Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_N15
(570 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] bet... 161 1e-39
sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] bet... 160 2e-39
sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-... 158 8e-39
sp|P53588|SUCB1_CAEEL Probable succinyl-CoA ligase [ADP-for... 150 2e-36
sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] beta... 119 4e-27
sp|O94415|SUCB_SCHPO Probable succinyl-CoA ligase [GDP-form... 117 3e-26
sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-form... 109 5e-24
sp|O82662|SUCB_ARATH Succinyl-CoA ligase [GDP-forming] beta... 106 4e-23
sp|Q9EYG9|SUCC_RHIME Succinyl-CoA synthetase beta chain (SC... 103 4e-22
sp|P66868|SUCC_BRUSU Succinyl-CoA synthetase beta chain (SC... 103 4e-22
>sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 161 bits (407), Expect = 1e-39
Identities = 81/106 (76%), Positives = 97/106 (91%)
Frame = +3
Query: 3 TEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAK 182
TEAF+LITSD KV AILVNIFGGIMRCDVIAQG+V A +L IK+P+VVRLQGT+VDDAK
Sbjct: 358 TEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDAK 417
Query: 183 AIIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 320
A+IA+S +KILACD+LDEAA MVVKL++IV+LA++A VDVKF+LPI
Sbjct: 418 ALIADSGLKILACDDLDEAARMVVKLSEIVTLAKQAHVDVKFQLPI 463
>sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 160 bits (406), Expect = 2e-39
Identities = 80/106 (75%), Positives = 97/106 (91%)
Frame = +3
Query: 3 TEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAK 182
TEAF+LITSD KV AILVNIFGGIMRCDVIAQG+V A +L I++P+VVRLQGT+VDDAK
Sbjct: 358 TEAFKLITSDKKVQAILVNIFGGIMRCDVIAQGIVMAVKDLEIRIPVVVRLQGTRVDDAK 417
Query: 183 AIIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 320
A+IA+S +KILACD+LDEAA MVVKL++IV+LA++A VDVKF+LPI
Sbjct: 418 ALIADSGLKILACDDLDEAAKMVVKLSEIVTLAKEAHVDVKFQLPI 463
>sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 425
Score = 158 bits (400), Expect = 8e-39
Identities = 79/106 (74%), Positives = 96/106 (90%)
Frame = +3
Query: 3 TEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAK 182
TEAF+LITSD KV +ILVNIFGGIMRCDVIAQG+V A +L IK+P+VVRLQGT+VDDAK
Sbjct: 320 TEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDAK 379
Query: 183 AIIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 320
A+IA+S +KILACD+LDEAA MVVKL++IV+L ++A VDVKF+LPI
Sbjct: 380 ALIADSGLKILACDDLDEAAKMVVKLSEIVTLTKQAQVDVKFQLPI 425
>sp|P53588|SUCB1_CAEEL Probable succinyl-CoA ligase [ADP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, betaA
chain) (SCS-betaA) (ATP-specific succinyl-CoA synthetase
beta subunit)
Length = 435
Score = 150 bits (380), Expect = 2e-36
Identities = 78/107 (72%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
Frame = +3
Query: 3 TEAFRLITSDP-KVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDA 179
TEAF++IT+D KV AILVNIFGGIMRCDVIAQG++ AA EL++K+PIVVRLQGT+V+DA
Sbjct: 329 TEAFKIITADKDKVSAILVNIFGGIMRCDVIAQGIIQAARELDLKIPIVVRLQGTKVEDA 388
Query: 180 KAIIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 320
KA+IA S ++IL CDNLDEAA MVVKL++IV LAR VDVKFEL I
Sbjct: 389 KALIATSQLRILPCDNLDEAAKMVVKLSNIVDLARATNVDVKFELSI 435
>sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] beta-chain, hydrogenosomal
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta)
Length = 437
Score = 119 bits (299), Expect = 4e-27
Identities = 55/102 (53%), Positives = 82/102 (80%)
Frame = +3
Query: 6 EAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKA 185
EAF++I+SD V AILVNIFGGIMRCD++A+GV+ A EL + +P+VVRLQGT+V++A+
Sbjct: 335 EAFKIISSDKAVSAILVNIFGGIMRCDIVAEGVIQAVKELGLDIPLVVRLQGTKVEEARE 394
Query: 186 IIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFE 311
+I NS++ + A D+LD+AA VV+LA++V LA++ + +K E
Sbjct: 395 LIKNSNLSLYAIDDLDKAAKKVVQLANVVGLAKENGIKIKIE 436
>sp|O94415|SUCB_SCHPO Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 433
Score = 117 bits (292), Expect = 3e-26
Identities = 56/105 (53%), Positives = 78/105 (74%)
Frame = +3
Query: 6 EAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKA 185
EAF LIT+DPK AI VNIFGGI+RCDVIA+G+++ + LN+ +PI+ RLQGT AK
Sbjct: 329 EAFSLITNDPKTTAIFVNIFGGIVRCDVIAKGLISVVSALNLNIPIICRLQGTNQGAAKE 388
Query: 186 IIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 320
+I NS ++I + D+LDEAA + + +V +AR+A V+V FELP+
Sbjct: 389 VINNSGLRIFSFDDLDEAAKKACRFSRVVEMAREADVNVSFELPL 433
>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 447
Score = 109 bits (272), Expect = 5e-24
Identities = 55/105 (52%), Positives = 74/105 (70%)
Frame = +3
Query: 6 EAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKA 185
EAF LITSDPKV AI VNIFGGI+RCD IA G++ L++K+PI+ RLQGT ++ A+
Sbjct: 343 EAFELITSDPKVTAIFVNIFGGIVRCDAIAHGLINTVKSLDLKIPIIARLQGTNMEAARQ 402
Query: 186 IIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 320
+I +S MKI + D+L AA V+L+ +V +AR V V+F L I
Sbjct: 403 LINDSGMKIFSIDDLQSAAEKSVQLSKVVKMARDIDVGVEFTLGI 447
>sp|O82662|SUCB_ARATH Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta)
Length = 421
Score = 106 bits (265), Expect = 4e-23
Identities = 51/84 (60%), Positives = 66/84 (78%)
Frame = +3
Query: 6 EAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKA 185
EAF+++TSD KV AILVNIFGGIM+CDVIA G+V AA E+ +KVP+VVRL+GT V+ K
Sbjct: 334 EAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKEVALKVPVVVRLEGTNVEQGKR 393
Query: 186 IIANSDMKILACDNLDEAAHMVVK 257
I+ S MK++ D+LD+AA VK
Sbjct: 394 ILKESGMKLITADDLDDAAEKAVK 417
>sp|Q9EYG9|SUCC_RHIME Succinyl-CoA synthetase beta chain (SCS-beta)
Length = 398
Score = 103 bits (256), Expect = 4e-22
Identities = 48/84 (57%), Positives = 67/84 (79%)
Frame = +3
Query: 3 TEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAK 182
T+AF++IT+DP V ILVNIFGGIM+CDVIA+GV+AA E+ +KVP+VVRL+GT V+ K
Sbjct: 309 TQAFKIITADPAVKGILVNIFGGIMKCDVIAEGVLAAVKEVGLKVPLVVRLEGTNVELGK 368
Query: 183 AIIANSDMKILACDNLDEAAHMVV 254
II S + +++ D+LD+AA +V
Sbjct: 369 KIINESGLNVISADDLDDAAQKIV 392
>sp|P66868|SUCC_BRUSU Succinyl-CoA synthetase beta chain (SCS-beta)
sp|P66867|SUCC_BRUME Succinyl-CoA synthetase beta chain (SCS-beta)
Length = 398
Score = 103 bits (256), Expect = 4e-22
Identities = 48/84 (57%), Positives = 66/84 (78%)
Frame = +3
Query: 3 TEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAK 182
T AF++IT+DP V ILVNIFGGIM+CDVIA+GV+AA E+ +KVP+VVRL+GT V+ K
Sbjct: 309 TAAFKIITADPAVEGILVNIFGGIMKCDVIAEGVIAAVKEVGLKVPLVVRLEGTNVELGK 368
Query: 183 AIIANSDMKILACDNLDEAAHMVV 254
II S + +++ D+LD+AA +V
Sbjct: 369 KIINESGLNVISADDLDDAAQKIV 392
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,222,436
Number of Sequences: 369166
Number of extensions: 956873
Number of successful extensions: 2209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2196
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)