DrC_01041
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_01041 (1203 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P62916|TF2B_RAT Transcription initiation factor IIB (Gen... 309 9e-84 sp|P29052|TF2B_DROME Transcription initiation factor IIB (G... 309 9e-84 sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB (G... 308 2e-83 sp|P29054|TF2B_XENLA Transcription initiation factor IIB (G... 303 5e-82 sp|O16991|TF2B_CAEEL Transcription initiation factor IIB (G... 286 1e-76 sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB (G... 265 2e-70 sp|O13749|TF2B_SCHPO Transcription initiation factor IIB (G... 208 3e-53 sp|P48513|TF2B_SOYBN Transcription initiation factor IIB (G... 181 3e-45 sp|Q8W0W3|TF2B_ORYSA Transcription initiation factor IIB (G... 181 5e-45 sp|P48512|TF2B1_ARATH Transcription initiation factor IIB-1... 180 6e-45
>sp|P62916|TF2B_RAT Transcription initiation factor IIB (General transcription factor TFIIB) (RNA polymerase II alpha initiation factor) sp|P62915|TF2B_MOUSE Transcription initiation factor IIB (General transcription factor TFIIB) (RNA polymerase II alpha initiation factor) Length = 316 Score = 309 bits (792), Expect = 9e-84 Identities = 155/303 (51%), Positives = 217/303 (71%), Gaps = 1/303 (0%) Frame = +2 Query: 65 QVHCKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRVGEVE 244 +V C HP A L+ED++AGD++C +CGLVV +RVID SEWR+F+ND +KD SRVG+ + Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71 Query: 245 SSLKSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRINLP 424 + L S+ + S I + T DE GN Y++R T+SSSDRA+ A I M DRINLP Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131 Query: 425 KNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVSKKDI 604 +NI D +LFKQV+E K L+GR N+A+A++CL++ACR+ VPRTFKEICAVS +SKK+I Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191 Query: 605 GKIFKKIVHILSTSVGNATGEDFMARFCYQLGIPK-LEKIAKEISKKALDDNMVAGRSPV 781 G+ FK I+ L TSV T DFM+RFC L +PK ++ A I++KA++ ++V GRSP+ Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251 Query: 782 SIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNITPVVPLN 961 S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ Y+L+ P A LFPS+ P++ Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKFDTPVD 311 Query: 962 QLP 970 +LP Sbjct: 312 KLP 314
>sp|P29052|TF2B_DROME Transcription initiation factor IIB (General transcription factor TFIIB) Length = 315 Score = 309 bits (792), Expect = 9e-84 Identities = 157/307 (51%), Positives = 215/307 (70%), Gaps = 1/307 (0%) Frame = +2 Query: 53 MTSRQVHCKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRV 232 + + +V C HP + LIED++AGD++C++CGLVV +RVID SEWR+F+N+ D SRV Sbjct: 7 LDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 66 Query: 233 GEVESSLKSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDR 412 G E+ L S + S I T D G P Y++R T+SSSDR+L +A I +M DR Sbjct: 67 GGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADR 126 Query: 413 INLPKNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVS 592 INLPK I D A +LFKQVH+ K L+GR+N+A A++CL++ACR+ VPRTFKEICAVS +S Sbjct: 127 INLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKIS 186 Query: 593 KKDIGKIFKKIVHILSTSVGNATGEDFMARFCYQLGIPKL-EKIAKEISKKALDDNMVAG 769 KK+IG+ FK + L TSV T DFM RFC L +P + ++ A I+KKA++ ++V G Sbjct: 187 KKEIGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPG 246 Query: 770 RSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNITPV 949 RSP+S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ YKLM PHA KLFP + Sbjct: 247 RSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFT 306 Query: 950 VPLNQLP 970 P++QLP Sbjct: 307 TPIDQLP 313
>sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB (General transcription factor TFIIB) (S300-II) sp|Q5R886|TF2B_PONPY Transcription initiation factor IIB (General transcription factor TFIIB) Length = 316 Score = 308 bits (789), Expect = 2e-83 Identities = 154/303 (50%), Positives = 217/303 (71%), Gaps = 1/303 (0%) Frame = +2 Query: 65 QVHCKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRVGEVE 244 +V C HP A L+ED++AGD++C +CGLVV +RVID SEWR+F+ND +KD SRVG+ + Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71 Query: 245 SSLKSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRINLP 424 + L S+ + S I + T DE GN Y++R T+SSSDRA+ A I M DRINLP Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131 Query: 425 KNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVSKKDI 604 +NI D +LFKQV+E K L+GR N+A+A++CL++ACR+ VPRTFKEICAVS +SKK+I Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191 Query: 605 GKIFKKIVHILSTSVGNATGEDFMARFCYQLGIPK-LEKIAKEISKKALDDNMVAGRSPV 781 G+ FK I+ L TSV T DFM+RFC L +PK ++ A I++KA++ ++V GRSP+ Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251 Query: 782 SIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNITPVVPLN 961 S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ Y+L+ P A LFP++ P++ Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVD 311 Query: 962 QLP 970 +LP Sbjct: 312 KLP 314
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB (General transcription factor TFIIB) Length = 316 Score = 303 bits (777), Expect = 5e-82 Identities = 151/303 (49%), Positives = 217/303 (71%), Gaps = 1/303 (0%) Frame = +2 Query: 65 QVHCKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRVGEVE 244 +V C HP A L+ED++AGD++C++CGLVV +RVID SEWR+F+ND + D SRVG+ + Sbjct: 12 KVTCPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQ 71 Query: 245 SSLKSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRINLP 424 + L S + + I + T DE GN Y++R T+SSSDRA+ A I M DRINLP Sbjct: 72 NPLLSGGDLTTMIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLP 131 Query: 425 KNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVSKKDI 604 +NI D +LFKQV+E K L+GR+N+A+A++CL++ACR+ VPRTFKEICAVS +SKK+I Sbjct: 132 RNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191 Query: 605 GKIFKKIVHILSTSVGNATGEDFMARFCYQLGIPK-LEKIAKEISKKALDDNMVAGRSPV 781 G+ FK I+ L T+V T DFM+RFC LG+ K ++ A I++KA++ ++V GRSP+ Sbjct: 192 GRCFKLILKALETNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPI 251 Query: 782 SIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNITPVVPLN 961 S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ Y+L+ P A LFP++ P++ Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKFDTPVD 311 Query: 962 QLP 970 +LP Sbjct: 312 KLP 314
>sp|O16991|TF2B_CAEEL Transcription initiation factor IIB (General transcription factor TFIIB) Length = 306 Score = 286 bits (731), Expect = 1e-76 Identities = 153/306 (50%), Positives = 203/306 (66%), Gaps = 1/306 (0%) Frame = +2 Query: 59 SRQVHCKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRVGE 238 S V C HP LIEDH+AGDLVC CGLVV +R++D +EWRSF+N+ D SRVG Sbjct: 2 SAPVQCPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGA 61 Query: 239 VESSLKSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRIN 418 E+ L S + S TI + D + R +++++DR + A S IR M +RI+ Sbjct: 62 PENPLLSGGDLSTTI--AVGFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIH 119 Query: 419 LPKNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVSKK 598 LP+NI D A +FK V ESK LRG+NNEA A +CL++ACRK VPRTFKEICAVS VSKK Sbjct: 120 LPRNIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKK 179 Query: 599 DIGKIFKKIVHILSTSVGNATGEDFMARFCYQLGIP-KLEKIAKEISKKALDDNMVAGRS 775 +IG+ FK IV L T++ T DFM+RFC L +P ++ A I+K A+D ++VAGR+ Sbjct: 180 EIGRCFKIIVRSLETNLEQITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDLVAGRT 239 Query: 776 PVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNITPVVP 955 P+SIAAA+IYMAS A K+ K+IG+VAG AE T+ YKL+ P A +LFP + V P Sbjct: 240 PISIAAAAIYMASQASAEKRSAKEIGDVAGAAEITVRQTYKLLYPKALELFPKDFRFVTP 299 Query: 956 LNQLPS 973 ++ LP+ Sbjct: 300 IDALPN 305
>sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB (General transcription factor TFIIB) Length = 293 Score = 265 bits (677), Expect = 2e-70 Identities = 142/307 (46%), Positives = 195/307 (63%), Gaps = 1/307 (0%) Frame = +2 Query: 53 MTSRQVHCKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRV 232 + + +V C HP + LIED++AGD++C++CGLVV + Sbjct: 7 LENNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDAF---------------------- 44 Query: 233 GEVESSLKSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDR 412 G E+ L S S I T D G P Y +R T+ SSDR+L +A I +M DR Sbjct: 45 GGPENPLLSGGHLSTIIGPGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADR 104 Query: 413 INLPKNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVS 592 INLPK I D A +LFKQVH+ K L+GR+N+A A++CL++ACR+ VPRTFKEICAVS +S Sbjct: 105 INLPKTIVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKIS 164 Query: 593 KKDIGKIFKKIVHILSTSVGNATGEDFMARFCYQLGIPKL-EKIAKEISKKALDDNMVAG 769 KK+IG+ FK + L TSV T DFM RFC L +P + ++ A I+KKA++ ++V G Sbjct: 165 KKEIGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPG 224 Query: 770 RSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNITPV 949 RSP+S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ YKLM PHA KLFP + Sbjct: 225 RSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKFT 284 Query: 950 VPLNQLP 970 P++QLP Sbjct: 285 TPIDQLP 291
>sp|O13749|TF2B_SCHPO Transcription initiation factor IIB (General transcription factor TFIIB) Length = 340 Score = 208 bits (529), Expect = 3e-53 Identities = 120/304 (39%), Positives = 183/304 (60%), Gaps = 21/304 (6%) Frame = +2 Query: 74 CKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFAN-DTDSKDMSRVGEVESS 250 C+ P L+E+ +GD VC CGLV+ +R+ID SEWR+F+N D S D SRVG+V + Sbjct: 23 CREDPP-NLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVANP 81 Query: 251 LKSETETSITIQQSTNIRHLDESGNPLYKS--RSTLSSSDRALKTAHSNIRAMGDRINLP 424 L + + Q T I D +G L K+ RS ++ L TA+ I AM D I+LP Sbjct: 82 LLNGS------QLDTTISSYDGAGAMLAKAQGRSVQVRGEKNLLTAYKEIGAMCDAISLP 135 Query: 425 KNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVSKKDI 604 K I D A L+K+V + K L+G++++++ +C+++ACR+ KVPRTF EIC ++NV KK+I Sbjct: 136 KVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTNVPKKEI 195 Query: 605 GKIFKKIVHILSTS-----------------VGNATGEDFMARFCYQLGIP-KLEKIAKE 730 G+++K + +L+ + + ED M RFC +L +P ++ A E Sbjct: 196 GRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRLMLPMSVQSAAAE 255 Query: 731 ISKKALDDNMVAGRSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRP 910 ++++A +AGRSP+SIAA+ IYM S MG K K+I EV GV++ T+ + YKL+ Sbjct: 256 LARRAGLQGTLAGRSPISIAASGIYMISALMGYPKTPKEISEVTGVSDSTIRIAYKLL-- 313 Query: 911 HAEK 922 HAE+ Sbjct: 314 HAER 317
>sp|P48513|TF2B_SOYBN Transcription initiation factor IIB (General transcription factor TFIIB) Length = 313 Score = 181 bits (460), Expect = 3e-45 Identities = 112/287 (39%), Positives = 161/287 (56%), Gaps = 8/287 (2%) Frame = +2 Query: 98 LIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRVGEVESSLKSETETSI 277 ++ DH AGD VC++CGLV+ ID SEWR+FAN++ D +RVG + L ++ S Sbjct: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLST 74 Query: 278 TIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRINLPKNITDEAMSLF 457 I + + + L + ++ S+ DRAL A I M DR+ L I D A ++ Sbjct: 75 VIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRLGLVATIKDRANEIY 134 Query: 458 KQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSN-VSKKDIGKIFKKIVHI 634 K+V + K RGRN +A+ +CL++ACR+ PRT KEIC+V+N +KK+IG+ + IV Sbjct: 135 KRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 194 Query: 635 LSTSVGNAT------GEDFMARFCYQLGI-PKLEKIAKEISKKALDDNMVAGRSPVSIAA 793 L GNA DFM RFC L + + K A+E +K+ + RSP+SIAA Sbjct: 195 LGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKS--EEFDIRRSPISIAA 252 Query: 794 ASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPS 934 A IY+ + KK KDI GVAEGT+ YK + PH K+ P+ Sbjct: 253 AVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPN 299
>sp|Q8W0W3|TF2B_ORYSA Transcription initiation factor IIB (General transcription factor TFIIB) Length = 312 Score = 181 bits (458), Expect = 5e-45 Identities = 115/306 (37%), Positives = 168/306 (54%), Gaps = 8/306 (2%) Frame = +2 Query: 74 CKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRVGEVESSL 253 CK H DH AGD VCT+CGLV+ +D SEWR+FAN++ D RVG + L Sbjct: 9 CKKHTEVAF--DHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVGGPTNPL 66 Query: 254 KSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRINLPKNI 433 ++ S I + + + + L + ++ S+ DR+L A I M DR+ L I Sbjct: 67 LTDGGLSTVIAKPNGAQG-EFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLGLVATI 125 Query: 434 TDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSN-VSKKDIGK 610 D A ++K+V + K +RGRN +A+ +CL++ACR+ PRT KEIC+V+N +KK+IG+ Sbjct: 126 KDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGR 185 Query: 611 IFKKIVHIL------STSVGNATGEDFMARFCYQLGI-PKLEKIAKEISKKALDDNMVAG 769 + IV L S +G DF+ RFC LG+ + K A+E +++ + + Sbjct: 186 AKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRS--EELDIR 243 Query: 770 RSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNITPV 949 RSP+SIAAA IYM + KK KDI GVAEGT+ YK + P+A +L P+ Sbjct: 244 RSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKE 303 Query: 950 VPLNQL 967 L L Sbjct: 304 EDLKNL 309
>sp|P48512|TF2B1_ARATH Transcription initiation factor IIB-1 (General transcription factor TFIIB-1) (AtTFIIB1) Length = 312 Score = 180 bits (457), Expect = 6e-45 Identities = 110/287 (38%), Positives = 160/287 (55%), Gaps = 8/287 (2%) Frame = +2 Query: 98 LIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRVGEVESSLKSETETSI 277 L+ DH AGD +C++CGLV+ ID SEWR+FAN++ + D +RVG + L +++ + Sbjct: 15 LVVDHSAGDTLCSECGLVLESHSIDETSEWRTFANESSNSDPNRVGGPTNPLLADSALT- 73 Query: 278 TIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRINLPKNITDEAMSLF 457 T+ N D + L + ++ S+SDR L A I M +R+ L I D A L+ Sbjct: 74 TVIAKPNGSSGDFLSSSLGRWQNRNSNSDRGLIQAFKTIATMSERLGLVATIKDRANELY 133 Query: 458 KQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSN-VSKKDIGKIFKKIVHI 634 K++ + K RGRN +A+ +CL++ACR+ PRT KEIC ++N +KK+IG+ IV Sbjct: 134 KRLEDQKSSRGRNQDALYAACLYIACRQEDKPRTIKEICVIANGATKKEIGRAKDYIVKT 193 Query: 635 L------STSVGNATGEDFMARFCYQLGIPK-LEKIAKEISKKALDDNMVAGRSPVSIAA 793 L S +G DFM RFC L + K A+E +K+ + RSP+SIAA Sbjct: 194 LGLEPGQSVDLGTIHAGDFMRRFCSNLAMSNHAVKAAQEAVQKS--EEFDIRRSPISIAA 251 Query: 794 ASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPS 934 IY+ + KK KDI GVAEGT+ YK + PH K+ PS Sbjct: 252 VVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPS 298
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,700,561
Number of Sequences: 369166
Number of extensions: 2351568
Number of successful extensions: 7031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6895
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 13626738475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
