Planaria EST Database

DrC_01026

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01026
         (908 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P20338|RAB4A_HUMAN  Ras-related protein Rab-4A                 240   5e-63
sp|Q6PHI9|RAB4A_BRARE  Ras-related protein Rab-4A                 239   6e-63
sp|P56371|RAB4A_MOUSE  Ras-related protein Rab-4A                 238   2e-62
sp|Q68EK7|RAB4B_BRARE  Ras-related protein Rab-4B                 238   2e-62
sp|P05714|RAB4A_RAT  Ras-related protein Rab-4A                   235   1e-61
sp|P51146|RAB4B_RAT  Ras-related protein Rab-4B >gi|46577105...   231   2e-60
sp|P61018|RAB4B_HUMAN  Ras-related protein Rab-4B >gi|465776...   230   4e-60
sp|Q9GP33|RAB4A_ECHMU  Probable Ras-related protein Rab-4A        212   1e-54
sp|Q91V41|RAB14_MOUSE  Ras-related protein Rab-14                 203   5e-52
sp|P61107|RAB14_RAT  Ras-related protein Rab-14 >gi|46577643...   203   5e-52

>sp|P20338|RAB4A_HUMAN Ras-related protein Rab-4A
          Length = 213

 Score =  240 bits (612), Expect = 5e-63
 Identities = 126/227 (55%), Positives = 164/227 (72%), Gaps = 1/227 (0%)
 Frame = +1

Query: 37  MNEQYEFLFKFLIIGNAGVGKSCILHHFIEQKVKENSVHTIGVEFASKIIQVNNRTIKLQ 216
           M+E Y+FLFKFL+IGNAG GKSC+LH FIE+K K++S HTIGVEF SKII V  + +KLQ
Sbjct: 1   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 60

Query: 217 IWDTAGQERFRSVARSYYRGASGALVVYDITNRDSFNAVINWLSDAKSLAGTNLSAILVG 396
           IWDTAGQERFRSV RSYYRGA+GAL+VYDIT+R+++NA+ NWL+DA+ LA  N+  IL G
Sbjct: 61  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 120

Query: 397 NKKDLADYKASREVSYAEAEAFSKENEMQFYETSAVNGEHIDDVFIECARAVVSKWESND 576
           NKKDL    A REV++ EA  F++ENE+ F ETSA+ GE++++ F++CAR +++K ES +
Sbjct: 121 NKKDL---DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 177

Query: 577 LSDNIAQNSSSQNSGDIRKRWNRLSGSPAGGIRLSRARA-NSSNCQC 714
           L     +  S    GD   R  R   SP       RA+A N+  C C
Sbjct: 178 LDPE--RMGSGIQYGDAALRQLR---SP------RRAQAPNAQECGC 213

>sp|Q6PHI9|RAB4A_BRARE Ras-related protein Rab-4A
          Length = 213

 Score =  239 bits (611), Expect = 6e-63
 Identities = 113/181 (62%), Positives = 149/181 (82%)
 Frame = +1

Query: 37  MNEQYEFLFKFLIIGNAGVGKSCILHHFIEQKVKENSVHTIGVEFASKIIQVNNRTIKLQ 216
           M+E Y+FLFKFL+IGNAG GKSC+LH FIE++ K++S HTIGVEF SKII V N+ +KLQ
Sbjct: 1   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQ 60

Query: 217 IWDTAGQERFRSVARSYYRGASGALVVYDITNRDSFNAVINWLSDAKSLAGTNLSAILVG 396
           IWDTAGQERFRSV RSYYRGA+GAL+VYDIT+R+++NA+ NWL+DA+ LA  N+  IL G
Sbjct: 61  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 120

Query: 397 NKKDLADYKASREVSYAEAEAFSKENEMQFYETSAVNGEHIDDVFIECARAVVSKWESND 576
           NKKDL    A REV++ EA  F++ENE+ F ETSA+ GE++++ F++CAR +++K ES +
Sbjct: 121 NKKDL---DADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGE 177

Query: 577 L 579
           L
Sbjct: 178 L 178

>sp|P56371|RAB4A_MOUSE Ras-related protein Rab-4A
          Length = 213

 Score =  238 bits (606), Expect = 2e-62
 Identities = 112/181 (61%), Positives = 148/181 (81%)
 Frame = +1

Query: 37  MNEQYEFLFKFLIIGNAGVGKSCILHHFIEQKVKENSVHTIGVEFASKIIQVNNRTIKLQ 216
           M+E Y+FLFKFL+IGNAG GKSC+LH FIE+K K++S HTIG+EF SKII V  + +KLQ
Sbjct: 1   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQ 60

Query: 217 IWDTAGQERFRSVARSYYRGASGALVVYDITNRDSFNAVINWLSDAKSLAGTNLSAILVG 396
           IWDTAGQERFRSV RSYYRGA+GAL+VYDIT+R+++NA+ NWL+DA+ LA  N+  IL G
Sbjct: 61  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCG 120

Query: 397 NKKDLADYKASREVSYAEAEAFSKENEMQFYETSAVNGEHIDDVFIECARAVVSKWESND 576
           NKKDL    A REV++ EA  F++ENE+ F ETSA+ GE++++ F++CAR +++K ES +
Sbjct: 121 NKKDL---DADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILNKIESGE 177

Query: 577 L 579
           L
Sbjct: 178 L 178

>sp|Q68EK7|RAB4B_BRARE Ras-related protein Rab-4B
          Length = 213

 Score =  238 bits (606), Expect = 2e-62
 Identities = 110/181 (60%), Positives = 149/181 (82%)
 Frame = +1

Query: 37  MNEQYEFLFKFLIIGNAGVGKSCILHHFIEQKVKENSVHTIGVEFASKIIQVNNRTIKLQ 216
           M+E Y+FLFKFL+IG+AG GKSC+LH FIE K K++S HTIGVEF S+++ V  +T+KLQ
Sbjct: 1   MSETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQ 60

Query: 217 IWDTAGQERFRSVARSYYRGASGALVVYDITNRDSFNAVINWLSDAKSLAGTNLSAILVG 396
           IWDTAGQERFRSV RSYYRGA+GAL+VYDIT+R+++NA+ NWL+DA++LA  N+  IL G
Sbjct: 61  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCG 120

Query: 397 NKKDLADYKASREVSYAEAEAFSKENEMQFYETSAVNGEHIDDVFIECARAVVSKWESND 576
           NKKDL    A REV++ EA  F++ENE+ F ETSA+ GE++++ F++CAR++ +K ES +
Sbjct: 121 NKKDL---DADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSIPNKIESGE 177

Query: 577 L 579
           L
Sbjct: 178 L 178

>sp|P05714|RAB4A_RAT Ras-related protein Rab-4A
          Length = 213

 Score =  235 bits (599), Expect = 1e-61
 Identities = 111/181 (61%), Positives = 146/181 (80%)
 Frame = +1

Query: 37  MNEQYEFLFKFLIIGNAGVGKSCILHHFIEQKVKENSVHTIGVEFASKIIQVNNRTIKLQ 216
           M+E Y+FLFKFL+IGNAG GKSC+LH FIE+K K++S HTIGVEF  KII V  + +KLQ
Sbjct: 1   MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGQKIINVGGKYVKLQ 60

Query: 217 IWDTAGQERFRSVARSYYRGASGALVVYDITNRDSFNAVINWLSDAKSLAGTNLSAILVG 396
           IWDTAGQERFRSV  SYYRGA+GAL+VYDIT+R+++NA+ NWL+DA+ LA  N+  IL G
Sbjct: 61  IWDTAGQERFRSVTTSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 120

Query: 397 NKKDLADYKASREVSYAEAEAFSKENEMQFYETSAVNGEHIDDVFIECARAVVSKWESND 576
           NKKDL    A REV++ EA  F++ENE+ F ETSA+ GE++++ F++CAR +++K ES +
Sbjct: 121 NKKDL---DADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILNKIESGE 177

Query: 577 L 579
           L
Sbjct: 178 L 178

>sp|P51146|RAB4B_RAT Ras-related protein Rab-4B
 sp|Q91ZR1|RAB4B_MOUSE Ras-related protein Rab-4B
          Length = 213

 Score =  231 bits (589), Expect = 2e-60
 Identities = 111/200 (55%), Positives = 152/200 (76%)
 Frame = +1

Query: 37  MNEQYEFLFKFLIIGNAGVGKSCILHHFIEQKVKENSVHTIGVEFASKIIQVNNRTIKLQ 216
           M E Y+FLFKFL+IG+AG GKSC+LH FIE K K++S HTIGVEF S+++ V  +T+KLQ
Sbjct: 1   MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQ 60

Query: 217 IWDTAGQERFRSVARSYYRGASGALVVYDITNRDSFNAVINWLSDAKSLAGTNLSAILVG 396
           IWDTAGQERFRSV RSYYRGA+GAL+VYDIT+R+++N++  WL+DA++LA  N+  IL G
Sbjct: 61  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 120

Query: 397 NKKDLADYKASREVSYAEAEAFSKENEMQFYETSAVNGEHIDDVFIECARAVVSKWESND 576
           NKKDL      REV++ EA  F++ENE+ F ETSA+ GE++++ F++CAR +++K +S +
Sbjct: 121 NKKDL---DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE 177

Query: 577 LSDNIAQNSSSQNSGDIRKR 636
           L     +  S    GDI  R
Sbjct: 178 LDPE--RMGSGIQYGDISLR 195

>sp|P61018|RAB4B_HUMAN Ras-related protein Rab-4B
 sp|P61017|RAB4B_CANFA Ras-related protein Rab-4B
          Length = 213

 Score =  230 bits (587), Expect = 4e-60
 Identities = 106/181 (58%), Positives = 146/181 (80%)
 Frame = +1

Query: 37  MNEQYEFLFKFLIIGNAGVGKSCILHHFIEQKVKENSVHTIGVEFASKIIQVNNRTIKLQ 216
           M E Y+FLFKFL+IG+AG GKSC+LH FIE K K++S HTIGVEF S+++ V  +T+KLQ
Sbjct: 1   MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQ 60

Query: 217 IWDTAGQERFRSVARSYYRGASGALVVYDITNRDSFNAVINWLSDAKSLAGTNLSAILVG 396
           IWDTAGQERFRSV RSYYRGA+GAL+VYDIT+R+++N++  WL+DA++LA  N+  IL G
Sbjct: 61  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCG 120

Query: 397 NKKDLADYKASREVSYAEAEAFSKENEMQFYETSAVNGEHIDDVFIECARAVVSKWESND 576
           NKKDL      REV++ EA  F++ENE+ F ETSA+ GE++++ F++CAR +++K +S +
Sbjct: 121 NKKDL---DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGE 177

Query: 577 L 579
           L
Sbjct: 178 L 178

>sp|Q9GP33|RAB4A_ECHMU Probable Ras-related protein Rab-4A
          Length = 223

 Score =  212 bits (539), Expect = 1e-54
 Identities = 111/226 (49%), Positives = 150/226 (66%), Gaps = 1/226 (0%)
 Frame = +1

Query: 40  NEQYEFLFKFLIIGNAGVGKSCILHHFIEQKVKENSVHTIGVEFASKIIQVNNRTIKLQI 219
           ++++++LFKFLIIGNAG GK+CIL  + E+K   N+ HTIG EF S++I V+   +K+QI
Sbjct: 3   SDRFDYLFKFLIIGNAGTGKTCILRRYTERKFFPNTQHTIGAEFGSRVISVDGTHVKIQI 62

Query: 220 WDTAGQERFRSVARSYYRGASGALVVYDITNRDSFNAVINWLSDAKSLAGTNLSAILVGN 399
           WDTAGQERFRS+ARSYY  A G L+VYDITNR SF AV  WL DA+ LA   +  ILVGN
Sbjct: 63  WDTAGQERFRSMARSYYHDAVGTLLVYDITNRTSFGAVEQWLGDARHLATPGVVVILVGN 122

Query: 400 KKDLADYKASREVSYAEAEAFSKENEMQFYETSAVNGEHIDDVFIECARAVVSKWESNDL 579
           KKDL D     +V++ EA  F++EN +QF ETSA+ GE+IDD F  C R ++SK +S +L
Sbjct: 123 KKDLRD--TDGQVTHWEANTFAQENGLQFIETSALTGENIDDAFTSCVRVLLSKVKSGEL 180

Query: 580 -SDNIAQNSSSQNSGDIRKRWNRLSGSPAGGIRLSRARANSSNCQC 714
            +D +   S+ Q+   +       S +     + S A A+S  C C
Sbjct: 181 GADRLLVGSNKQHLQAVNL---TASATSVSASQSSAATAHSDTCLC 223

>sp|Q91V41|RAB14_MOUSE Ras-related protein Rab-14
          Length = 215

 Score =  203 bits (517), Expect = 5e-52
 Identities = 101/222 (45%), Positives = 143/222 (64%)
 Frame = +1

Query: 49  YEFLFKFLIIGNAGVGKSCILHHFIEQKVKENSVHTIGVEFASKIIQVNNRTIKLQIWDT 228
           Y ++FK++IIG+ GVGKSC+LH F E+K   +  HTIGVEF ++II+V+ + IKLQIWDT
Sbjct: 8   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 67

Query: 229 AGQERFRSVARSYYRGASGALVVYDITNRDSFNAVINWLSDAKSLAGTNLSAILVGNKKD 408
           AGQERFR+V RSYYRGA+GAL+VYDIT R ++N + +WL+DA++L   N   IL+GNK  
Sbjct: 68  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNK-- 125

Query: 409 LADYKASREVSYAEAEAFSKENEMQFYETSAVNGEHIDDVFIECARAVVSKWESNDLSDN 588
            AD +A R+V+Y EA+ F++EN + F E SA  GE+++D F+E A+ +    +   L  N
Sbjct: 126 -ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLN 184

Query: 589 IAQNSSSQNSGDIRKRWNRLSGSPAGGIRLSRARANSSNCQC 714
            A++                  +P GG   S  +     C C
Sbjct: 185 AAESGVQHK-----------PSAPQGGRLTSEPQPQREGCGC 215

>sp|P61107|RAB14_RAT Ras-related protein Rab-14
 sp|P61106|RAB14_HUMAN Ras-related protein Rab-14
          Length = 215

 Score =  203 bits (517), Expect = 5e-52
 Identities = 101/222 (45%), Positives = 143/222 (64%)
 Frame = +1

Query: 49  YEFLFKFLIIGNAGVGKSCILHHFIEQKVKENSVHTIGVEFASKIIQVNNRTIKLQIWDT 228
           Y ++FK++IIG+ GVGKSC+LH F E+K   +  HTIGVEF ++II+V+ + IKLQIWDT
Sbjct: 8   YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 67

Query: 229 AGQERFRSVARSYYRGASGALVVYDITNRDSFNAVINWLSDAKSLAGTNLSAILVGNKKD 408
           AGQERFR+V RSYYRGA+GAL+VYDIT R ++N + +WL+DA++L   N   IL+GNK  
Sbjct: 68  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNK-- 125

Query: 409 LADYKASREVSYAEAEAFSKENEMQFYETSAVNGEHIDDVFIECARAVVSKWESNDLSDN 588
            AD +A R+V+Y EA+ F++EN + F E SA  GE+++D F+E A+ +    +   L  N
Sbjct: 126 -ADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLN 184

Query: 589 IAQNSSSQNSGDIRKRWNRLSGSPAGGIRLSRARANSSNCQC 714
            A++                  +P GG   S  +     C C
Sbjct: 185 AAESGVQHK-----------PSAPQGGRLTSEPQPQREGCGC 215

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,021,859
Number of Sequences: 369166
Number of extensions: 2054694
Number of successful extensions: 6820
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6417
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9222552960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01026

  1. Dr_sW_025_P03
  2. Dr_sW_025_O17
  3. Dr_sW_017_O03
  4. Dr_sW_027_H11