Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_B20
(433 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7Z0T8|RL24_SCHJA 60S ribosomal protein L24 134 1e-31
sp|Q9DFQ7|RL24_GILMI 60S ribosomal protein L24 132 2e-31
sp|Q8ISQ3|RL24_BRABE 60S ribosomal protein L24 131 5e-31
sp|Q8JGR4|RL24_BRARE 60S ribosomal protein L24 131 5e-31
sp|Q6Y263|RL24_PAGMA 60S ribosomal protein L24 130 9e-31
sp|Q90YU3|RL24_ICTPU 60S ribosomal protein L24 130 9e-31
sp|Q8BP67|RL24_MOUSE 60S ribosomal protein L24 >gi|41019239... 130 1e-30
sp|Q9VJY6|RL24_DROME 60S ribosomal protein L24 129 2e-30
sp|Q962T5|RL24_SPOFR 60S ribosomal protein L24 123 1e-28
sp|Q6F444|RL24_PLUXY 60S ribosomal protein L24 121 5e-28
>sp|Q7Z0T8|RL24_SCHJA 60S ribosomal protein L24
Length = 156
Score = 134 bits (336), Expect = 1e-31
Identities = 63/111 (56%), Positives = 85/111 (76%)
Frame = +2
Query: 23 MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
MK EVC++SGFK PGHGK++ ++DG+ +FI+KK+E+S +KRNpreISWTVLYRRK +
Sbjct: 1 MKLEVCSYSGFKVYPGHGKRVIRVDGRSFYFINKKSERSHYLKRNpreISWTVLYRRKYK 60
Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIR 355
KG M +E+TK K R +AG + +I+ KRNQKPE R+AMR++AIR
Sbjct: 61 KG-MSEEQTKNELSVLTKTARGIAGASLAEIMAKRNQKPEVRKAMRDQAIR 110
>sp|Q9DFQ7|RL24_GILMI 60S ribosomal protein L24
Length = 157
Score = 132 bits (333), Expect = 2e-31
Identities = 64/111 (57%), Positives = 86/111 (77%)
Frame = +2
Query: 23 MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
MK E+C+FSG+K PGHG++ A++DGKV F++ K E +F KRNPR+I+WTVLYRRK++
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHK 60
Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIR 355
KG E E TKKR++R VK RA+ G + +I+ KRNQKPE R+A RE+AIR
Sbjct: 61 KGQSE-EVTKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAIR 110
>sp|Q8ISQ3|RL24_BRABE 60S ribosomal protein L24
Length = 154
Score = 131 bits (330), Expect = 5e-31
Identities = 63/111 (56%), Positives = 84/111 (75%)
Frame = +2
Query: 23 MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
MK E+C +SG+K PGHGK+ A+ DG+V+ F++ K E SF MKRNpreI+WTVLYRRK++
Sbjct: 1 MKIELCLYSGYKIYPGHGKRYARTDGRVYTFLNAKCEASFLMKRNpreITWTVLYRRKHK 60
Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIR 355
KG E E KKRS+R K RA+ G + +I+ KRNQKPE R+A RE+A++
Sbjct: 61 KGQQE-EIQKKRSRRTAKFQRAITGASLTEIMAKRNQKPEVRKAQREQAVK 110
>sp|Q8JGR4|RL24_BRARE 60S ribosomal protein L24
Length = 157
Score = 131 bits (330), Expect = 5e-31
Identities = 64/111 (57%), Positives = 86/111 (77%)
Frame = +2
Query: 23 MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
MK E+C+FSG+K PGHG++ A++DGKV F++ K E +F KRNPR+I+WTVLYRRK++
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARVDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIR 355
KG E E +KKR++R VK RA+ G + +IL KRNQKPE R+A RE+AIR
Sbjct: 61 KGQSE-EVSKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAIR 110
>sp|Q6Y263|RL24_PAGMA 60S ribosomal protein L24
Length = 157
Score = 130 bits (328), Expect = 9e-31
Identities = 63/111 (56%), Positives = 85/111 (76%)
Frame = +2
Query: 23 MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
MK E+C+FSG+K PGHG++ A++DGKV F++ K E +F KRNPR+I+WTVLYRRK++
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARIDGKVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHK 60
Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIR 355
KG E E KKR++R VK RA+ G + +I+ KRNQKPE R+A RE+AIR
Sbjct: 61 KGQSE-EVAKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAIR 110
>sp|Q90YU3|RL24_ICTPU 60S ribosomal protein L24
Length = 157
Score = 130 bits (328), Expect = 9e-31
Identities = 65/111 (58%), Positives = 84/111 (75%)
Frame = +2
Query: 23 MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
MK E+C+FSG+K PGHG A++DGKV F++ K E +F KRNPR+I+WTVLYRRK++
Sbjct: 1 MKVELCSFSGYKIYPGHGPVYARIDGKVFQFLNAKCESAFLTKRNPRQINWTVLYRRKHK 60
Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIR 355
KG E E TKKR++R VK RA+ G + +IL KRNQKPE R+A RE+AIR
Sbjct: 61 KGQSE-EVTKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAIR 110
>sp|Q8BP67|RL24_MOUSE 60S ribosomal protein L24
sp|P83732|RL24_RAT 60S ribosomal protein L24 (L30)
sp|Q862I1|RL24_BOVIN 60S ribosomal protein L24 (Ribosomal protein L30)
sp|Q66WF5|RL24_FELCA 60S ribosomal protein L24 (Ribosomal protein L30)
sp|P83731|RL24_HUMAN 60S ribosomal protein L24 (Ribosomal protein L30)
sp|P61122|RL24_MACFA 60S ribosomal protein L24
Length = 157
Score = 130 bits (327), Expect = 1e-30
Identities = 64/111 (57%), Positives = 84/111 (75%)
Frame = +2
Query: 23 MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
MK E+C+FSG+K PGHG++ A+ DGKV F++ K E +F KRNPR+I+WTVLYRRK++
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIR 355
KG E E KKR++R VK RA+ G + DI+ KRNQKPE R+A RE+AIR
Sbjct: 61 KGQSE-EIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIR 110
>sp|Q9VJY6|RL24_DROME 60S ribosomal protein L24
Length = 155
Score = 129 bits (325), Expect = 2e-30
Identities = 62/111 (55%), Positives = 85/111 (76%)
Frame = +2
Query: 23 MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
MK +CAFSG+K PGHGK + K+DGK F+ KK E+S+ MKRNPR+++WTVLYRRK+R
Sbjct: 1 MKIGLCAFSGYKIYPGHGKTMVKIDGKSFTFLDKKCERSYLMKRNPRKVTWTVLYRRKHR 60
Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIR 355
KG +E+E +KKR++R K RA+ G + +IL KRN KPE R+A R++AI+
Sbjct: 61 KG-IEEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEVRKAQRDQAIK 110
>sp|Q962T5|RL24_SPOFR 60S ribosomal protein L24
Length = 155
Score = 123 bits (309), Expect = 1e-28
Identities = 58/111 (52%), Positives = 82/111 (73%)
Frame = +2
Query: 23 MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
MK +CA+SG+K PGHGK + K+DGK F++ K E + M+RNPR+++WTVLYRRK +
Sbjct: 1 MKIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 60
Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIR 355
KG E+E+TKKR++R K RA+ G + DI+ KRN KPE R+A R++AI+
Sbjct: 61 KG-QEEEQTKKRTRRTQKYQRAIVGASLSDIMAKRNMKPEVRKAQRDQAIK 110
>sp|Q6F444|RL24_PLUXY 60S ribosomal protein L24
Length = 155
Score = 121 bits (304), Expect = 5e-28
Identities = 58/111 (52%), Positives = 81/111 (72%)
Frame = +2
Query: 23 MKSEVCAFSGFKATPGHGKKIAKLDGKVHFFISKKAEKSFGMKRNpreISWTVLYRRKNR 202
MK +CA+SG+K PGHGK + K+DGK F++ K E + M+RNPR+++WTVLYRRK +
Sbjct: 1 MKIGLCAYSGYKIYPGHGKTMVKVDGKNFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFK 60
Query: 203 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIR 355
KG E+E+ KKR++R K RA+ G + DI+ KRN KPE R+A RE+AI+
Sbjct: 61 KG-QEEEQAKKRTRRTQKYQRAIVGASLSDIMAKRNMKPEVRKAQREQAIK 110
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,021,758
Number of Sequences: 369166
Number of extensions: 735231
Number of successful extensions: 2187
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2162
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)