTTGESCHTLDYI 336 Query: 625 WHSFQHPL 648 W+S QH L Sbjct: 337 WYS-QHAL 343
>sp|Q58181|CBIL_METJA Probable cobalt-precorrin-2 C(20)-methyltransferase (S-adenosyl-L-methionine--cobalt-precorrin-2 methyltransferase) Length = 230 Score = 34.3 bits (77), Expect = 0.56 Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 34/131 (25%) Frame = +1 Query: 7 WKDTLERALKERGYISDIVIGD---------------------NISNIGVLTLYRSSRFI 123 W++ LE+ LKE G ++ I IGD I N G+ +++ S+ + Sbjct: 79 WENALEKVLKEDGEVAIITIGDPTLYSTFSYVWKLLKERGVEVEIVN-GISSIFASAAAL 137 Query: 124 KVDIDCNKLSKLCIELIPANNDLDE-------------TTLNSIKQYLDEPDSYIITVLK 264 + + KLCI +P DL++ LN + D YII ++K Sbjct: 138 NIPL-VEGDEKLCI--LPQGKDLEKYIDEFDTIIIMKTKNLNEKLSVIKNRDDYIIGLVK 194 Query: 265 DTQMKDERLLI 297 +DE+++I Sbjct: 195 RATFEDEKVVI 205
>sp|Q7UZH8|SYD_PROMP Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS) Length = 598 Score = 33.9 bits (76), Expect = 0.73 Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 2/106 (1%) Frame = +1 Query: 25 RALKERGYISDIVIGDNISNIGVLTLYRSSRFIKVDIDCNKLSKLCIELIPANNDLDETT 204 +A++ G I I I D ++I + + KV D I + ++L+ T Sbjct: 316 KAIQNGGAIKSITIKDGNTSISNVRIKPGGDIFKVAQDAGAGGLAFIRV--KGDELE--T 371 Query: 205 LNSIKQYLDEPDSYIITVLKDTQMKDERLLIVG--NTHLSSPSIDK 336 + +IK L++ +I T+LK T+ KD L+++G NT + + S+D+ Sbjct: 372 IGAIKNNLNK--DHISTILKITEAKDGDLILLGAGNTQIVNQSLDR 415
>sp|P31384|CCR4_YEAST Glucose-repressible alcohol dehydrogenase transcriptional effector (Cytoplasmic deadenylase) (Carbon catabolite repressor protein 4) Length = 837 Score = 32.3 bits (72), Expect = 2.1 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 5/106 (4%) Frame = +1 Query: 469 ILCGDFNSDPNSPVYQICRDGYPDERSIKKLQSLRKVRLGTSQDSSSLVDLIWHSFQH-- 642 ++CGDFNS NS VY++ G ++ Q G + + +L S + Sbjct: 709 LICGDFNSYINSAVYELINTG-----RVQIHQEGNGRDFGYMSEKNFSHNLALKSSYNCI 763 Query: 643 ---PLTDSCSSYVKVVSCEPGNDYIWMSEQGLHPSKVLMPCSSEYQ 771 P T+ S+ V+ DYIW S L +L EY+ Sbjct: 764 GELPFTNFTPSFTDVI------DYIWFSTHALRVRGLLGEVDPEYE 803
>sp|Q06190|2ACA_HUMAN Serine/threonine protein phosphatase 2A, 72/130 kDa regulatory subunit B (PP2A, subunit B, B''-PR72/PR130) (PP2A, subunit B, B72/B130 isoforms) (PP2A, subunit B, PR72/PR130 isoforms) (PP2A, subunit B, R3 isoform) Length = 1150 Score = 32.0 bits (71), Expect = 2.8 Identities = 18/73 (24%), Positives = 32/73 (43%) Frame = +1 Query: 469 ILCGDFNSDPNSPVYQICRDGYPDERSIKKLQSLRKVRLGTSQDSSSLVDLIWHSFQHPL 648 +LCG +N+D N+P + + R +E+ + SL + S DL+ + Sbjct: 160 LLCGHYNNDGNAPSFGLLRSSSVEEKPLSHRNSLDTNLTSMFLQNFSEEDLVTQILEKHK 219 Query: 649 TDSCSSYVKVVSC 687 D+ SS + C Sbjct: 220 IDNFSSGTDIKMC 232
>sp|Q9QUK4|BIRB_MOUSE Baculoviral IAP repeat-containing protein 1b (Neuronal apoptosis inhibitory protein 2) Length = 1447 Score = 31.6 bits (70), Expect = 3.6 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Frame = +1 Query: 16 TLERALKERGYISDIVIGDNISNIGVLTLYRS-SRFIKVDIDCNKLSKLCIELIPANNDL 192 TL + E GY + + DN+ N+ L + R I++ K C+ +P+ Sbjct: 1344 TLNHKITEEGYRNFFQVLDNLPNLKNLDISRHIPECIQIQAITVKALGQCVSRLPS---- 1399 Query: 193 DETTLNSIKQYLDEPDSYIITVLKDTQMKDERLLI 297 T L + LDE D +I +K+ + +RL + Sbjct: 1400 -LTRLGMLSWLLDEEDIKVINDVKERHPQSKRLTV 1433
>sp|Q9H7T3|CJ095_HUMAN Hypothetical protein C10orf95 Length = 257 Score = 30.8 bits (68), Expect = 6.2 Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Frame = -3 Query: 772 AGTRWNKASTP-CSGADLVPTSKCNHCRARSSQL*RRNCRNPSGGAGSCAILDRREMRSP 596 AG W+ P CS TS C AR++ C +PS A SC RR SP Sbjct: 169 AGAAWSARGAPLCS----YRTSCAGSCGARTAPTPAPTCASPSAAASSCC-RRRRACSSP 223 Query: 595 E-----RCLVSPFSGTAA 557 C P + TAA Sbjct: 224 TTAWSGACGAGPTAATAA 241
>sp|O35710|NOCT_MOUSE Nocturnin (CCR4 protein homolog) Length = 429 Score = 30.8 bits (68), Expect = 6.2 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Frame = +1 Query: 469 ILCGDFNSDPNSPVYQICRDGYPDERSIKKLQS--------LRKVRLGTSQDSSSLVDLI 624 I+CGDFN++P VY+ + S KL S ++ TS + +D I Sbjct: 318 IVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSPDGQSEPPYTTWKIRTSGECRHTLDYI 377 Query: 625 WHSFQHPLT 651 W+S +H L+ Sbjct: 378 WYS-RHALS 385
>sp|Q9Z0S4|CLD13_MOUSE Claudin-13 Length = 211 Score = 30.8 bits (68), Expect = 6.2 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -2 Query: 506 GEFGSLLKSPQRIQQGLTKCCCWSGVLLLLMRSALICVII 387 G F LL +++Q G + W+ LLLL+ L+CV I Sbjct: 145 GFFNPLLGFSKKVQMGSSLSLAWTSSLLLLLGGILLCVNI 184
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,800,605
Number of Sequences: 369166
Number of extensions: 2061617
Number of successful extensions: 5476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5474
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10383318715
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
