Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_F14
(333 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8JGR4|RL24_BRARE 60S ribosomal protein L24 63 2e-10
sp|Q9DFQ7|RL24_GILMI 60S ribosomal protein L24 62 4e-10
sp|Q90YU3|RL24_ICTPU 60S ribosomal protein L24 61 9e-10
sp|Q6Y263|RL24_PAGMA 60S ribosomal protein L24 60 2e-09
sp|Q8BP67|RL24_MOUSE 60S ribosomal protein L24 >gi|41019239... 59 5e-09
sp|Q962T5|RL24_SPOFR 60S ribosomal protein L24 58 8e-09
sp|Q8ISQ3|RL24_BRABE 60S ribosomal protein L24 57 2e-08
sp|Q6F444|RL24_PLUXY 60S ribosomal protein L24 57 2e-08
sp|Q9VJY6|RL24_DROME 60S ribosomal protein L24 56 2e-08
sp|Q7Z0T8|RL24_SCHJA 60S ribosomal protein L24 56 2e-08
>sp|Q8JGR4|RL24_BRARE 60S ribosomal protein L24
Length = 157
Score = 62.8 bits (151), Expect = 2e-10
Identities = 37/98 (37%), Positives = 50/98 (51%)
Frame = +1
Query: 4 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 183
K +E +KKR++R VK RA+ G + +IL KRNQKPE R+A RE+AIR
Sbjct: 60 KKGQSEEVSKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKEAKKAK 119
Query: 184 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 297
+ Q + + K + APRVGGKR
Sbjct: 120 QATKKQTTQSSKAPAKSAQKQKIAKPMKVSAPRVGGKR 157
>sp|Q9DFQ7|RL24_GILMI 60S ribosomal protein L24
Length = 157
Score = 62.0 bits (149), Expect = 4e-10
Identities = 37/98 (37%), Positives = 48/98 (48%)
Frame = +1
Query: 4 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 183
K +E TKKR++R VK RA+ G + +I+ KRNQKPE R+A RE+AIR
Sbjct: 60 KKGQSEEVTKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKESKKAK 119
Query: 184 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 297
Q + K + APRVGGKR
Sbjct: 120 QATKKPAAASAKTSAKTAQKPKIAKPMKISAPRVGGKR 157
>sp|Q90YU3|RL24_ICTPU 60S ribosomal protein L24
Length = 157
Score = 60.8 bits (146), Expect = 9e-10
Identities = 37/98 (37%), Positives = 48/98 (48%)
Frame = +1
Query: 4 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 183
K +E TKKR++R VK RA+ G + +IL KRNQKPE R+A RE+AIR
Sbjct: 60 KKGQSEEVTKKRTRRAVKFQRAITGASLAEILAKRNQKPEVRKAQREQAIRAAKEAKKAK 119
Query: 184 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 297
+ + K + APRVGGKR
Sbjct: 120 QATKKVSTQSTKAPAKAAPKQKIAKPMKVSAPRVGGKR 157
>sp|Q6Y263|RL24_PAGMA 60S ribosomal protein L24
Length = 157
Score = 60.1 bits (144), Expect = 2e-09
Identities = 36/98 (36%), Positives = 47/98 (47%)
Frame = +1
Query: 4 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 183
K +E KKR++R VK RA+ G + +I+ KRNQKPE R+A RE+AIR
Sbjct: 60 KKGQSEEVAKKRTRRAVKFQRAITGASLAEIMAKRNQKPEVRKAQREQAIRAAKEAKKAK 119
Query: 184 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 297
Q + K + APRVGGKR
Sbjct: 120 QAAKKPAAPSAKASTKTAQKPKIAKPMKISAPRVGGKR 157
>sp|Q8BP67|RL24_MOUSE 60S ribosomal protein L24
sp|P83732|RL24_RAT 60S ribosomal protein L24 (L30)
sp|Q862I1|RL24_BOVIN 60S ribosomal protein L24 (Ribosomal protein L30)
sp|Q66WF5|RL24_FELCA 60S ribosomal protein L24 (Ribosomal protein L30)
sp|P83731|RL24_HUMAN 60S ribosomal protein L24 (Ribosomal protein L30)
sp|P61122|RL24_MACFA 60S ribosomal protein L24
Length = 157
Score = 58.5 bits (140), Expect = 5e-09
Identities = 36/98 (36%), Positives = 47/98 (47%)
Frame = +1
Query: 4 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 183
K +E KKR++R VK RA+ G + DI+ KRNQKPE R+A RE+AIR
Sbjct: 60 KKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAK 119
Query: 184 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 297
+ + K + APRVGGKR
Sbjct: 120 QASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
>sp|Q962T5|RL24_SPOFR 60S ribosomal protein L24
Length = 155
Score = 57.8 bits (138), Expect = 8e-09
Identities = 36/98 (36%), Positives = 47/98 (47%)
Frame = +1
Query: 4 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 183
K E+E+TKKR++R K RA+ G + DI+ KRN KPE R+A R++AI+
Sbjct: 60 KKGQEEEQTKKRTRRTQKYQRAIVGASLSDIMAKRNMKPEVRKAQRDQAIKAAKEQKKST 119
Query: 184 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 297
K K Q APRVGGKR
Sbjct: 120 KAAKKASAPAPKAKAAPKAK--AAKVSQKSAPRVGGKR 155
>sp|Q8ISQ3|RL24_BRABE 60S ribosomal protein L24
Length = 154
Score = 56.6 bits (135), Expect = 2e-08
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +1
Query: 4 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIR-XXXXXXXX 180
K ++E KKRS+R K RA+ G + +I+ KRNQKPE R+A RE+A++
Sbjct: 60 KKGQQEEIQKKRSRRTAKFQRAITGASLTEIMAKRNQKPEVRKAQREQAVKAAKEKKKAD 119
Query: 181 XXXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 297
K PK V +A APRVGGKR
Sbjct: 120 QVGKRKAPAKARATAPKTKAPKTV----KAAAPRVGGKR 154
>sp|Q6F444|RL24_PLUXY 60S ribosomal protein L24
Length = 155
Score = 56.6 bits (135), Expect = 2e-08
Identities = 36/98 (36%), Positives = 46/98 (46%)
Frame = +1
Query: 4 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 183
K E+E+ KKR++R K RA+ G + DI+ KRN KPE R+A RE+AI+
Sbjct: 60 KKGQEEEQAKKRTRRTQKYQRAIVGASLSDIMAKRNMKPEVRKAQREQAIKQAKEQKKST 119
Query: 184 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 297
K K Q APRVGGKR
Sbjct: 120 KASKKTTAPPTKGKAAPKAK--AAKVSQKAAPRVGGKR 155
>sp|Q9VJY6|RL24_DROME 60S ribosomal protein L24
Length = 155
Score = 56.2 bits (134), Expect = 2e-08
Identities = 38/99 (38%), Positives = 50/99 (50%)
Frame = +1
Query: 1 RKGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXX 180
RKG +E+E +KKR++R K RA+ G + +IL KRN KPE R+A R++AI+
Sbjct: 60 RKG-IEEEASKKRTRRTQKFQRAIVGASLAEILAKRNMKPEVRKAQRDQAIKVAKEQKRA 118
Query: 181 XXXXXXXXXXXXXXXXTNKQPKIVNKNPQAKAPRVGGKR 297
KQ K Q APRVGGKR
Sbjct: 119 VKAAKKAAAPAPAKKSAPKQK--AAKVTQKAAPRVGGKR 155
>sp|Q7Z0T8|RL24_SCHJA 60S ribosomal protein L24
Length = 156
Score = 56.2 bits (134), Expect = 2e-08
Identities = 37/103 (35%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Frame = +1
Query: 4 KGNMEDEKTKKRSKRYVKPVRAVAGVTKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXX 183
K M +E+TK K R +AG + +I+ KRNQKPE R+AMR++AIR
Sbjct: 60 KKGMSEEQTKNELSVLTKTARGIAGASLAEIMAKRNQKPEVRKAMRDQAIR------AAK 113
Query: 184 XXXXXXXXXXXXXXXTNKQPKIVNKNPQAK-----APRVGGKR 297
K+P + K AK APRVGGKR
Sbjct: 114 EKQKQKELEKKAKKVEKKKPTLAPKQKAAKITQKPAPRVGGKR 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,377,110
Number of Sequences: 369166
Number of extensions: 354452
Number of successful extensions: 776
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 68,354,980
effective HSP length: 78
effective length of database: 53,945,650
effective search space used: 1726260800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)