Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_H19
(433 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8JGR4|RL24_BRARE 60S ribosomal protein L24 103 1e-22
sp|Q9DFQ7|RL24_GILMI 60S ribosomal protein L24 103 2e-22
sp|Q8ISQ3|RL24_BRABE 60S ribosomal protein L24 102 4e-22
sp|Q90YU3|RL24_ICTPU 60S ribosomal protein L24 102 4e-22
sp|Q6Y263|RL24_PAGMA 60S ribosomal protein L24 101 8e-22
sp|Q7Z0T8|RL24_SCHJA 60S ribosomal protein L24 101 8e-22
sp|Q9VJY6|RL24_DROME 60S ribosomal protein L24 100 2e-21
sp|Q8BP67|RL24_MOUSE 60S ribosomal protein L24 >gi|41019239... 100 2e-21
sp|Q962T5|RL24_SPOFR 60S ribosomal protein L24 93 2e-19
sp|Q6F444|RL24_PLUXY 60S ribosomal protein L24 91 8e-19
>sp|Q8JGR4|RL24_BRARE 60S ribosomal protein L24
Length = 157
Score = 103 bits (258), Expect = 1e-22
Identities = 59/132 (44%), Positives = 78/132 (59%)
Frame = +2
Query: 2 KVHFFISKKAEKSFGMKRNpreISWTVLYRRKNRKGNMEDEKTKKRSKRYVKPVRAVAGV 181
KV F++ K E +F KRNPR+I+WTVLYRRK++KG E E +KKR++R VK RA+ G
Sbjct: 27 KVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSE-EVSKKRTRRAVKFQRAITGA 85
Query: 182 TKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTNKQPKIVNKN 361
+ +IL KRNQKPE R+A RE+AIR + Q + + K
Sbjct: 86 SLAEILAKRNQKPEVRKAQREQAIRAAKEAKKAKQATKKQTTQSSKAPAKSAQKQKIAKP 145
Query: 362 PQAKAPRVGGKR 397
+ APRVGGKR
Sbjct: 146 MKVSAPRVGGKR 157
>sp|Q9DFQ7|RL24_GILMI 60S ribosomal protein L24
Length = 157
Score = 103 bits (256), Expect = 2e-22
Identities = 59/132 (44%), Positives = 76/132 (57%)
Frame = +2
Query: 2 KVHFFISKKAEKSFGMKRNpreISWTVLYRRKNRKGNMEDEKTKKRSKRYVKPVRAVAGV 181
KV F++ K E +F KRNPR+I+WTVLYRRK++KG E E TKKR++R VK RA+ G
Sbjct: 27 KVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKKGQSE-EVTKKRTRRAVKFQRAITGA 85
Query: 182 TKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTNKQPKIVNKN 361
+ +I+ KRNQKPE R+A RE+AIR Q + K
Sbjct: 86 SLAEIMAKRNQKPEVRKAQREQAIRAAKESKKAKQATKKPAAASAKTSAKTAQKPKIAKP 145
Query: 362 PQAKAPRVGGKR 397
+ APRVGGKR
Sbjct: 146 MKISAPRVGGKR 157
>sp|Q8ISQ3|RL24_BRABE 60S ribosomal protein L24
Length = 154
Score = 102 bits (253), Expect = 4e-22
Identities = 61/133 (45%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Frame = +2
Query: 2 KVHFFISKKAEKSFGMKRNpreISWTVLYRRKNRKGNMEDEKTKKRSKRYVKPVRAVAGV 181
+V+ F++ K E SF MKRNpreI+WTVLYRRK++KG E E KKRS+R K RA+ G
Sbjct: 27 RVYTFLNAKCEASFLMKRNpreITWTVLYRRKHKKGQQE-EIQKKRSRRTAKFQRAITGA 85
Query: 182 TKDDILMKRNQKPEFRQAMREEAIR-XXXXXXXXXXXXXXXXXXXXXXXXTNKQPKIVNK 358
+ +I+ KRNQKPE R+A RE+A++ K PK V
Sbjct: 86 SLTEIMAKRNQKPEVRKAQREQAVKAAKEKKKADQVGKRKAPAKARATAPKTKAPKTV-- 143
Query: 359 NPQAKAPRVGGKR 397
+A APRVGGKR
Sbjct: 144 --KAAAPRVGGKR 154
>sp|Q90YU3|RL24_ICTPU 60S ribosomal protein L24
Length = 157
Score = 102 bits (253), Expect = 4e-22
Identities = 59/132 (44%), Positives = 76/132 (57%)
Frame = +2
Query: 2 KVHFFISKKAEKSFGMKRNpreISWTVLYRRKNRKGNMEDEKTKKRSKRYVKPVRAVAGV 181
KV F++ K E +F KRNPR+I+WTVLYRRK++KG E E TKKR++R VK RA+ G
Sbjct: 27 KVFQFLNAKCESAFLTKRNPRQINWTVLYRRKHKKGQSE-EVTKKRTRRAVKFQRAITGA 85
Query: 182 TKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTNKQPKIVNKN 361
+ +IL KRNQKPE R+A RE+AIR + + K
Sbjct: 86 SLAEILAKRNQKPEVRKAQREQAIRAAKEAKKAKQATKKVSTQSTKAPAKAAPKQKIAKP 145
Query: 362 PQAKAPRVGGKR 397
+ APRVGGKR
Sbjct: 146 MKVSAPRVGGKR 157
>sp|Q6Y263|RL24_PAGMA 60S ribosomal protein L24
Length = 157
Score = 101 bits (251), Expect = 8e-22
Identities = 58/132 (43%), Positives = 75/132 (56%)
Frame = +2
Query: 2 KVHFFISKKAEKSFGMKRNpreISWTVLYRRKNRKGNMEDEKTKKRSKRYVKPVRAVAGV 181
KV F++ K E +F KRNPR+I+WTVLYRRK++KG E E KKR++R VK RA+ G
Sbjct: 27 KVFQFLNAKCESAFLAKRNPRQINWTVLYRRKHKKGQSE-EVAKKRTRRAVKFQRAITGA 85
Query: 182 TKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTNKQPKIVNKN 361
+ +I+ KRNQKPE R+A RE+AIR Q + K
Sbjct: 86 SLAEIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQAAKKPAAPSAKASTKTAQKPKIAKP 145
Query: 362 PQAKAPRVGGKR 397
+ APRVGGKR
Sbjct: 146 MKISAPRVGGKR 157
>sp|Q7Z0T8|RL24_SCHJA 60S ribosomal protein L24
Length = 156
Score = 101 bits (251), Expect = 8e-22
Identities = 60/134 (44%), Positives = 77/134 (57%), Gaps = 5/134 (3%)
Frame = +2
Query: 11 FFISKKAEKSFGMKRNpreISWTVLYRRKNRKGNMEDEKTKKRSKRYVKPVRAVAGVTKD 190
+FI+KK+E+S +KRNpreISWTVLYRRK +KG M +E+TK K R +AG +
Sbjct: 30 YFINKKSERSHYLKRNpreISWTVLYRRKYKKG-MSEEQTKNELSVLTKTARGIAGASLA 88
Query: 191 DILMKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTNKQPKIVNKNPQA 370
+I+ KRNQKPE R+AMR++AIR K+P + K A
Sbjct: 89 EIMAKRNQKPEVRKAMRDQAIR------AAKEKQKQKELEKKAKKVEKKKPTLAPKQKAA 142
Query: 371 K-----APRVGGKR 397
K APRVGGKR
Sbjct: 143 KITQKPAPRVGGKR 156
>sp|Q9VJY6|RL24_DROME 60S ribosomal protein L24
Length = 155
Score = 99.8 bits (247), Expect = 2e-21
Identities = 57/128 (44%), Positives = 76/128 (59%)
Frame = +2
Query: 14 FISKKAEKSFGMKRNpreISWTVLYRRKNRKGNMEDEKTKKRSKRYVKPVRAVAGVTKDD 193
F+ KK E+S+ MKRNPR+++WTVLYRRK+RKG +E+E +KKR++R K RA+ G + +
Sbjct: 31 FLDKKCERSYLMKRNPRKVTWTVLYRRKHRKG-IEEEASKKRTRRTQKFQRAIVGASLAE 89
Query: 194 ILMKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTNKQPKIVNKNPQAK 373
IL KRN KPE R+A R++AI+ KQ K Q
Sbjct: 90 ILAKRNMKPEVRKAQRDQAIKVAKEQKRAVKAAKKAAAPAPAKKSAPKQK--AAKVTQKA 147
Query: 374 APRVGGKR 397
APRVGGKR
Sbjct: 148 APRVGGKR 155
>sp|Q8BP67|RL24_MOUSE 60S ribosomal protein L24
sp|P83732|RL24_RAT 60S ribosomal protein L24 (L30)
sp|Q862I1|RL24_BOVIN 60S ribosomal protein L24 (Ribosomal protein L30)
sp|Q66WF5|RL24_FELCA 60S ribosomal protein L24 (Ribosomal protein L30)
sp|P83731|RL24_HUMAN 60S ribosomal protein L24 (Ribosomal protein L30)
sp|P61122|RL24_MACFA 60S ribosomal protein L24
Length = 157
Score = 99.8 bits (247), Expect = 2e-21
Identities = 58/132 (43%), Positives = 75/132 (56%)
Frame = +2
Query: 2 KVHFFISKKAEKSFGMKRNpreISWTVLYRRKNRKGNMEDEKTKKRSKRYVKPVRAVAGV 181
KV F++ K E +F KRNPR+I+WTVLYRRK++KG E E KKR++R VK RA+ G
Sbjct: 27 KVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSE-EIQKKRTRRAVKFQRAITGA 85
Query: 182 TKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTNKQPKIVNKN 361
+ DI+ KRNQKPE R+A RE+AIR + + K
Sbjct: 86 SLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKP 145
Query: 362 PQAKAPRVGGKR 397
+ APRVGGKR
Sbjct: 146 VKVSAPRVGGKR 157
>sp|Q962T5|RL24_SPOFR 60S ribosomal protein L24
Length = 155
Score = 93.2 bits (230), Expect = 2e-19
Identities = 54/132 (40%), Positives = 73/132 (55%)
Frame = +2
Query: 2 KVHFFISKKAEKSFGMKRNpreISWTVLYRRKNRKGNMEDEKTKKRSKRYVKPVRAVAGV 181
K F++ K E + M+RNPR+++WTVLYRRK +KG E+E+TKKR++R K RA+ G
Sbjct: 27 KTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQ-EEEQTKKRTRRTQKYQRAIVGA 85
Query: 182 TKDDILMKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTNKQPKIVNKN 361
+ DI+ KRN KPE R+A R++AI+ K K
Sbjct: 86 SLSDIMAKRNMKPEVRKAQRDQAIKAAKEQKKSTKAAKKASAPAPKAKAAPKAK--AAKV 143
Query: 362 PQAKAPRVGGKR 397
Q APRVGGKR
Sbjct: 144 SQKSAPRVGGKR 155
>sp|Q6F444|RL24_PLUXY 60S ribosomal protein L24
Length = 155
Score = 91.3 bits (225), Expect = 8e-19
Identities = 53/128 (41%), Positives = 71/128 (55%)
Frame = +2
Query: 14 FISKKAEKSFGMKRNpreISWTVLYRRKNRKGNMEDEKTKKRSKRYVKPVRAVAGVTKDD 193
F++ K E + M+RNPR+++WTVLYRRK +KG E+E+ KKR++R K RA+ G + D
Sbjct: 31 FLNSKCEAAHLMRRNPRKVTWTVLYRRKFKKGQ-EEEQAKKRTRRTQKYQRAIVGASLSD 89
Query: 194 ILMKRNQKPEFRQAMREEAIRXXXXXXXXXXXXXXXXXXXXXXXXTNKQPKIVNKNPQAK 373
I+ KRN KPE R+A RE+AI+ K K Q
Sbjct: 90 IMAKRNMKPEVRKAQREQAIKQAKEQKKSTKASKKTTAPPTKGKAAPKAK--AAKVSQKA 147
Query: 374 APRVGGKR 397
APRVGGKR
Sbjct: 148 APRVGGKR 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,028,335
Number of Sequences: 369166
Number of extensions: 587688
Number of successful extensions: 1814
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1781
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2144903640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)