Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_N17
(458 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29052|TF2B_DROME Transcription initiation factor IIB (G... 80 2e-15
sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB (G... 80 2e-15
sp|O16991|TF2B_CAEEL Transcription initiation factor IIB (G... 74 2e-13
sp|P62916|TF2B_RAT Transcription initiation factor IIB (Gen... 71 1e-12
sp|P29054|TF2B_XENLA Transcription initiation factor IIB (G... 70 3e-12
sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB (G... 70 3e-12
sp|O13749|TF2B_SCHPO Transcription initiation factor IIB (G... 59 4e-09
sp|Q8W0W3|TF2B_ORYSA Transcription initiation factor IIB (G... 54 2e-07
sp|P48513|TF2B_SOYBN Transcription initiation factor IIB (G... 53 4e-07
sp|P48512|TF2B1_ARATH Transcription initiation factor IIB-1... 52 5e-07
>sp|P29052|TF2B_DROME Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 315
Score = 80.1 bits (196), Expect = 2e-15
Identities = 38/68 (55%), Positives = 51/68 (75%)
Frame = +1
Query: 22 GRSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNITP 201
GRSP+S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ YKLM PHA KLFP +
Sbjct: 246 GRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKF 305
Query: 202 VVPLNQLP 225
P++QLP
Sbjct: 306 TTPIDQLP 313
>sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 293
Score = 80.1 bits (196), Expect = 2e-15
Identities = 38/68 (55%), Positives = 51/68 (75%)
Frame = +1
Query: 22 GRSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNITP 201
GRSP+S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ YKLM PHA KLFP +
Sbjct: 224 GRSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKLFPEDFKF 283
Query: 202 VVPLNQLP 225
P++QLP
Sbjct: 284 TTPIDQLP 291
>sp|O16991|TF2B_CAEEL Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 306
Score = 73.6 bits (179), Expect = 2e-13
Identities = 37/70 (52%), Positives = 50/70 (71%)
Frame = +1
Query: 19 AGRSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNIT 198
AGR+P+SIAAA+IYMAS A K+ K+IG+VAG AE T+ YKL+ P A +LFP +
Sbjct: 236 AGRTPISIAAAAIYMASQASAEKRSAKEIGDVAGAAEITVRQTYKLLYPKALELFPKDFR 295
Query: 199 PVVPLNQLPS 228
V P++ LP+
Sbjct: 296 FVTPIDALPN 305
>sp|P62916|TF2B_RAT Transcription initiation factor IIB (General transcription factor
TFIIB) (RNA polymerase II alpha initiation factor)
sp|P62915|TF2B_MOUSE Transcription initiation factor IIB (General transcription factor
TFIIB) (RNA polymerase II alpha initiation factor)
Length = 316
Score = 70.9 bits (172), Expect = 1e-12
Identities = 34/68 (50%), Positives = 50/68 (73%)
Frame = +1
Query: 22 GRSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNITP 201
GRSP+S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ Y+L+ P A LFPS+
Sbjct: 247 GRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPSDFKF 306
Query: 202 VVPLNQLP 225
P+++LP
Sbjct: 307 DTPVDKLP 314
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 316
Score = 69.7 bits (169), Expect = 3e-12
Identities = 33/68 (48%), Positives = 50/68 (73%)
Frame = +1
Query: 22 GRSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNITP 201
GRSP+S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ Y+L+ P A LFP++
Sbjct: 247 GRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPADFKF 306
Query: 202 VVPLNQLP 225
P+++LP
Sbjct: 307 DTPVDKLP 314
>sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB (General transcription factor
TFIIB) (S300-II)
sp|Q5R886|TF2B_PONPY Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 316
Score = 69.7 bits (169), Expect = 3e-12
Identities = 33/68 (48%), Positives = 50/68 (73%)
Frame = +1
Query: 22 GRSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNITP 201
GRSP+S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ Y+L+ P A LFP++
Sbjct: 247 GRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKF 306
Query: 202 VVPLNQLP 225
P+++LP
Sbjct: 307 DTPVDKLP 314
>sp|O13749|TF2B_SCHPO Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 340
Score = 59.3 bits (142), Expect = 4e-09
Identities = 29/53 (54%), Positives = 38/53 (71%)
Frame = +1
Query: 19 AGRSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEK 177
AGRSP+SIAA+ IYM S MG K K+I EV GV++ T+ + YKL+ HAE+
Sbjct: 267 AGRSPISIAASGIYMISALMGYPKTPKEISEVTGVSDSTIRIAYKLL--HAER 317
>sp|Q8W0W3|TF2B_ORYSA Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 312
Score = 53.5 bits (127), Expect = 2e-07
Identities = 30/66 (45%), Positives = 37/66 (56%)
Frame = +1
Query: 25 RSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPSNITPV 204
RSP+SIAAA IYM + KK KDI GVAEGT+ YK + P+A +L P+
Sbjct: 244 RSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRLIPNTYAKE 303
Query: 205 VPLNQL 222
L L
Sbjct: 304 EDLKNL 309
>sp|P48513|TF2B_SOYBN Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 313
Score = 52.8 bits (125), Expect = 4e-07
Identities = 27/55 (49%), Positives = 34/55 (61%)
Frame = +1
Query: 25 RSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPS 189
RSP+SIAAA IY+ + KK KDI GVAEGT+ YK + PH K+ P+
Sbjct: 245 RSPISIAAAVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKIIPN 299
>sp|P48512|TF2B1_ARATH Transcription initiation factor IIB-1 (General transcription factor
TFIIB-1) (AtTFIIB1)
Length = 312
Score = 52.4 bits (124), Expect = 5e-07
Identities = 27/55 (49%), Positives = 33/55 (60%)
Frame = +1
Query: 25 RSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKLFPS 189
RSP+SIAA IY+ + KK KDI GVAEGT+ YK + PH K+ PS
Sbjct: 244 RSPISIAAVVIYIITQLSDDKKTLKDISHATGVAEGTIRNSYKDLYPHLSKIAPS 298
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,117,556
Number of Sequences: 369166
Number of extensions: 901798
Number of successful extensions: 2378
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2377
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2534533995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)