Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_E08
(926 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62916|TF2B_RAT Transcription initiation factor IIB (Gen... 297 2e-80
sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB (G... 297 2e-80
sp|P29052|TF2B_DROME Transcription initiation factor IIB (G... 296 7e-80
sp|P29054|TF2B_XENLA Transcription initiation factor IIB (G... 293 6e-79
sp|O16991|TF2B_CAEEL Transcription initiation factor IIB (G... 273 7e-73
sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB (G... 251 2e-66
sp|O13749|TF2B_SCHPO Transcription initiation factor IIB (G... 208 2e-53
sp|P48513|TF2B_SOYBN Transcription initiation factor IIB (G... 178 2e-44
sp|Q05959|TF2B_KLULA Transcription initiation factor IIB (G... 178 2e-44
sp|Q8W0W3|TF2B_ORYSA Transcription initiation factor IIB (G... 177 4e-44
>sp|P62916|TF2B_RAT Transcription initiation factor IIB (General transcription factor
TFIIB) (RNA polymerase II alpha initiation factor)
sp|P62915|TF2B_MOUSE Transcription initiation factor IIB (General transcription factor
TFIIB) (RNA polymerase II alpha initiation factor)
Length = 316
Score = 297 bits (761), Expect = 2e-80
Identities = 149/288 (51%), Positives = 207/288 (71%), Gaps = 1/288 (0%)
Frame = +2
Query: 65 QVHCKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRVGEVE 244
+V C HP A L+ED++AGD++C +CGLVV +RVID SEWR+F+ND +KD SRVG+ +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 245 SSLKSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRINLP 424
+ L S+ + S I + T DE GN Y++R T+SSSDRA+ A I M DRINLP
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 425 KNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVSKKDI 604
+NI D +LFKQV+E K L+GR N+A+A++CL++ACR+ VPRTFKEICAVS +SKK+I
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 605 GKIFKKIVHILSTSVGNATGEDFMARFCYQLGIPK-LEKIAKEISKKALDDNMVAGRSPV 781
G+ FK I+ L TSV T DFM+RFC L +PK ++ A I++KA++ ++V GRSP+
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 782 SIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKL 925
S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ Y+L+ P A L
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDL 299
>sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB (General transcription factor
TFIIB) (S300-II)
sp|Q5R886|TF2B_PONPY Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 316
Score = 297 bits (761), Expect = 2e-80
Identities = 149/288 (51%), Positives = 207/288 (71%), Gaps = 1/288 (0%)
Frame = +2
Query: 65 QVHCKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRVGEVE 244
+V C HP A L+ED++AGD++C +CGLVV +RVID SEWR+F+ND +KD SRVG+ +
Sbjct: 12 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFSNDKATKDPSRVGDSQ 71
Query: 245 SSLKSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRINLP 424
+ L S+ + S I + T DE GN Y++R T+SSSDRA+ A I M DRINLP
Sbjct: 72 NPLLSDGDLSTMIGKGTGAASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITTMADRINLP 131
Query: 425 KNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVSKKDI 604
+NI D +LFKQV+E K L+GR N+A+A++CL++ACR+ VPRTFKEICAVS +SKK+I
Sbjct: 132 RNIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 605 GKIFKKIVHILSTSVGNATGEDFMARFCYQLGIPK-LEKIAKEISKKALDDNMVAGRSPV 781
G+ FK I+ L TSV T DFM+RFC L +PK ++ A I++KA++ ++V GRSP+
Sbjct: 192 GRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 782 SIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKL 925
S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ Y+L+ P A L
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDL 299
>sp|P29052|TF2B_DROME Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 315
Score = 296 bits (757), Expect = 7e-80
Identities = 151/292 (51%), Positives = 206/292 (70%), Gaps = 1/292 (0%)
Frame = +2
Query: 53 MTSRQVHCKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRV 232
+ + +V C HP + LIED++AGD++C++CGLVV +RVID SEWR+F+N+ D SRV
Sbjct: 7 LDNNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPSRV 66
Query: 233 GEVESSLKSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDR 412
G E+ L S + S I T D G P Y++R T+SSSDR+L +A I +M DR
Sbjct: 67 GGPENPLLSGGDLSTIIGPGTGSASFDAFGAPKYQNRRTMSSSDRSLISAFKEISSMADR 126
Query: 413 INLPKNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVS 592
INLPK I D A +LFKQVH+ K L+GR+N+A A++CL++ACR+ VPRTFKEICAVS +S
Sbjct: 127 INLPKTIVDRANNLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKIS 186
Query: 593 KKDIGKIFKKIVHILSTSVGNATGEDFMARFCYQLGIPKL-EKIAKEISKKALDDNMVAG 769
KK+IG+ FK + L TSV T DFM RFC L +P + ++ A I+KKA++ ++V G
Sbjct: 187 KKEIGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPG 246
Query: 770 RSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKL 925
RSP+S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ YKLM PHA KL
Sbjct: 247 RSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKL 298
>sp|P29054|TF2B_XENLA Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 316
Score = 293 bits (749), Expect = 6e-79
Identities = 146/288 (50%), Positives = 207/288 (71%), Gaps = 1/288 (0%)
Frame = +2
Query: 65 QVHCKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRVGEVE 244
+V C HP A L+ED++AGD++C++CGLVV +RVID SEWR+F+ND + D SRVG+ +
Sbjct: 12 KVTCPNHPDALLVEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNDKAAADPSRVGDAQ 71
Query: 245 SSLKSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRINLP 424
+ L S + + I + T DE GN Y++R T+SSSDRA+ A I M DRINLP
Sbjct: 72 NPLLSGGDLTTMIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMMNAFKEITNMSDRINLP 131
Query: 425 KNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVSKKDI 604
+NI D +LFKQV+E K L+GR+N+A+A++CL++ACR+ VPRTFKEICAVS +SKK+I
Sbjct: 132 RNIIDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEICAVSRISKKEI 191
Query: 605 GKIFKKIVHILSTSVGNATGEDFMARFCYQLGIPK-LEKIAKEISKKALDDNMVAGRSPV 781
G+ FK I+ L T+V T DFM+RFC LG+ K ++ A I++KA++ ++V GRSP+
Sbjct: 192 GRCFKLILKALETNVDLITTGDFMSRFCSNLGLTKQVQMAATHIARKAVELDLVPGRSPI 251
Query: 782 SIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKL 925
S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ Y+L+ P A L
Sbjct: 252 SVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDL 299
>sp|O16991|TF2B_CAEEL Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 306
Score = 273 bits (697), Expect = 7e-73
Identities = 147/290 (50%), Positives = 193/290 (66%), Gaps = 1/290 (0%)
Frame = +2
Query: 59 SRQVHCKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRVGE 238
S V C HP LIEDH+AGDLVC CGLVV +R++D +EWRSF+N+ D SRVG
Sbjct: 2 SAPVQCPIHPDVHLIEDHRAGDLVCPACGLVVGDRLVDVGTEWRSFSNERSGNDPSRVGA 61
Query: 239 VESSLKSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRIN 418
E+ L S + S TI + D + R +++++DR + A S IR M +RI+
Sbjct: 62 PENPLLSGGDLSTTI--AVGFGGSDSDNSLANAQRKSMNNTDRQMTAAMSLIREMSERIH 119
Query: 419 LPKNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVSKK 598
LP+NI D A +FK V ESK LRG+NNEA A +CL++ACRK VPRTFKEICAVS VSKK
Sbjct: 120 LPRNIQDSASRIFKDVLESKALRGKNNEAQAAACLYIACRKDGVPRTFKEICAVSRVSKK 179
Query: 599 DIGKIFKKIVHILSTSVGNATGEDFMARFCYQLGIP-KLEKIAKEISKKALDDNMVAGRS 775
+IG+ FK IV L T++ T DFM+RFC L +P ++ A I+K A+D ++VAGR+
Sbjct: 180 EIGRCFKIIVRSLETNLEQITSADFMSRFCGNLSLPNSIQAAATRIAKCAVDMDLVAGRT 239
Query: 776 PVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKL 925
P+SIAAA+IYMAS A K+ K+IG+VAG AE T+ YKL+ P A +L
Sbjct: 240 PISIAAAAIYMASQASAEKRSAKEIGDVAGAAEITVRQTYKLLYPKALEL 289
>sp|Q9NHP7|TF2B_DROVI Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 293
Score = 251 bits (642), Expect = 2e-66
Identities = 136/292 (46%), Positives = 186/292 (63%), Gaps = 1/292 (0%)
Frame = +2
Query: 53 MTSRQVHCKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRV 232
+ + +V C HP + LIED++AGD++C++CGLVV +
Sbjct: 7 LENNKVCCYAHPESPLIEDYRAGDMICSECGLVVGDAF---------------------- 44
Query: 233 GEVESSLKSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDR 412
G E+ L S S I T D G P Y +R T+ SSDR+L +A I +M DR
Sbjct: 45 GGPENPLLSGGHLSTIIGPGTGSASFDAFGAPKYPNRRTMRSSDRSLISAFKEISSMADR 104
Query: 413 INLPKNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVS 592
INLPK I D A +LFKQVH+ K L+GR+N+A A++CL++ACR+ VPRTFKEICAVS +S
Sbjct: 105 INLPKTIVDRANTLFKQVHDGKNLKGRSNDAKASACLYIACRQEGVPRTFKEICAVSKIS 164
Query: 593 KKDIGKIFKKIVHILSTSVGNATGEDFMARFCYQLGIPKL-EKIAKEISKKALDDNMVAG 769
KK+IG+ FK + L TSV T DFM RFC L +P + ++ A I+KKA++ ++V G
Sbjct: 165 KKEIGRCFKLTLKALETSVDLITTADFMCRFCANLDLPNMVQRAATHIAKKAVEMDIVPG 224
Query: 770 RSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKL 925
RSP+S+AAA+IYMAS A K+ +K+IG++AGVA+ T+ YKLM PHA KL
Sbjct: 225 RSPISVAAAAIYMASQASEHKRSQKEIGDIAGVADVTIRQSYKLMYPHAAKL 276
>sp|O13749|TF2B_SCHPO Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 340
Score = 208 bits (529), Expect = 2e-53
Identities = 120/304 (39%), Positives = 183/304 (60%), Gaps = 21/304 (6%)
Frame = +2
Query: 74 CKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFAN-DTDSKDMSRVGEVESS 250
C+ P L+E+ +GD VC CGLV+ +R+ID SEWR+F+N D S D SRVG+V +
Sbjct: 23 CREDPP-NLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASGDPSRVGKVANP 81
Query: 251 LKSETETSITIQQSTNIRHLDESGNPLYKS--RSTLSSSDRALKTAHSNIRAMGDRINLP 424
L + + Q T I D +G L K+ RS ++ L TA+ I AM D I+LP
Sbjct: 82 LLNGS------QLDTTISSYDGAGAMLAKAQGRSVQVRGEKNLLTAYKEIGAMCDAISLP 135
Query: 425 KNITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVSKKDI 604
K I D A L+K+V + K L+G++++++ +C+++ACR+ KVPRTF EIC ++NV KK+I
Sbjct: 136 KVIADTAKQLYKRVDDHKALKGKSSQSIIAACIYIACRQGKVPRTFMEICTLTNVPKKEI 195
Query: 605 GKIFKKIVHILSTS-----------------VGNATGEDFMARFCYQLGIP-KLEKIAKE 730
G+++K + +L+ + + ED M RFC +L +P ++ A E
Sbjct: 196 GRVYKTLQRMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVRFCNRLMLPMSVQSAAAE 255
Query: 731 ISKKALDDNMVAGRSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRP 910
++++A +AGRSP+SIAA+ IYM S MG K K+I EV GV++ T+ + YKL+
Sbjct: 256 LARRAGLQGTLAGRSPISIAASGIYMISALMGYPKTPKEISEVTGVSDSTIRIAYKLL-- 313
Query: 911 HAEK 922
HAE+
Sbjct: 314 HAER 317
>sp|P48513|TF2B_SOYBN Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 313
Score = 178 bits (452), Expect = 2e-44
Identities = 111/284 (39%), Positives = 159/284 (55%), Gaps = 8/284 (2%)
Frame = +2
Query: 98 LIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRVGEVESSLKSETETSI 277
++ DH AGD VC++CGLV+ ID SEWR+FAN++ D +RVG + L ++ S
Sbjct: 15 VVFDHSAGDTVCSECGLVLESHSIDETSEWRTFANESGDNDPNRVGGPSNPLLTDGGLST 74
Query: 278 TIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRINLPKNITDEAMSLF 457
I + + + L + ++ S+ DRAL A I M DR+ L I D A ++
Sbjct: 75 VIAKPNGGGGGEFLSSSLGRWQNRGSNPDRALIQAFKTIATMSDRLGLVATIKDRANEIY 134
Query: 458 KQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSN-VSKKDIGKIFKKIVHI 634
K+V + K RGRN +A+ +CL++ACR+ PRT KEIC+V+N +KK+IG+ + IV
Sbjct: 135 KRVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQ 194
Query: 635 LSTSVGNAT------GEDFMARFCYQLGI-PKLEKIAKEISKKALDDNMVAGRSPVSIAA 793
L GNA DFM RFC L + + K A+E +K+ + RSP+SIAA
Sbjct: 195 LGLENGNAVEMGTIHAGDFMRRFCSNLCMNNQAVKAAQEAVQKS--EEFDIRRSPISIAA 252
Query: 794 ASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKL 925
A IY+ + KK KDI GVAEGT+ YK + PH K+
Sbjct: 253 AVIYIITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPHVSKI 296
>sp|Q05959|TF2B_KLULA Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 357
Score = 178 bits (451), Expect = 2e-44
Identities = 105/300 (35%), Positives = 165/300 (55%), Gaps = 16/300 (5%)
Frame = +2
Query: 74 CKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDS-KDMSRVGEVESS 250
CK +P ++E GD+VC CGLV+++R++D SEWR+F+ND + D SRVGE +
Sbjct: 31 CKVYPPK-VVERFSEGDIVCALCGLVLSDRIVDTRSEWRTFSNDDQNGDDPSRVGEASNP 89
Query: 251 LKSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRINLPKN 430
L + I Q+ +S+S + D L+ A++ I M D LPK
Sbjct: 90 LLDGNHLTTRIGQAQGSDARVTRDLNRAQSKSIVDKKDNELQAAYAKITMMCDAAELPKI 149
Query: 431 ITDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSNVSKKDIGK 610
+ D A +K E + L+G++ E++ S + + CR+ +V R+FKEI +++NV KK+IGK
Sbjct: 150 VKDCAKEAYKLCFEERVLKGKSQESIMASVILVGCRRAEVGRSFKEILSLTNVRKKEIGK 209
Query: 611 IFKKIVHIL--------------STSVGNATGEDFMARFCYQLGIP-KLEKIAKEISKKA 745
F I +IL + + G + E F+ RFC LG+ ++ A+ I+K +
Sbjct: 210 TFTIIKNILREKNDRGFANIDTSNITTGQTSAETFIPRFCSHLGLSVQVANAAEYIAKHS 269
Query: 746 LDDNMVAGRSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKL 925
D N++AGRSP++IAAA+IYMA+L + I + V EGT+ YK + H EK+
Sbjct: 270 KDVNVLAGRSPITIAAAAIYMATLLFKLNISPTRISQTLQVTEGTVKGGYKALYEHKEKV 329
>sp|Q8W0W3|TF2B_ORYSA Transcription initiation factor IIB (General transcription factor
TFIIB)
Length = 312
Score = 177 bits (449), Expect = 4e-44
Identities = 112/292 (38%), Positives = 164/292 (56%), Gaps = 8/292 (2%)
Frame = +2
Query: 74 CKYHPTATLIEDHKAGDLVCTKCGLVVAERVIDFESEWRSFANDTDSKDMSRVGEVESSL 253
CK H DH AGD VCT+CGLV+ +D SEWR+FAN++ D RVG + L
Sbjct: 9 CKKHTEVAF--DHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVGGPTNPL 66
Query: 254 KSETETSITIQQSTNIRHLDESGNPLYKSRSTLSSSDRALKTAHSNIRAMGDRINLPKNI 433
++ S I + + + + L + ++ S+ DR+L A I M DR+ L I
Sbjct: 67 LTDGGLSTVIAKPNGAQG-EFLSSSLGRWQNRGSNPDRSLILAFRTIANMADRLGLVATI 125
Query: 434 TDEAMSLFKQVHESKQLRGRNNEAVATSCLFMACRKLKVPRTFKEICAVSN-VSKKDIGK 610
D A ++K+V + K +RGRN +A+ +CL++ACR+ PRT KEIC+V+N +KK+IG+
Sbjct: 126 KDRANEIYKKVEDLKSIRGRNQDAILAACLYIACRQEDRPRTVKEICSVANGATKKEIGR 185
Query: 611 IFKKIVHIL------STSVGNATGEDFMARFCYQLGI-PKLEKIAKEISKKALDDNMVAG 769
+ IV L S +G DF+ RFC LG+ + K A+E +++ + +
Sbjct: 186 AKEFIVKQLEVEMGQSMEMGTIHAGDFLRRFCSTLGMNNQAVKAAQEAVQRS--EELDIR 243
Query: 770 RSPVSIAAASIYMASLAMGIKKDKKDIGEVAGVAEGTLNVVYKLMRPHAEKL 925
RSP+SIAAA IYM + KK KDI GVAEGT+ YK + P+A +L
Sbjct: 244 RSPISIAAAVIYMITQLSDDKKPLKDISLATGVAEGTIRNSYKDLYPYASRL 295
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,469,439
Number of Sequences: 369166
Number of extensions: 1704491
Number of successful extensions: 5560
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5426
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9510757740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)