Planaria EST Database

DrC_01040

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01040
         (738 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9P2R7|SUCB1_HUMAN  Succinyl-CoA ligase [ADP-forming] bet...   255   8e-68
sp|Q9Z2I9|SUCB1_MOUSE  Succinyl-CoA ligase [ADP-forming] bet...   253   3e-67
sp|O97580|SUCB1_PIG  Succinyl-CoA ligase [ADP-forming] beta-...   253   5e-67
sp|P53588|SUCB1_CAEEL  Probable succinyl-CoA ligase [ADP-for...   246   6e-65
sp|P53587|SUCB_NEOFR  Succinyl-CoA ligase [GDP-forming] beta...   202   6e-52
sp|O94415|SUCB_SCHPO  Probable succinyl-CoA ligase [GDP-form...   198   1e-50
sp|Q9P567|SUCB_NEUCR  Probable succinyl-CoA ligase [GDP-form...   194   3e-49
sp|O82662|SUCB_ARATH  Succinyl-CoA ligase [GDP-forming] beta...   193   5e-49
sp|Q87RE8|SUCC_VIBPA  Succinyl-CoA synthetase beta chain (SC...   183   5e-46
sp|Q8EFN8|SUCC_SHEON  Succinyl-CoA synthetase beta chain (SC...   182   8e-46

>sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
           precursor (Succinyl-CoA synthetase, betaA chain)
           (SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
           subunit)
          Length = 463

 Score =  255 bits (652), Expect = 8e-68
 Identities = 129/160 (80%), Positives = 146/160 (91%)
 Frame = +3

Query: 9   AAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFRL 188
           AA ANLNYIGLDG+IGCLVNGAGLAM TMDIIKLHGG PANFLDVGGGAT  QVTEAF+L
Sbjct: 304 AAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKL 363

Query: 189 ITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIANS 368
           ITSD KV AILVNIFGGIMRCDVIAQG+V A  +L IK+P+VVRLQGT+VDDAKA+IA+S
Sbjct: 364 ITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDAKALIADS 423

Query: 369 DMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 488
            +KILACD+LDEAA MVVKL++IV+LA++A VDVKF+LPI
Sbjct: 424 GLKILACDDLDEAARMVVKLSEIVTLAKQAHVDVKFQLPI 463

>sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
           precursor (Succinyl-CoA synthetase, betaA chain)
           (SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
           subunit)
          Length = 463

 Score =  253 bits (647), Expect = 3e-67
 Identities = 127/161 (78%), Positives = 147/161 (91%)
 Frame = +3

Query: 6   KAAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFR 185
           +AA A++NYIGLDGSIGCLVNGAGLAM TMDIIKLHGG PANFLDVGGGAT  QVTEAF+
Sbjct: 303 EAANADINYIGLDGSIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVQQVTEAFK 362

Query: 186 LITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIAN 365
           LITSD KV AILVNIFGGIMRCDVIAQG+V A  +L I++P+VVRLQGT+VDDAKA+IA+
Sbjct: 363 LITSDKKVQAILVNIFGGIMRCDVIAQGIVMAVKDLEIRIPVVVRLQGTRVDDAKALIAD 422

Query: 366 SDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 488
           S +KILACD+LDEAA MVVKL++IV+LA++A VDVKF+LPI
Sbjct: 423 SGLKILACDDLDEAAKMVVKLSEIVTLAKEAHVDVKFQLPI 463

>sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
           precursor (Succinyl-CoA synthetase, betaA chain)
           (SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
           subunit)
          Length = 425

 Score =  253 bits (645), Expect = 5e-67
 Identities = 127/160 (79%), Positives = 145/160 (90%)
 Frame = +3

Query: 9   AAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFRL 188
           AA ANLNYIGLDG+IGCLVNGAGLAM TMDIIKLHGG PANFLDVGGGAT  QVTEAF+L
Sbjct: 266 AAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKL 325

Query: 189 ITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIANS 368
           ITSD KV +ILVNIFGGIMRCDVIAQG+V A  +L IK+P+VVRLQGT+VDDAKA+IA+S
Sbjct: 326 ITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDAKALIADS 385

Query: 369 DMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 488
            +KILACD+LDEAA MVVKL++IV+L ++A VDVKF+LPI
Sbjct: 386 GLKILACDDLDEAAKMVVKLSEIVTLTKQAQVDVKFQLPI 425

>sp|P53588|SUCB1_CAEEL Probable succinyl-CoA ligase [ADP-forming] beta-chain,
           mitochondrial precursor (Succinyl-CoA synthetase, betaA
           chain) (SCS-betaA) (ATP-specific succinyl-CoA synthetase
           beta subunit)
          Length = 435

 Score =  246 bits (627), Expect = 6e-65
 Identities = 125/163 (76%), Positives = 144/163 (88%), Gaps = 1/163 (0%)
 Frame = +3

Query: 3   VKAAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAF 182
           ++AAAANLNYI LDG+IGC+VNGAGLAM TMDIIKLHGG PANFLDVGGGAT  QVTEAF
Sbjct: 273 IRAAAANLNYIRLDGTIGCMVNGAGLAMATMDIIKLHGGEPANFLDVGGGATVEQVTEAF 332

Query: 183 RLITSDP-KVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAII 359
           ++IT+D  KV AILVNIFGGIMRCDVIAQG++ AA EL++K+PIVVRLQGT+V+DAKA+I
Sbjct: 333 KIITADKDKVSAILVNIFGGIMRCDVIAQGIIQAARELDLKIPIVVRLQGTKVEDAKALI 392

Query: 360 ANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 488
           A S ++IL CDNLDEAA MVVKL++IV LAR   VDVKFEL I
Sbjct: 393 ATSQLRILPCDNLDEAAKMVVKLSNIVDLARATNVDVKFELSI 435

>sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] beta-chain, hydrogenosomal
           precursor (Succinyl-CoA synthetase, beta chain)
           (SCS-beta)
          Length = 437

 Score =  202 bits (515), Expect = 6e-52
 Identities = 96/153 (62%), Positives = 128/153 (83%)
 Frame = +3

Query: 21  NLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFRLITSD 200
           NLNY+G++G+IGCLVNGAGLAM TMDIIKL+GG PANFLDVGG ATA QV EAF++I+SD
Sbjct: 284 NLNYVGMEGNIGCLVNGAGLAMATMDIIKLNGGVPANFLDVGGSATAKQVKEAFKIISSD 343

Query: 201 PKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIANSDMKI 380
             V AILVNIFGGIMRCD++A+GV+ A  EL + +P+VVRLQGT+V++A+ +I NS++ +
Sbjct: 344 KAVSAILVNIFGGIMRCDIVAEGVIQAVKELGLDIPLVVRLQGTKVEEARELIKNSNLSL 403

Query: 381 LACDNLDEAAHMVVKLADIVSLARKAAVDVKFE 479
            A D+LD+AA  VV+LA++V LA++  + +K E
Sbjct: 404 YAIDDLDKAAKKVVQLANVVGLAKENGIKIKIE 436

>sp|O94415|SUCB_SCHPO Probable succinyl-CoA ligase [GDP-forming] beta-chain,
           mitochondrial precursor (Succinyl-CoA synthetase, beta
           chain) (SCS-beta)
          Length = 433

 Score =  198 bits (504), Expect = 1e-50
 Identities = 97/161 (60%), Positives = 123/161 (76%)
 Frame = +3

Query: 6   KAAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFR 185
           +AA   LN+I LDG+IGCLVNGAGLAM TMDIIKLHGG PANFLDVGG A A  + EAF 
Sbjct: 273 RAAKVGLNFIKLDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGNANAEAIREAFS 332

Query: 186 LITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIAN 365
           LIT+DPK  AI VNIFGGI+RCDVIA+G+++  + LN+ +PI+ RLQGT    AK +I N
Sbjct: 333 LITNDPKTTAIFVNIFGGIVRCDVIAKGLISVVSALNLNIPIICRLQGTNQGAAKEVINN 392

Query: 366 SDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 488
           S ++I + D+LDEAA    + + +V +AR+A V+V FELP+
Sbjct: 393 SGLRIFSFDDLDEAAKKACRFSRVVEMAREADVNVSFELPL 433

>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] beta-chain,
           mitochondrial precursor (Succinyl-CoA synthetase, beta
           chain) (SCS-beta)
          Length = 447

 Score =  194 bits (492), Expect = 3e-49
 Identities = 98/162 (60%), Positives = 121/162 (74%)
 Frame = +3

Query: 3   VKAAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAF 182
           V+AA A LN+I LDG IGCLVNGAGLAM TMDIIKL+GG PANFLDVGGGAT   + EAF
Sbjct: 286 VRAAQAGLNFIKLDGDIGCLVNGAGLAMATMDIIKLNGGQPANFLDVGGGATPAAIREAF 345

Query: 183 RLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIA 362
            LITSDPKV AI VNIFGGI+RCD IA G++     L++K+PI+ RLQGT ++ A+ +I 
Sbjct: 346 ELITSDPKVTAIFVNIFGGIVRCDAIAHGLINTVKSLDLKIPIIARLQGTNMEAARQLIN 405

Query: 363 NSDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 488
           +S MKI + D+L  AA   V+L+ +V +AR   V V+F L I
Sbjct: 406 DSGMKIFSIDDLQSAAEKSVQLSKVVKMARDIDVGVEFTLGI 447

>sp|O82662|SUCB_ARATH Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
           precursor (Succinyl-CoA synthetase, beta chain)
           (SCS-beta)
          Length = 421

 Score =  193 bits (490), Expect = 5e-49
 Identities = 95/141 (67%), Positives = 113/141 (80%)
 Frame = +3

Query: 3   VKAAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAF 182
           V AA  +LNYIGLDG IGC+VNGAGLAM TMDIIKLHGG PANFLDVGG A+  QV EAF
Sbjct: 277 VAAAKVDLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEHQVVEAF 336

Query: 183 RLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIA 362
           +++TSD KV AILVNIFGGIM+CDVIA G+V AA E+ +KVP+VVRL+GT V+  K I+ 
Sbjct: 337 KILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKEVALKVPVVVRLEGTNVEQGKRILK 396

Query: 363 NSDMKILACDNLDEAAHMVVK 425
            S MK++  D+LD+AA   VK
Sbjct: 397 ESGMKLITADDLDDAAEKAVK 417

>sp|Q87RE8|SUCC_VIBPA Succinyl-CoA synthetase beta chain (SCS-beta)
          Length = 388

 Score =  183 bits (464), Expect = 5e-46
 Identities = 85/142 (59%), Positives = 112/142 (78%)
 Frame = +3

Query: 9   AAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFRL 188
           AA   LNY+ LDG++GC+VNGAGLAMGTMDI+ LHGG PANFLDVGGGAT  +V EAF++
Sbjct: 245 AAQWELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKI 304

Query: 189 ITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIANS 368
           I SD  V A+LVNIFGGI+RCD+IA+G++ A  E+ + VP+VVRL+GT  D  + ++ANS
Sbjct: 305 ILSDDNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVSVPVVVRLEGTNADLGREVLANS 364

Query: 369 DMKILACDNLDEAAHMVVKLAD 434
           D+ I+A ++L +AA  VV  A+
Sbjct: 365 DVDIIAAESLTDAAQKVVAAAE 386

>sp|Q8EFN8|SUCC_SHEON Succinyl-CoA synthetase beta chain (SCS-beta)
          Length = 388

 Score =  182 bits (462), Expect = 8e-46
 Identities = 84/142 (59%), Positives = 113/142 (79%)
 Frame = +3

Query: 9   AAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFRL 188
           AA   LNY+ LDG++GC+VNGAGLAMGTMDI+ LHGG PANFLDVGGGAT  +V EAF++
Sbjct: 245 AAMFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKI 304

Query: 189 ITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIANS 368
           I SD  V A+LVNIFGGI+RCD+IA+G++ A  E+ +KVP+VVRL+GT  +  + ++A S
Sbjct: 305 ILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGTNAELGREVLAKS 364

Query: 369 DMKILACDNLDEAAHMVVKLAD 434
            + I+A ++L +AA +VVK A+
Sbjct: 365 GLDIIAANSLTDAAELVVKAAE 386

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,437,225
Number of Sequences: 369166
Number of extensions: 1390222
Number of successful extensions: 3744
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3722
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01040

  1. Dr_sW_026_E04
  2. Dr_sW_001_C03
  3. Dr_sW_022_N15