Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_L12
(684 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UNK9|ANGE1_HUMAN Angel homolog 1 35 0.18
sp|P79942|NOCT_XENLA Nocturnin (Rhythmic message 1) (RM1) 35 0.24
sp|P31384|CCR4_YEAST Glucose-repressible alcohol dehydrogen... 32 1.2
sp|Q06190|2ACA_HUMAN Serine/threonine protein phosphatase 2... 32 1.6
sp|Q9H7T3|CJ095_HUMAN Hypothetical protein C10orf95 31 3.5
sp|O35710|NOCT_MOUSE Nocturnin (CCR4 protein homolog) 31 3.5
sp|Q9Z0S4|CLD13_MOUSE Claudin-13 31 3.5
sp|Q05916|HME1_CHICK Homeobox protein engrailed-1 (Gg-En-1) 31 3.5
sp|Q9UK39|NOCT_HUMAN Nocturnin (CCR4 protein homolog) 30 4.5
sp|P43681|ACHA4_HUMAN Neuronal acetylcholine receptor prote... 30 7.7
>sp|Q9UNK9|ANGE1_HUMAN Angel homolog 1
Length = 670
Score = 35.0 bits (79), Expect = 0.18
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +2
Query: 167 ILCGDFNSDPNSPVYQICRDG 229
ILCGD NS P+SP+Y RDG
Sbjct: 429 ILCGDLNSVPDSPLYNFIRDG 449
>sp|P79942|NOCT_XENLA Nocturnin (Rhythmic message 1) (RM1)
Length = 388
Score = 34.7 bits (78), Expect = 0.24
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Frame = +2
Query: 167 ILCGDFNSDPNSPVYQICRDGYPDERSIKKLQS--------LRKVRLGTSQDSSSLVDLI 322
I+CGDFN+DP VY+ + S KL S ++ T+ +S +D I
Sbjct: 277 IICGDFNADPTEEVYKRFASSSLNLNSAYKLLSEDGESEPPYTTWKIRTTGESCHTLDYI 336
Query: 323 WHSFQHPL 346
W+S QH L
Sbjct: 337 WYS-QHAL 343
>sp|P31384|CCR4_YEAST Glucose-repressible alcohol dehydrogenase transcriptional effector
(Cytoplasmic deadenylase) (Carbon catabolite repressor
protein 4)
Length = 837
Score = 32.3 bits (72), Expect = 1.2
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Frame = +2
Query: 167 ILCGDFNSDPNSPVYQICRDGYPDERSIKKLQSLRKVRLGTSQDSSSLVDLIWHSFQH-- 340
++CGDFNS NS VY++ G ++ Q G + + +L S +
Sbjct: 709 LICGDFNSYINSAVYELINTG-----RVQIHQEGNGRDFGYMSEKNFSHNLALKSSYNCI 763
Query: 341 ---PLTDSCSSYVKVVSCEPGNDYIWMSEQGLHPSKVLMPCSSEYQ 469
P T+ S+ V+ DYIW S L +L EY+
Sbjct: 764 GELPFTNFTPSFTDVI------DYIWFSTHALRVRGLLGEVDPEYE 803
>sp|Q06190|2ACA_HUMAN Serine/threonine protein phosphatase 2A, 72/130 kDa regulatory
subunit B (PP2A, subunit B, B''-PR72/PR130) (PP2A,
subunit B, B72/B130 isoforms) (PP2A, subunit B,
PR72/PR130 isoforms) (PP2A, subunit B, R3 isoform)
Length = 1150
Score = 32.0 bits (71), Expect = 1.6
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +2
Query: 167 ILCGDFNSDPNSPVYQICRDGYPDERSIKKLQSLRKVRLGTSQDSSSLVDLIWHSFQHPL 346
+LCG +N+D N+P + + R +E+ + SL + S DL+ +
Sbjct: 160 LLCGHYNNDGNAPSFGLLRSSSVEEKPLSHRNSLDTNLTSMFLQNFSEEDLVTQILEKHK 219
Query: 347 TDSCSSYVKVVSC 385
D+ SS + C
Sbjct: 220 IDNFSSGTDIKMC 232
>sp|Q9H7T3|CJ095_HUMAN Hypothetical protein C10orf95
Length = 257
Score = 30.8 bits (68), Expect = 3.5
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Frame = -2
Query: 470 AGTRWNKASTP-CSGADLVPTSKCNHCRARSSQL*RRNCRNPSGGAGSCAILDRREMRSP 294
AG W+ P CS TS C AR++ C +PS A SC RR SP
Sbjct: 169 AGAAWSARGAPLCS----YRTSCAGSCGARTAPTPAPTCASPSAAASSCC-RRRRACSSP 223
Query: 293 E-----RCLVSPFSGTAA 255
C P + TAA
Sbjct: 224 TTAWSGACGAGPTAATAA 241
>sp|O35710|NOCT_MOUSE Nocturnin (CCR4 protein homolog)
Length = 429
Score = 30.8 bits (68), Expect = 3.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +2
Query: 167 ILCGDFNSDPNSPVYQICRDGYPDERSIKKLQS--------LRKVRLGTSQDSSSLVDLI 322
I+CGDFN++P VY+ + S KL S ++ TS + +D I
Sbjct: 318 IVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSPDGQSEPPYTTWKIRTSGECRHTLDYI 377
Query: 323 WHSFQHPLT 349
W+S +H L+
Sbjct: 378 WYS-RHALS 385
>sp|Q9Z0S4|CLD13_MOUSE Claudin-13
Length = 211
Score = 30.8 bits (68), Expect = 3.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 204 GEFGSLLKSPQRIQQGLTKCCCWSGVLLLLMRSALICVII 85
G F LL +++Q G + W+ LLLL+ L+CV I
Sbjct: 145 GFFNPLLGFSKKVQMGSSLSLAWTSSLLLLLGGILLCVNI 184
>sp|Q05916|HME1_CHICK Homeobox protein engrailed-1 (Gg-En-1)
Length = 333
Score = 30.8 bits (68), Expect = 3.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 131 PDQQQHFVSPCWILCGDFNSDPNSP 205
PD QQ V P W+ C ++ P+SP
Sbjct: 206 PDSQQPLVWPAWVYCTRYSDRPSSP 230
>sp|Q9UK39|NOCT_HUMAN Nocturnin (CCR4 protein homolog)
Length = 431
Score = 30.4 bits (67), Expect = 4.5
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = +2
Query: 167 ILCGDFNSDPNSPVYQICRDGYPDERSIKKLQS--------LRKVRLGTSQDSSSLVDLI 322
I+CGDFN++P VY+ + S KL S ++ TS + +D I
Sbjct: 320 IVCGDFNAEPTEEVYKHFASSNLNLNSAYKLLSADGQSEPPYTTWKIRTSGECRHTLDYI 379
Query: 323 WHS 331
W+S
Sbjct: 380 WYS 382
>sp|P43681|ACHA4_HUMAN Neuronal acetylcholine receptor protein, alpha-4 subunit precursor
Length = 627
Score = 29.6 bits (65), Expect = 7.7
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 101 KADLINNNSTPDQQQHFVSPCWILCGDFNSDPNSPVYQICRDGYPD 238
K DL+N +S DQ + S W++ D N+ Y+ C + YPD
Sbjct: 188 KIDLVNMHSRVDQLDFWESGEWVIV-DAVGTYNTRKYECCAEIYPD 232
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,767,575
Number of Sequences: 369166
Number of extensions: 1490952
Number of successful extensions: 3938
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3937
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5830600200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)