Planarian EST Database

DrC_01065

Cluster detail
GO Category :
Consensus Sequence :
>DrC_01065 CATGTTAAAGGTAGTGAATACGCTTTAAGATTTCCGCGTGGACGAGGAAGAGGACGTGGA CGTGGTCGAGGTCTTGGTCGTGGCCGAACTCATTCAACTTCCTATGAAAATGGTATTCGT ACCCATGAATACAGGCGAAAACCTGATTTTAAATCCAATTACACAAGTAATAAACCTAAA GAGGAAAACGAAGCTTATTCTGAAGCACCGGCTTCTCCGAAAGAAGTTTTGAAGACTGGA GTTCAGGGTAAGGTCAAGTGGTTCAATGTTAAACGGGGTTACGGATTTGTTTGTCGAAAT GATAATAATGAAGATATTTTTATTCATCATTCTGCGATCATTAAAGGCAATCCGGAACAT CCTCGAAAGTCTGTGGAAGATGGTGAAGATATTTTATTCGATGTTGTTAAAGGAATCAAA GGAGATGAAGCTGCTAATGTTTGTGGAATTGATGGTAGTTATGTCAAGGGAAGTGAATAT GCCTTACGATATCCTCGAGGACGGGGTAGAGGTAGATTTCGTGGGAGAGGAATGAAAGAT AAAAGCAGATCACGTGAAGTATCCGAAAATGAAGAAGTTCGTGGTATGGATTTTAATAGA GGTGGCCCAAATAATAGAAATTTCTTTGGTGGAAGGCCTCCAATGAGAAGAGGCGGTAGG CCTTTCGGACAAAGAAGACCATTAAGACCTGGACCTTTTTTTATGCCATATAGAAATCAA TATACTTATGACGTGCCTCCATACTTTTACGATTATTATCAAGAGCCAATGCGTGGACCA AGAGGAGGCTTCGATGGGCGAATACATAGAGGAGGTCCTTCTAGAGATGCGCCAATTAGA TTTGATGGCTATGACAATGACATGTTTAGTCGTAGACCTCCTAGAGGTAGAGGCCGACCA AGACCTCGAGGCAGGGGTCGAGGTCGTGGAGGACAAGAAAATAATTCAAAGTCCAATGAA AATGAAGCTGATGAAGAAAATGATAATCATTAAGTCAGAAGCTTGAATGTTGTGCGCATA TTAACAATGTTGGAGTTCTTTGGGGAAATATTATAGAATTTATCAATTTGCAAAAATATA ATGTTTCTTTAATT

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01065
         (1094 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41824|YBOXH_APLCA  Y-box factor homolog (APY1)                112   2e-24
sp|Q9JKB3|DBPA_MOUSE  DNA-binding protein A (Cold shock doma...   108   2e-23
sp|Q62764|DBPA_RAT  DNA-binding protein A (Cold shock domain...   108   2e-23
sp|P21574|YBX2A_XENLA  Y-box binding protein 2-A (Cytoplasmi...   107   5e-23
sp|P16989|DBPA_HUMAN  DNA-binding protein A (Cold shock doma...   107   6e-23
sp|P21573|YBOX1_XENLA  Nuclease sensitive element binding pr...   106   1e-22
sp|P62960|YBOX1_MOUSE  Nuclease sensitive element binding pr...   106   1e-22
sp|P67809|YBOX1_HUMAN  Nuclease sensitive element binding pr...   106   1e-22
sp|P45441|YBX2B_XENLA  Y-box binding protein 2-B (Cytoplasmi...   106   1e-22
sp|Q06066|YBOX1_CHICK  Nuclease sensitive element binding pr...   105   3e-22

>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
          Length = 253

 Score =  112 bits (280), Expect = 2e-24
 Identities = 56/106 (52%), Positives = 76/106 (71%), Gaps = 1/106 (0%)
 Frame = +1

Query: 169 NKP-KEENEAYSEAPASPKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIK 345
           N+P +E+NE   E     K+++ + V G VKWFNVK GYGF+ R+D  ED+F+H +AI+K
Sbjct: 13  NQPDQEQNEEQKE-----KKIIASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVK 67

Query: 346 GNPEHPRKSVEDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYA 483
            NP    +SV DGE + FDVV+G KG+EAANV G +GS V+GS+YA
Sbjct: 68  NNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSNVQGSKYA 113

>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
           3)
 sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
          Length = 361

 Score =  108 bits (271), Expect = 2e-23
 Identities = 57/99 (57%), Positives = 68/99 (68%), Gaps = 4/99 (4%)
 Frame = +1

Query: 199 SEAPA----SPKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPR 366
           S APA    + K+VL T V G VKWFNV+ GYGF+ RND  ED+F+H +AI K NP    
Sbjct: 65  SSAPAGGEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYL 124

Query: 367 KSVEDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYA 483
           +SV DGE + FDVV+G KG EAANV G DG  V+GS YA
Sbjct: 125 RSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163

>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
           protein YB2) (Y-box binding protein-A) (RYB-A)
          Length = 361

 Score =  108 bits (271), Expect = 2e-23
 Identities = 57/99 (57%), Positives = 68/99 (68%), Gaps = 4/99 (4%)
 Frame = +1

Query: 199 SEAPA----SPKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPR 366
           S APA    + K+VL T V G VKWFNV+ GYGF+ RND  ED+F+H +AI K NP    
Sbjct: 65  SSAPAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYL 124

Query: 367 KSVEDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYA 483
           +SV DGE + FDVV+G KG EAANV G DG  V+GS YA
Sbjct: 125 RSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYA 163

>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
           (mRNP4)
          Length = 336

 Score =  107 bits (268), Expect = 5e-23
 Identities = 57/110 (51%), Positives = 71/110 (64%), Gaps = 7/110 (6%)
 Frame = +1

Query: 175 PKEENEAYSEAPA-------SPKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHS 333
           P+ E+E   + P        + K+VL T VQG VKWFNV+ GYGF+ RND  ED+F+H +
Sbjct: 13  PQPESEPEIQKPGIAAARNQANKKVLATQVQGTVKWFNVRNGYGFINRNDTKEDVFVHQT 72

Query: 334 AIIKGNPEHPRKSVEDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYA 483
           AI K NP    +SV DGE + FDVV+G KG EAANV G  G  VKGS +A
Sbjct: 73  AIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRFA 122

>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
           DNA binding protein NF-GMB)
          Length = 372

 Score =  107 bits (267), Expect = 6e-23
 Identities = 53/88 (60%), Positives = 63/88 (71%)
 Frame = +1

Query: 220 KEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPRKSVEDGEDILF 399
           K+VL T V G VKWFNV+ GYGF+ RND  ED+F+H +AI K NP    +SV DGE + F
Sbjct: 84  KKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEF 143

Query: 400 DVVKGIKGDEAANVCGIDGSYVKGSEYA 483
           DVV+G KG EAANV G DG  V+GS YA
Sbjct: 144 DVVEGEKGAEAANVTGPDGVPVEGSRYA 171

>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 303

 Score =  106 bits (265), Expect = 1e-22
 Identities = 55/103 (53%), Positives = 68/103 (66%), Gaps = 6/103 (5%)
 Frame = +1

Query: 205 APASPKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPRKSVEDG 384
           A    K+V+ T V G VKWFNV+ GYGF+ RND  ED+F+H +AI K NP    +SV DG
Sbjct: 25  ATVGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDG 84

Query: 385 EDILFDVVKGIKGDEAANVCGIDGSYVKGSEYAL------RYP 495
           E + FDVV+G KG EAANV G +G  V+GS+YA       RYP
Sbjct: 85  ETVEFDVVEGEKGAEAANVTGPEGVPVQGSKYAADRNHYRRYP 127

>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 322

 Score =  106 bits (265), Expect = 1e-22
 Identities = 58/106 (54%), Positives = 70/106 (66%), Gaps = 7/106 (6%)
 Frame = +1

Query: 199 SEAPAS-PKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPRKSV 375
           S APA   K+V+ T V G VKWFNV+ GYGF+ RND  ED+F+H +AI K NP    +SV
Sbjct: 42  SAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSV 101

Query: 376 EDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYAL------RYP 495
            DGE + FDVV+G KG EAANV G  G  V+GS+YA       RYP
Sbjct: 102 GDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYP 147

>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 324

 Score =  106 bits (265), Expect = 1e-22
 Identities = 58/106 (54%), Positives = 70/106 (66%), Gaps = 7/106 (6%)
 Frame = +1

Query: 199 SEAPAS-PKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPRKSV 375
           S APA   K+V+ T V G VKWFNV+ GYGF+ RND  ED+F+H +AI K NP    +SV
Sbjct: 44  SAAPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSV 103

Query: 376 EDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYAL------RYP 495
            DGE + FDVV+G KG EAANV G  G  V+GS+YA       RYP
Sbjct: 104 GDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRRYP 149

>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
           (mRNP3)
          Length = 324

 Score =  106 bits (264), Expect = 1e-22
 Identities = 52/88 (59%), Positives = 64/88 (72%)
 Frame = +1

Query: 220 KEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFIHHSAIIKGNPEHPRKSVEDGEDILF 399
           K++L T VQG VKWFNV+ GYGF+ RND+ ED+F+H +AI K NP    +SV DGE + F
Sbjct: 35  KKLLATQVQGTVKWFNVRNGYGFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEF 94

Query: 400 DVVKGIKGDEAANVCGIDGSYVKGSEYA 483
           DVV+G KG EAANV G  G  VKGS +A
Sbjct: 95  DVVEGEKGAEAANVTGPGGVPVKGSRFA 122

>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 321

 Score =  105 bits (261), Expect = 3e-22
 Identities = 58/123 (47%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
 Frame = +1

Query: 145 DFKSNYTSNKPKEENEAYSEAPASPKEVLKTGVQGKVKWFNVKRGYGFVCRNDNNEDIFI 324
           D K N  S        + +      K+V+ T V G VKWFNV+ GYGF+ RND  ED+F+
Sbjct: 24  DSKPNGGSGNGSSGLASAAPPAGGDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFV 83

Query: 325 HHSAIIKGNPEHPRKSVEDGEDILFDVVKGIKGDEAANVCGIDGSYVKGSEYAL------ 486
           H +AI K NP    +SV DGE + FDVV+G KG EAANV G  G  V+GS+YA       
Sbjct: 84  HQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYR 143

Query: 487 RYP 495
           RYP
Sbjct: 144 RYP 146

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,065,480
Number of Sequences: 369166
Number of extensions: 1849563
Number of successful extensions: 5604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5569
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 12011494320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01065

Planaria EST Database

DrC_01065

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail