Planarian EST Database

DrC_01033

Cluster detail
GO Category :
Consensus Sequence :
>DrC_01033 ACTATATTGGGTTTTTATAAAAATGAAAAGTGAAGTTTGTGCATTTTCAGGCTTTAAAGC TACTCCAGGACATGGTAAAAAAATCGCTAAATTAGATGGTAAAGTCCATTTCTTTATTTC AAAAAAGGCTGAAAAATCTTTTGGAATGAAAAGAAATCCACGTGAAATTTCTTGGACTGT TTTATATAGACGTAAAAATAGAAAGGGAAATATGGAGGATGAGAAAACCAAAAAAAGATC TAAACGTTACGTAAAACCAGTTAGAGCTGTTGCAGGTGTAACTAAAGATGATATTTTAAT GAAAAGAAATCAAAAACCAGAATTTAGACAAGCCATGAGAGAGGAGGCTATTAGAGCTGC TAAAGAATTGAACAAAAAGAAGGAAATTGAAAAGAAAAGTAAAAAAGTTGCCGAGTCGAA AAAAGCTACTAATAAGCAACCAAAAATAGTTAACAAAAATCCTCAAGCCAAAGCTCCACG TGTTGGAGGAAAGCGCTAACTGTTTACTTTAATATAAATTTGGAATATTCTC

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01033
         (532 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8JGR4|RL24_BRARE  60S ribosomal protein L24                   140   3e-33
sp|Q9DFQ7|RL24_GILMI  60S ribosomal protein L24                   139   3e-33
sp|Q7Z0T8|RL24_SCHJA  60S ribosomal protein L24                   139   4e-33
sp|Q6Y263|RL24_PAGMA  60S ribosomal protein L24                   137   1e-32
sp|Q8ISQ3|RL24_BRABE  60S ribosomal protein L24                   136   3e-32
sp|Q90YU3|RL24_ICTPU  60S ribosomal protein L24                   135   5e-32
sp|Q9VJY6|RL24_DROME  60S ribosomal protein L24                   135   8e-32
sp|Q8BP67|RL24_MOUSE  60S ribosomal protein L24 >gi|41019239...   135   8e-32
sp|Q962T5|RL24_SPOFR  60S ribosomal protein L24                   127   2e-29
sp|O01868|RL24_CAEEL  60S ribosomal protein L24                   125   8e-29

>sp|Q8JGR4|RL24_BRARE 60S ribosomal protein L24
          Length = 157

 Score =  140 bits (352), Expect = 3e-33
 Identities = 74/158 (46%), Positives = 100/158 (63%)
 Frame = +2

Query: 23  MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
           MK E+C+FSG+K  PGHG++ A++DGKV  F++ K E +F  KRNPR+I+WTVLYRRK++
Sbjct: 1   MKVELCSFSGYKIYPGHGRRYARVDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 382
           KG  E E +KKR++R VK  RA+ G +  +IL KRNQKPE R+A RE+AIR         
Sbjct: 61  KGQSE-EVSKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKEAKKAK 119

Query: 383 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 496
                           + Q + + K  +  APRVGGKR
Sbjct: 120 QATKKQTTQSSKAPAKSAQKQKIAKPMKVSAPRVGGKR 157

>sp|Q9DFQ7|RL24_GILMI 60S ribosomal protein L24
          Length = 157

 Score =  139 bits (351), Expect = 3e-33
 Identities = 74/158 (46%), Positives = 98/158 (62%)
 Frame = +2

Query: 23  MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
           MK E+C+FSG+K  PGHG++ A++DGKV  F++ K E +F  KRNPR+I+WTVLYRRK++
Sbjct: 1   MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHK 60

Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 382
           KG  E E TKKR++R VK  RA+ G +  +I+ KRNQKPE R+A RE+AIR         
Sbjct: 61  KGQSE-EVTKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKESKKAK 119

Query: 383 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 496
                             Q   + K  +  APRVGGKR
Sbjct: 120 QATKKPAAASAKTSAKTAQKPKIAKPMKISAPRVGGKR 157

>sp|Q7Z0T8|RL24_SCHJA 60S ribosomal protein L24
          Length = 156

 Score =  139 bits (350), Expect = 4e-33
 Identities = 76/163 (46%), Positives = 100/163 (61%), Gaps = 5/163 (3%)
 Frame = +2

Query: 23  MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
           MK EVC++SGFK  PGHGK++ ++DG+  +FI+KK+E+S  +KRNpreISWTVLYRRK +
Sbjct: 1   MKLEVCSYSGFKVYPGHGKRVIRVDGRSFYFINKKSERSHYLKRNpreISWTVLYRRKYK 60

Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 382
           KG M +E+TK       K  R +AG +  +I+ KRNQKPE R+AMR++AIR         
Sbjct: 61  KG-MSEEQTKNELSVLTKTARGIAGASLAEIMAKRNQKPEVRKAMRDQAIR------AAK 113

Query: 383 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAK-----APRVGGKR 496
                            K+P +  K   AK     APRVGGKR
Sbjct: 114 EKQKQKELEKKAKKVEKKKPTLAPKQKAAKITQKPAPRVGGKR 156

>sp|Q6Y263|RL24_PAGMA 60S ribosomal protein L24
          Length = 157

 Score =  137 bits (346), Expect = 1e-32
 Identities = 73/158 (46%), Positives = 97/158 (61%)
 Frame = +2

Query: 23  MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
           MK E+C+FSG+K  PGHG++ A++DGKV  F++ K E +F  KRNPR+I+WTVLYRRK++
Sbjct: 1   MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHK 60

Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 382
           KG  E E  KKR++R VK  RA+ G +  +I+ KRNQKPE R+A RE+AIR         
Sbjct: 61  KGQSE-EVAKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKEAKKAK 119

Query: 383 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 496
                             Q   + K  +  APRVGGKR
Sbjct: 120 QAAKKPAAPSAKASTKTAQKPKIAKPMKISAPRVGGKR 157

>sp|Q8ISQ3|RL24_BRABE 60S ribosomal protein L24
          Length = 154

 Score =  136 bits (343), Expect = 3e-32
 Identities = 76/159 (47%), Positives = 98/159 (61%), Gaps = 1/159 (0%)
 Frame = +2

Query: 23  MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
           MK E+C +SG+K  PGHGK+ A+ DG+V+ F++ K E SF MKRNpreI+WTVLYRRK++
Sbjct: 1   MKIELCLYSGYKIYPGHGKRYARTDGRVYTFLNAKCEASFLMKRNpreITWTVLYRRKHK 60

Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIR-XXXXXXXX 379
           KG  E E  KKRS+R  K  RA+ G +  +I+ KRNQKPE R+A RE+A++         
Sbjct: 61  KGQQE-EIQKKRSRRTAKFQRAITGASLTEIMAKRNQKPEVRKAQREQAVKAAKEKKKAD 119

Query: 380 XXXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 496
                             K PK V    +A APRVGGKR
Sbjct: 120 QVGKRKAPAKARATAPKTKAPKTV----KAAAPRVGGKR 154

>sp|Q90YU3|RL24_ICTPU 60S ribosomal protein L24
          Length = 157

 Score =  135 bits (341), Expect = 5e-32
 Identities = 74/158 (46%), Positives = 96/158 (60%)
 Frame = +2

Query: 23  MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
           MK E+C+FSG+K  PGHG   A++DGKV  F++ K E +F  KRNPR+I+WTVLYRRK++
Sbjct: 1   MKVELCSFSGYKIYPGHGPVYARIDGKVFQFLNAKCESAFLTKRNPRQINWTVLYRRKHK 60

Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 382
           KG  E E TKKR++R VK  RA+ G +  +IL KRNQKPE R+A RE+AIR         
Sbjct: 61  KGQSE-EVTKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKEAKKAK 119

Query: 383 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 496
                               + + K  +  APRVGGKR
Sbjct: 120 QATKKVSTQSTKAPAKAAPKQKIAKPMKVSAPRVGGKR 157

>sp|Q9VJY6|RL24_DROME 60S ribosomal protein L24
          Length = 155

 Score =  135 bits (339), Expect = 8e-32
 Identities = 74/158 (46%), Positives = 97/158 (61%)
 Frame = +2

Query: 23  MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
           MK  +CAFSG+K  PGHGK + K+DGK   F+ KK E+S+ MKRNPR+++WTVLYRRK+R
Sbjct: 1   MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHR 60

Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 382
           KG +E+E +KKR++R  K  RA+ G +  +IL KRN KPE R+A R++AI+         
Sbjct: 61  KG-IEEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEVRKAQRDQAIKVAKEQKRAV 119

Query: 383 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 496
                            KQ     K  Q  APRVGGKR
Sbjct: 120 KAAKKAAAPAPAKKSAPKQK--AAKVTQKAAPRVGGKR 155

>sp|Q8BP67|RL24_MOUSE 60S ribosomal protein L24
 sp|P83732|RL24_RAT 60S ribosomal protein L24 (L30)
 sp|Q862I1|RL24_BOVIN 60S ribosomal protein L24 (Ribosomal protein L30)
 sp|Q66WF5|RL24_FELCA 60S ribosomal protein L24 (Ribosomal protein L30)
 sp|P83731|RL24_HUMAN 60S ribosomal protein L24 (Ribosomal protein L30)
 sp|P61122|RL24_MACFA 60S ribosomal protein L24
          Length = 157

 Score =  135 bits (339), Expect = 8e-32
 Identities = 73/158 (46%), Positives = 96/158 (60%)
 Frame = +2

Query: 23  MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
           MK E+C+FSG+K  PGHG++ A+ DGKV  F++ K E +F  KRNPR+I+WTVLYRRK++
Sbjct: 1   MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60

Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 382
           KG  E E  KKR++R VK  RA+ G +  DI+ KRNQKPE R+A RE+AIR         
Sbjct: 61  KGQSE-EIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAK 119

Query: 383 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 496
                               + + K  +  APRVGGKR
Sbjct: 120 QASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157

>sp|Q962T5|RL24_SPOFR 60S ribosomal protein L24
          Length = 155

 Score =  127 bits (318), Expect = 2e-29
 Identities = 69/158 (43%), Positives = 93/158 (58%)
 Frame = +2

Query: 23  MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
           MK  +CA+SG+K  PGHGK + K+DGK   F++ K E +  M+RNPR+++WTVLYRRK +
Sbjct: 1   MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 60

Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 382
           KG  E+E+TKKR++R  K  RA+ G +  DI+ KRN KPE R+A R++AI+         
Sbjct: 61  KG-QEEEQTKKRTRRTQKYQRAIVGASLSDIMAKRNMKPEVRKAQRDQAIKAAKEQKKST 119

Query: 383 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 496
                            K      K  Q  APRVGGKR
Sbjct: 120 KAAKKASAPAPKAKAAPKAK--AAKVSQKSAPRVGGKR 155

>sp|O01868|RL24_CAEEL 60S ribosomal protein L24
          Length = 159

 Score =  125 bits (313), Expect = 8e-29
 Identities = 70/160 (43%), Positives = 96/160 (60%), Gaps = 2/160 (1%)
 Frame = +2

Query: 23  MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
           MK E C +SG+K  PGHGK++ + DGKV  F+S KA K   ++RNPR+I WTVLYR KN+
Sbjct: 1   MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNK 60

Query: 203 KG-NMEDEKTKKRSKRYVKPV-RAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXX 376
           KG + +++ T+K++K+ V+ V RAVAG++ D IL KRNQ  +FR+  RE+A +       
Sbjct: 61  KGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRNQTEDFRRQQREQAAKIAKDANK 120

Query: 377 XXXXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 496
                               Q K   KN +  APRVGGKR
Sbjct: 121 AVRAAKAAANKEKKASQPKTQQKTA-KNVKTAAPRVGGKR 159

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,572,020
Number of Sequences: 369166
Number of extensions: 881751
Number of successful extensions: 2482
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2446
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3600891075
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01033

Planaria EST Database

DrC_01033

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail