Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_E04
(734 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] bet... 255 7e-68
sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] bet... 253 3e-67
sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-... 253 5e-67
sp|P53588|SUCB1_CAEEL Probable succinyl-CoA ligase [ADP-for... 246 6e-65
sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] beta... 202 6e-52
sp|O94415|SUCB_SCHPO Probable succinyl-CoA ligase [GDP-form... 198 1e-50
sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-form... 194 3e-49
sp|O82662|SUCB_ARATH Succinyl-CoA ligase [GDP-forming] beta... 193 5e-49
sp|Q87RE8|SUCC_VIBPA Succinyl-CoA synthetase beta chain (SC... 183 5e-46
sp|Q8EFN8|SUCC_SHEON Succinyl-CoA synthetase beta chain (SC... 182 8e-46
>sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 255 bits (652), Expect = 7e-68
Identities = 129/160 (80%), Positives = 146/160 (91%)
Frame = +3
Query: 9 AAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFRL 188
AA ANLNYIGLDG+IGCLVNGAGLAM TMDIIKLHGG PANFLDVGGGAT QVTEAF+L
Sbjct: 304 AAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKL 363
Query: 189 ITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIANS 368
ITSD KV AILVNIFGGIMRCDVIAQG+V A +L IK+P+VVRLQGT+VDDAKA+IA+S
Sbjct: 364 ITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDAKALIADS 423
Query: 369 DMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 488
+KILACD+LDEAA MVVKL++IV+LA++A VDVKF+LPI
Sbjct: 424 GLKILACDDLDEAARMVVKLSEIVTLAKQAHVDVKFQLPI 463
>sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 253 bits (647), Expect = 3e-67
Identities = 127/161 (78%), Positives = 147/161 (91%)
Frame = +3
Query: 6 KAAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFR 185
+AA A++NYIGLDGSIGCLVNGAGLAM TMDIIKLHGG PANFLDVGGGAT QVTEAF+
Sbjct: 303 EAANADINYIGLDGSIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVQQVTEAFK 362
Query: 186 LITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIAN 365
LITSD KV AILVNIFGGIMRCDVIAQG+V A +L I++P+VVRLQGT+VDDAKA+IA+
Sbjct: 363 LITSDKKVQAILVNIFGGIMRCDVIAQGIVMAVKDLEIRIPVVVRLQGTRVDDAKALIAD 422
Query: 366 SDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 488
S +KILACD+LDEAA MVVKL++IV+LA++A VDVKF+LPI
Sbjct: 423 SGLKILACDDLDEAAKMVVKLSEIVTLAKEAHVDVKFQLPI 463
>sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 425
Score = 253 bits (645), Expect = 5e-67
Identities = 127/160 (79%), Positives = 145/160 (90%)
Frame = +3
Query: 9 AAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFRL 188
AA ANLNYIGLDG+IGCLVNGAGLAM TMDIIKLHGG PANFLDVGGGAT QVTEAF+L
Sbjct: 266 AAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKL 325
Query: 189 ITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIANS 368
ITSD KV +ILVNIFGGIMRCDVIAQG+V A +L IK+P+VVRLQGT+VDDAKA+IA+S
Sbjct: 326 ITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDAKALIADS 385
Query: 369 DMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 488
+KILACD+LDEAA MVVKL++IV+L ++A VDVKF+LPI
Sbjct: 386 GLKILACDDLDEAAKMVVKLSEIVTLTKQAQVDVKFQLPI 425
>sp|P53588|SUCB1_CAEEL Probable succinyl-CoA ligase [ADP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, betaA
chain) (SCS-betaA) (ATP-specific succinyl-CoA synthetase
beta subunit)
Length = 435
Score = 246 bits (627), Expect = 6e-65
Identities = 125/163 (76%), Positives = 144/163 (88%), Gaps = 1/163 (0%)
Frame = +3
Query: 3 VKAAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAF 182
++AAAANLNYI LDG+IGC+VNGAGLAM TMDIIKLHGG PANFLDVGGGAT QVTEAF
Sbjct: 273 IRAAAANLNYIRLDGTIGCMVNGAGLAMATMDIIKLHGGEPANFLDVGGGATVEQVTEAF 332
Query: 183 RLITSDP-KVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAII 359
++IT+D KV AILVNIFGGIMRCDVIAQG++ AA EL++K+PIVVRLQGT+V+DAKA+I
Sbjct: 333 KIITADKDKVSAILVNIFGGIMRCDVIAQGIIQAARELDLKIPIVVRLQGTKVEDAKALI 392
Query: 360 ANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 488
A S ++IL CDNLDEAA MVVKL++IV LAR VDVKFEL I
Sbjct: 393 ATSQLRILPCDNLDEAAKMVVKLSNIVDLARATNVDVKFELSI 435
>sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] beta-chain, hydrogenosomal
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta)
Length = 437
Score = 202 bits (515), Expect = 6e-52
Identities = 96/153 (62%), Positives = 128/153 (83%)
Frame = +3
Query: 21 NLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFRLITSD 200
NLNY+G++G+IGCLVNGAGLAM TMDIIKL+GG PANFLDVGG ATA QV EAF++I+SD
Sbjct: 284 NLNYVGMEGNIGCLVNGAGLAMATMDIIKLNGGVPANFLDVGGSATAKQVKEAFKIISSD 343
Query: 201 PKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIANSDMKI 380
V AILVNIFGGIMRCD++A+GV+ A EL + +P+VVRLQGT+V++A+ +I NS++ +
Sbjct: 344 KAVSAILVNIFGGIMRCDIVAEGVIQAVKELGLDIPLVVRLQGTKVEEARELIKNSNLSL 403
Query: 381 LACDNLDEAAHMVVKLADIVSLARKAAVDVKFE 479
A D+LD+AA VV+LA++V LA++ + +K E
Sbjct: 404 YAIDDLDKAAKKVVQLANVVGLAKENGIKIKIE 436
>sp|O94415|SUCB_SCHPO Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 433
Score = 198 bits (504), Expect = 1e-50
Identities = 97/161 (60%), Positives = 123/161 (76%)
Frame = +3
Query: 6 KAAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFR 185
+AA LN+I LDG+IGCLVNGAGLAM TMDIIKLHGG PANFLDVGG A A + EAF
Sbjct: 273 RAAKVGLNFIKLDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGNANAEAIREAFS 332
Query: 186 LITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIAN 365
LIT+DPK AI VNIFGGI+RCDVIA+G+++ + LN+ +PI+ RLQGT AK +I N
Sbjct: 333 LITNDPKTTAIFVNIFGGIVRCDVIAKGLISVVSALNLNIPIICRLQGTNQGAAKEVINN 392
Query: 366 SDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 488
S ++I + D+LDEAA + + +V +AR+A V+V FELP+
Sbjct: 393 SGLRIFSFDDLDEAAKKACRFSRVVEMAREADVNVSFELPL 433
>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 447
Score = 194 bits (492), Expect = 3e-49
Identities = 98/162 (60%), Positives = 121/162 (74%)
Frame = +3
Query: 3 VKAAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAF 182
V+AA A LN+I LDG IGCLVNGAGLAM TMDIIKL+GG PANFLDVGGGAT + EAF
Sbjct: 286 VRAAQAGLNFIKLDGDIGCLVNGAGLAMATMDIIKLNGGQPANFLDVGGGATPAAIREAF 345
Query: 183 RLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIA 362
LITSDPKV AI VNIFGGI+RCD IA G++ L++K+PI+ RLQGT ++ A+ +I
Sbjct: 346 ELITSDPKVTAIFVNIFGGIVRCDAIAHGLINTVKSLDLKIPIIARLQGTNMEAARQLIN 405
Query: 363 NSDMKILACDNLDEAAHMVVKLADIVSLARKAAVDVKFELPI 488
+S MKI + D+L AA V+L+ +V +AR V V+F L I
Sbjct: 406 DSGMKIFSIDDLQSAAEKSVQLSKVVKMARDIDVGVEFTLGI 447
>sp|O82662|SUCB_ARATH Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta)
Length = 421
Score = 193 bits (490), Expect = 5e-49
Identities = 95/141 (67%), Positives = 113/141 (80%)
Frame = +3
Query: 3 VKAAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAF 182
V AA +LNYIGLDG IGC+VNGAGLAM TMDIIKLHGG PANFLDVGG A+ QV EAF
Sbjct: 277 VAAAKVDLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEHQVVEAF 336
Query: 183 RLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIA 362
+++TSD KV AILVNIFGGIM+CDVIA G+V AA E+ +KVP+VVRL+GT V+ K I+
Sbjct: 337 KILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKEVALKVPVVVRLEGTNVEQGKRILK 396
Query: 363 NSDMKILACDNLDEAAHMVVK 425
S MK++ D+LD+AA VK
Sbjct: 397 ESGMKLITADDLDDAAEKAVK 417
>sp|Q87RE8|SUCC_VIBPA Succinyl-CoA synthetase beta chain (SCS-beta)
Length = 388
Score = 183 bits (464), Expect = 5e-46
Identities = 85/142 (59%), Positives = 112/142 (78%)
Frame = +3
Query: 9 AAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFRL 188
AA LNY+ LDG++GC+VNGAGLAMGTMDI+ LHGG PANFLDVGGGAT +V EAF++
Sbjct: 245 AAQWELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKI 304
Query: 189 ITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIANS 368
I SD V A+LVNIFGGI+RCD+IA+G++ A E+ + VP+VVRL+GT D + ++ANS
Sbjct: 305 ILSDDNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVSVPVVVRLEGTNADLGREVLANS 364
Query: 369 DMKILACDNLDEAAHMVVKLAD 434
D+ I+A ++L +AA VV A+
Sbjct: 365 DVDIIAAESLTDAAQKVVAAAE 386
>sp|Q8EFN8|SUCC_SHEON Succinyl-CoA synthetase beta chain (SCS-beta)
Length = 388
Score = 182 bits (462), Expect = 8e-46
Identities = 84/142 (59%), Positives = 113/142 (79%)
Frame = +3
Query: 9 AAAANLNYIGLDGSIGCLVNGAGLAMGTMDIIKLHGGHPANFLDVGGGATAGQVTEAFRL 188
AA LNY+ LDG++GC+VNGAGLAMGTMDI+ LHGG PANFLDVGGGAT +V EAF++
Sbjct: 245 AAMFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGGKPANFLDVGGGATKERVAEAFKI 304
Query: 189 ITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAAELNIKVPIVVRLQGTQVDDAKAIIANS 368
I SD V A+LVNIFGGI+RCD+IA+G++ A E+ +KVP+VVRL+GT + + ++A S
Sbjct: 305 ILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVRLEGTNAELGREVLAKS 364
Query: 369 DMKILACDNLDEAAHMVVKLAD 434
+ I+A ++L +AA +VVK A+
Sbjct: 365 GLDIIAANSLTDAAELVVKAAE 386
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,082,537
Number of Sequences: 369166
Number of extensions: 1385023
Number of successful extensions: 3740
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3718
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)