Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_N23
(812 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UNK9|ANGE1_HUMAN Angel homolog 1 35 0.24
sp|P79942|NOCT_XENLA Nocturnin (Rhythmic message 1) (RM1) 35 0.32
sp|Q58181|CBIL_METJA Probable cobalt-precorrin-2 C(20)-meth... 34 0.42
sp|Q7UZH8|SYD_PROMP Aspartyl-tRNA synthetase (Aspartate--tR... 34 0.54
sp|Q06190|2ACA_HUMAN Serine/threonine protein phosphatase 2... 32 2.1
sp|Q9QUK4|BIRB_MOUSE Baculoviral IAP repeat-containing prot... 32 2.7
sp|O35710|NOCT_MOUSE Nocturnin (CCR4 protein homolog) 31 4.6
sp|Q9Z0S4|CLD13_MOUSE Claudin-13 31 4.6
sp|Q05916|HME1_CHICK Homeobox protein engrailed-1 (Gg-En-1) 31 4.6
sp|Q9UK39|NOCT_HUMAN Nocturnin (CCR4 protein homolog) 30 6.0
>sp|Q9UNK9|ANGE1_HUMAN Angel homolog 1
Length = 670
Score = 35.0 bits (79), Expect = 0.24
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = +1
Query: 469 ILCGDFNSDPNSPVYQICRDG 531
ILCGD NS P+SP+Y RDG
Sbjct: 429 ILCGDLNSVPDSPLYNFIRDG 449
>sp|P79942|NOCT_XENLA Nocturnin (Rhythmic message 1) (RM1)
Length = 388
Score = 34.7 bits (78), Expect = 0.32
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Frame = +1
Query: 469 ILCGDFNSDPNSPVYQICRDGYPDERSIKKLQS--------LRKVRLGTSQDSSSLVDLI 624
I+CGDFN+DP VY+ + S KL S ++ T+ +S +D I
Sbjct: 277 IICGDFNADPTEEVYKRFASSSLNLNSAYKLLSEDGESEPPYTTWKIRTTGESCHTLDYI 336
Query: 625 WHSFQHPL 648
W+S QH L
Sbjct: 337 WYS-QHAL 343
>sp|Q58181|CBIL_METJA Probable cobalt-precorrin-2 C(20)-methyltransferase
(S-adenosyl-L-methionine--cobalt-precorrin-2
methyltransferase)
Length = 230
Score = 34.3 bits (77), Expect = 0.42
Identities = 32/131 (24%), Positives = 55/131 (41%), Gaps = 34/131 (25%)
Frame = +1
Query: 7 WKDTLERALKERGYISDIVIGD---------------------NISNIGVLTLYRSSRFI 123
W++ LE+ LKE G ++ I IGD I N G+ +++ S+ +
Sbjct: 79 WENALEKVLKEDGEVAIITIGDPTLYSTFSYVWKLLKERGVEVEIVN-GISSIFASAAAL 137
Query: 124 KVDIDCNKLSKLCIELIPANNDLDE-------------TTLNSIKQYLDEPDSYIITVLK 264
+ + KLCI +P DL++ LN + D YII ++K
Sbjct: 138 NIPL-VEGDEKLCI--LPQGKDLEKYIDEFDTIIIMKTKNLNEKLSVIKNRDDYIIGLVK 194
Query: 265 DTQMKDERLLI 297
+DE+++I
Sbjct: 195 RATFEDEKVVI 205
>sp|Q7UZH8|SYD_PROMP Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 598
Score = 33.9 bits (76), Expect = 0.54
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +1
Query: 25 RALKERGYISDIVIGDNISNIGVLTLYRSSRFIKVDIDCNKLSKLCIELIPANNDLDETT 204
+A++ G I I I D ++I + + KV D I + ++L+ T
Sbjct: 316 KAIQNGGAIKSITIKDGNTSISNVRIKPGGDIFKVAQDAGAGGLAFIRV--KGDELE--T 371
Query: 205 LNSIKQYLDEPDSYIITVLKDTQMKDERLLIVG--NTHLSSPSIDK 336
+ +IK L++ +I T+LK T+ KD L+++G NT + + S+D+
Sbjct: 372 IGAIKNNLNK--DHISTILKITEAKDGDLILLGAGNTQIVNQSLDR 415
>sp|Q06190|2ACA_HUMAN Serine/threonine protein phosphatase 2A, 72/130 kDa regulatory
subunit B (PP2A, subunit B, B''-PR72/PR130) (PP2A,
subunit B, B72/B130 isoforms) (PP2A, subunit B,
PR72/PR130 isoforms) (PP2A, subunit B, R3 isoform)
Length = 1150
Score = 32.0 bits (71), Expect = 2.1
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +1
Query: 469 ILCGDFNSDPNSPVYQICRDGYPDERSIKKLQSLRKVRLGTSQDSSSLVDLIWHSFQHPL 648
+LCG +N+D N+P + + R +E+ + SL + S DL+ +
Sbjct: 160 LLCGHYNNDGNAPSFGLLRSSSVEEKPLSHRNSLDTNLTSMFLQNFSEEDLVTQILEKHK 219
Query: 649 TDSCSSYVKVVSC 687
D+ SS + C
Sbjct: 220 IDNFSSGTDIKMC 232
>sp|Q9QUK4|BIRB_MOUSE Baculoviral IAP repeat-containing protein 1b (Neuronal apoptosis
inhibitory protein 2)
Length = 1447
Score = 31.6 bits (70), Expect = 2.7
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Frame = +1
Query: 16 TLERALKERGYISDIVIGDNISNIGVLTLYRS-SRFIKVDIDCNKLSKLCIELIPANNDL 192
TL + E GY + + DN+ N+ L + R I++ K C+ +P+
Sbjct: 1344 TLNHKITEEGYRNFFQVLDNLPNLKNLDISRHIPECIQIQAITVKALGQCVSRLPS---- 1399
Query: 193 DETTLNSIKQYLDEPDSYIITVLKDTQMKDERLLI 297
T L + LDE D +I +K+ + +RL +
Sbjct: 1400 -LTRLGMLSWLLDEEDIKVINDVKERHPQSKRLTV 1433
>sp|O35710|NOCT_MOUSE Nocturnin (CCR4 protein homolog)
Length = 429
Score = 30.8 bits (68), Expect = 4.6
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Frame = +1
Query: 469 ILCGDFNSDPNSPVYQICRDGYPDERSIKKLQS--------LRKVRLGTSQDSSSLVDLI 624
I+CGDFN++P VY+ + S KL S ++ TS + +D I
Sbjct: 318 IVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSPDGQSEPPYTTWKIRTSGECRHTLDYI 377
Query: 625 WHSFQHPLT 651
W+S +H L+
Sbjct: 378 WYS-RHALS 385
>sp|Q9Z0S4|CLD13_MOUSE Claudin-13
Length = 211
Score = 30.8 bits (68), Expect = 4.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 506 GEFGSLLKSPQRIQQGLTKCCCWSGVLLLLMRSALICVII 387
G F LL +++Q G + W+ LLLL+ L+CV I
Sbjct: 145 GFFNPLLGFSKKVQMGSSLSLAWTSSLLLLLGGILLCVNI 184
>sp|Q05916|HME1_CHICK Homeobox protein engrailed-1 (Gg-En-1)
Length = 333
Score = 30.8 bits (68), Expect = 4.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 433 PDQQQHFVSPCWILCGDFNSDPNSP 507
PD QQ V P W+ C ++ P+SP
Sbjct: 206 PDSQQPLVWPAWVYCTRYSDRPSSP 230
>sp|Q9UK39|NOCT_HUMAN Nocturnin (CCR4 protein homolog)
Length = 431
Score = 30.4 bits (67), Expect = 6.0
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = +1
Query: 469 ILCGDFNSDPNSPVYQICRDGYPDERSIKKLQS--------LRKVRLGTSQDSSSLVDLI 624
I+CGDFN++P VY+ + S KL S ++ TS + +D I
Sbjct: 320 IVCGDFNAEPTEEVYKHFASSNLNLNSAYKLLSADGQSEPPYTTWKIRTSGECRHTLDYI 379
Query: 625 WHS 633
W+S
Sbjct: 380 WYS 382
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,559,919
Number of Sequences: 369166
Number of extensions: 1866563
Number of successful extensions: 5164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5163
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)