Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_B20
(501 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55202|ANPRB_ANGJA Atrial natriuretic peptide receptor B... 30 3.2
sp|Q52B93|PACC_MAGGR pH-response transcription factor pacC/... 30 3.2
sp|P52826|CACP_COLLI Carnitine O-acetyltransferase precurso... 30 4.2
sp|P43234|CATO_HUMAN Cathepsin O precursor 29 7.1
sp|Q7VA20|IF2_PROMA Translation initiation factor IF-2 28 9.3
>sp|P55202|ANPRB_ANGJA Atrial natriuretic peptide receptor B precursor (ANP-B) (ANPRB)
(GC-B) (Guanylate cyclase) (NPR-B) (Atrial natriuretic
peptide B-type receptor)
Length = 1050
Score = 30.0 bits (66), Expect = 3.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 394 HFLHQLHFHWTLNYFLVLHDL 332
H+LH HF+WT F++ HDL
Sbjct: 162 HYLHS-HFNWTTRAFMLFHDL 181
>sp|Q52B93|PACC_MAGGR pH-response transcription factor pacC/RIM101
Length = 559
Score = 30.0 bits (66), Expect = 3.2
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +1
Query: 139 YDVPPYFYD---YYQEPMRGPRGGFDGRIHRGGPSRDAPIRFDGYD--NDMF 279
Y PP Y YYQ P GPRG G H G + D+ R GYD ND F
Sbjct: 201 YSHPPAPYGGGMYYQPPHMGPRGDIFG--HPGAGAYDS--RKRGYDDLNDFF 248
>sp|P52826|CACP_COLLI Carnitine O-acetyltransferase precursor (Carnitine acetylase) (CAT)
(Carnitine acetyltransferase) (CrAT)
Length = 627
Score = 29.6 bits (65), Expect = 4.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +2
Query: 158 FTIIIKSQCVDQEEASMGEYIEEVLLEMRQL 250
F I + C D A M Y+E+ LL+MR L
Sbjct: 588 FAISAFNSCADTNAARMAHYLEKALLDMRSL 618
>sp|P43234|CATO_HUMAN Cathepsin O precursor
Length = 321
Score = 28.9 bits (63), Expect = 7.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 127 NQYTYDVPPYFYDYY--QEPMRGPRGGFDGRIHRGGPSRDAPIRFDGYDNDM 276
NQ++Y P F Y +P + PR + +H P+ P+RFD D +
Sbjct: 70 NQFSYLFPEEFKAIYLRSKPSKFPR--YSAEVHMSIPNVSLPLRFDWRDKQV 119
>sp|Q7VA20|IF2_PROMA Translation initiation factor IF-2
Length = 1134
Score = 28.5 bits (62), Expect = 9.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 175 EPMRGPRGGFDGRIHRGGPSRDAPIRFDG 261
+P G RG DG +GGP++ PI G
Sbjct: 314 KPDNGGRGARDGNFRQGGPNQGPPISRQG 342
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,263,423
Number of Sequences: 369166
Number of extensions: 742352
Number of successful extensions: 2187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2187
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)