Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_F17
(259 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55202|ANPRB_ANGJA Atrial natriuretic peptide receptor B... 30 1.7
sp|Q7NDF7|RPOC2_GLOVI DNA-directed RNA polymerase beta' cha... 28 6.5
>sp|P55202|ANPRB_ANGJA Atrial natriuretic peptide receptor B precursor (ANP-B) (ANPRB)
(GC-B) (Guanylate cyclase) (NPR-B) (Atrial natriuretic
peptide B-type receptor)
Length = 1050
Score = 30.0 bits (66), Expect = 1.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 147 HFLHQLHFHWTLNYFLVLHDL 85
H+LH HF+WT F++ HDL
Sbjct: 162 HYLHS-HFNWTTRAFMLFHDL 181
>sp|Q7NDF7|RPOC2_GLOVI DNA-directed RNA polymerase beta' chain (RNAP beta' subunit)
(Transcriptase beta' chain) (RNA polymerase beta'
subunit)
Length = 1262
Score = 28.1 bits (61), Expect = 6.5
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 37 VDLLEVEADQDLEAGVEVVED 99
+ LLEVE Q +EAGV+VV+D
Sbjct: 643 ISLLEVEDGQYVEAGVQVVKD 663
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,504,143
Number of Sequences: 369166
Number of extensions: 234126
Number of successful extensions: 596
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)