Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_C03
(625 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] bet... 197 2e-50
sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] bet... 196 3e-50
sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-... 194 2e-49
sp|P53588|SUCB1_CAEEL Probable succinyl-CoA ligase [ADP-for... 187 2e-47
sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] beta... 151 1e-36
sp|O94415|SUCB_SCHPO Probable succinyl-CoA ligase [GDP-form... 147 2e-35
sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-form... 140 3e-33
sp|O82662|SUCB_ARATH Succinyl-CoA ligase [GDP-forming] beta... 138 1e-32
sp|Q87RE8|SUCC_VIBPA Succinyl-CoA synthetase beta chain (SC... 133 3e-31
sp|Q8EFN8|SUCC_SHEON Succinyl-CoA synthetase beta chain (SC... 132 7e-31
>sp|Q9P2R7|SUCB1_HUMAN Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 197 bits (500), Expect = 2e-50
Identities = 99/127 (77%), Positives = 115/127 (90%)
Frame = +2
Query: 2 LHGGHPANFLDVGGGATAGQVTEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAA 181
LHGG PANFLDVGGGAT QVTEAF+LITSD KV AILVNIFGGIMRCDVIAQG+V A
Sbjct: 337 LHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVK 396
Query: 182 ELNIKVPIVVRLQGTQVDDAKAIIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVD 361
+L IK+P+VVRLQGT+VDDAKA+IA+S +KILACD+LDEAA MVVKL++IV+LA++A VD
Sbjct: 397 DLEIKIPVVVRLQGTRVDDAKALIADSGLKILACDDLDEAARMVVKLSEIVTLAKQAHVD 456
Query: 362 VKFELPI 382
VKF+LPI
Sbjct: 457 VKFQLPI 463
>sp|Q9Z2I9|SUCB1_MOUSE Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 463
Score = 196 bits (499), Expect = 3e-50
Identities = 98/127 (77%), Positives = 115/127 (90%)
Frame = +2
Query: 2 LHGGHPANFLDVGGGATAGQVTEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAA 181
LHGG PANFLDVGGGAT QVTEAF+LITSD KV AILVNIFGGIMRCDVIAQG+V A
Sbjct: 337 LHGGTPANFLDVGGGATVQQVTEAFKLITSDKKVQAILVNIFGGIMRCDVIAQGIVMAVK 396
Query: 182 ELNIKVPIVVRLQGTQVDDAKAIIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVD 361
+L I++P+VVRLQGT+VDDAKA+IA+S +KILACD+LDEAA MVVKL++IV+LA++A VD
Sbjct: 397 DLEIRIPVVVRLQGTRVDDAKALIADSGLKILACDDLDEAAKMVVKLSEIVTLAKEAHVD 456
Query: 362 VKFELPI 382
VKF+LPI
Sbjct: 457 VKFQLPI 463
>sp|O97580|SUCB1_PIG Succinyl-CoA ligase [ADP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, betaA chain)
(SCS-betaA) (ATP-specific succinyl-CoA synthetase beta
subunit)
Length = 425
Score = 194 bits (493), Expect = 2e-49
Identities = 97/127 (76%), Positives = 114/127 (89%)
Frame = +2
Query: 2 LHGGHPANFLDVGGGATAGQVTEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAA 181
LHGG PANFLDVGGGAT QVTEAF+LITSD KV +ILVNIFGGIMRCDVIAQG+V A
Sbjct: 299 LHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLSILVNIFGGIMRCDVIAQGIVMAVK 358
Query: 182 ELNIKVPIVVRLQGTQVDDAKAIIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVD 361
+L IK+P+VVRLQGT+VDDAKA+IA+S +KILACD+LDEAA MVVKL++IV+L ++A VD
Sbjct: 359 DLEIKIPVVVRLQGTRVDDAKALIADSGLKILACDDLDEAAKMVVKLSEIVTLTKQAQVD 418
Query: 362 VKFELPI 382
VKF+LPI
Sbjct: 419 VKFQLPI 425
>sp|P53588|SUCB1_CAEEL Probable succinyl-CoA ligase [ADP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, betaA
chain) (SCS-betaA) (ATP-specific succinyl-CoA synthetase
beta subunit)
Length = 435
Score = 187 bits (475), Expect = 2e-47
Identities = 96/128 (75%), Positives = 111/128 (86%), Gaps = 1/128 (0%)
Frame = +2
Query: 2 LHGGHPANFLDVGGGATAGQVTEAFRLITSDP-KVHAILVNIFGGIMRCDVIAQGVVAAA 178
LHGG PANFLDVGGGAT QVTEAF++IT+D KV AILVNIFGGIMRCDVIAQG++ AA
Sbjct: 308 LHGGEPANFLDVGGGATVEQVTEAFKIITADKDKVSAILVNIFGGIMRCDVIAQGIIQAA 367
Query: 179 AELNIKVPIVVRLQGTQVDDAKAIIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAV 358
EL++K+PIVVRLQGT+V+DAKA+IA S ++IL CDNLDEAA MVVKL++IV LAR V
Sbjct: 368 RELDLKIPIVVRLQGTKVEDAKALIATSQLRILPCDNLDEAAKMVVKLSNIVDLARATNV 427
Query: 359 DVKFELPI 382
DVKFEL I
Sbjct: 428 DVKFELSI 435
>sp|P53587|SUCB_NEOFR Succinyl-CoA ligase [GDP-forming] beta-chain, hydrogenosomal
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta)
Length = 437
Score = 151 bits (381), Expect = 1e-36
Identities = 72/124 (58%), Positives = 100/124 (80%)
Frame = +2
Query: 2 LHGGHPANFLDVGGGATAGQVTEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAA 181
L+GG PANFLDVGG ATA QV EAF++I+SD V AILVNIFGGIMRCD++A+GV+ A
Sbjct: 313 LNGGVPANFLDVGGSATAKQVKEAFKIISSDKAVSAILVNIFGGIMRCDIVAEGVIQAVK 372
Query: 182 ELNIKVPIVVRLQGTQVDDAKAIIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVD 361
EL + +P+VVRLQGT+V++A+ +I NS++ + A D+LD+AA VV+LA++V LA++ +
Sbjct: 373 ELGLDIPLVVRLQGTKVEEARELIKNSNLSLYAIDDLDKAAKKVVQLANVVGLAKENGIK 432
Query: 362 VKFE 373
+K E
Sbjct: 433 IKIE 436
>sp|O94415|SUCB_SCHPO Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 433
Score = 147 bits (372), Expect = 2e-35
Identities = 71/127 (55%), Positives = 94/127 (74%)
Frame = +2
Query: 2 LHGGHPANFLDVGGGATAGQVTEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAA 181
LHGG PANFLDVGG A A + EAF LIT+DPK AI VNIFGGI+RCDVIA+G+++ +
Sbjct: 307 LHGGEPANFLDVGGNANAEAIREAFSLITNDPKTTAIFVNIFGGIVRCDVIAKGLISVVS 366
Query: 182 ELNIKVPIVVRLQGTQVDDAKAIIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVD 361
LN+ +PI+ RLQGT AK +I NS ++I + D+LDEAA + + +V +AR+A V+
Sbjct: 367 ALNLNIPIICRLQGTNQGAAKEVINNSGLRIFSFDDLDEAAKKACRFSRVVEMAREADVN 426
Query: 362 VKFELPI 382
V FELP+
Sbjct: 427 VSFELPL 433
>sp|Q9P567|SUCB_NEUCR Probable succinyl-CoA ligase [GDP-forming] beta-chain,
mitochondrial precursor (Succinyl-CoA synthetase, beta
chain) (SCS-beta)
Length = 447
Score = 140 bits (353), Expect = 3e-33
Identities = 70/127 (55%), Positives = 91/127 (71%)
Frame = +2
Query: 2 LHGGHPANFLDVGGGATAGQVTEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAA 181
L+GG PANFLDVGGGAT + EAF LITSDPKV AI VNIFGGI+RCD IA G++
Sbjct: 321 LNGGQPANFLDVGGGATPAAIREAFELITSDPKVTAIFVNIFGGIVRCDAIAHGLINTVK 380
Query: 182 ELNIKVPIVVRLQGTQVDDAKAIIANSDMKILACDNLDEAAHMVVKLADIVSLARKAAVD 361
L++K+PI+ RLQGT ++ A+ +I +S MKI + D+L AA V+L+ +V +AR V
Sbjct: 381 SLDLKIPIIARLQGTNMEAARQLINDSGMKIFSIDDLQSAAEKSVQLSKVVKMARDIDVG 440
Query: 362 VKFELPI 382
V+F L I
Sbjct: 441 VEFTLGI 447
>sp|O82662|SUCB_ARATH Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial
precursor (Succinyl-CoA synthetase, beta chain)
(SCS-beta)
Length = 421
Score = 138 bits (347), Expect = 1e-32
Identities = 67/106 (63%), Positives = 83/106 (78%)
Frame = +2
Query: 2 LHGGHPANFLDVGGGATAGQVTEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAA 181
LHGG PANFLDVGG A+ QV EAF+++TSD KV AILVNIFGGIM+CDVIA G+V AA
Sbjct: 312 LHGGTPANFLDVGGNASEHQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAK 371
Query: 182 ELNIKVPIVVRLQGTQVDDAKAIIANSDMKILACDNLDEAAHMVVK 319
E+ +KVP+VVRL+GT V+ K I+ S MK++ D+LD+AA VK
Sbjct: 372 EVALKVPVVVRLEGTNVEQGKRILKESGMKLITADDLDDAAEKAVK 417
>sp|Q87RE8|SUCC_VIBPA Succinyl-CoA synthetase beta chain (SCS-beta)
Length = 388
Score = 133 bits (335), Expect = 3e-31
Identities = 62/109 (56%), Positives = 84/109 (77%)
Frame = +2
Query: 2 LHGGHPANFLDVGGGATAGQVTEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAA 181
LHGG PANFLDVGGGAT +V EAF++I SD V A+LVNIFGGI+RCD+IA+G++ A
Sbjct: 278 LHGGKPANFLDVGGGATKERVAEAFKIILSDDNVKAVLVNIFGGIVRCDMIAEGIIGAVK 337
Query: 182 ELNIKVPIVVRLQGTQVDDAKAIIANSDMKILACDNLDEAAHMVVKLAD 328
E+ + VP+VVRL+GT D + ++ANSD+ I+A ++L +AA VV A+
Sbjct: 338 EVGVSVPVVVRLEGTNADLGREVLANSDVDIIAAESLTDAAQKVVAAAE 386
>sp|Q8EFN8|SUCC_SHEON Succinyl-CoA synthetase beta chain (SCS-beta)
Length = 388
Score = 132 bits (332), Expect = 7e-31
Identities = 61/109 (55%), Positives = 85/109 (77%)
Frame = +2
Query: 2 LHGGHPANFLDVGGGATAGQVTEAFRLITSDPKVHAILVNIFGGIMRCDVIAQGVVAAAA 181
LHGG PANFLDVGGGAT +V EAF++I SD V A+LVNIFGGI+RCD+IA+G++ A
Sbjct: 278 LHGGKPANFLDVGGGATKERVAEAFKIILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVK 337
Query: 182 ELNIKVPIVVRLQGTQVDDAKAIIANSDMKILACDNLDEAAHMVVKLAD 328
E+ +KVP+VVRL+GT + + ++A S + I+A ++L +AA +VVK A+
Sbjct: 338 EVGVKVPVVVRLEGTNAELGREVLAKSGLDIIAANSLTDAAELVVKAAE 386
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,619,639
Number of Sequences: 369166
Number of extensions: 1068890
Number of successful extensions: 2608
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2592
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)