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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01005
         (622 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q04832|HEXP_LEIMA  DNA-binding protein HEXBP (Hexamer-bin...   141   1e-33
sp|P53849|GIS2_YEAST  Zinc-finger protein GIS2                    120   2e-27
sp|P36627|BYR3_SCHPO  Cellular nucleic acid binding protein ...   113   3e-25
sp|O42395|CNBP_CHICK  Cellular nucleic acid binding protein ...   113   4e-25
sp|P62634|CNBP_RAT  Cellular nucleic acid binding protein (C...   112   6e-25
sp|P53996|CNBP_MOUSE  Cellular nucleic acid binding protein ...   112   8e-25
sp|Q8WW36|ZCH13_HUMAN  Zinc finger CCHC domain containing pr...   100   2e-21
sp|Q966L9|GLH2_CAEEL  ATP-dependent RNA helicase glh-2 (Germ...    85   1e-16
sp|O76743|GLH4_CAEEL  ATP-dependent RNA helicase glh-4 (Germ...    78   2e-14
sp|P34689|GLH1_CAEEL  ATP-dependent RNA helicase glh-1 (Germ...    71   3e-12

>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
          Length = 271

 Score =  141 bits (356), Expect = 1e-33
 Identities = 69/183 (37%), Positives = 92/183 (50%), Gaps = 10/183 (5%)
 Frame = +3

Query: 45  LECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXX 224
           + C+ CG++GH SRDC  S + G+ A+   CY CG+ GH+SRDCP +             
Sbjct: 70  MTCFRCGEAGHMSRDCPNSAKPGA-AKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRG 128

Query: 225 XXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRN-NGPSGRGCYKCG 401
                                      CY CG +GHIS  C  G    +G   R CYKCG
Sbjct: 129 RSGAQGGYSGD--------------RTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCG 174

Query: 402 ESGHMARDCVDG-----NEKQVKCYNCNQSGHMSRECPN----GPAEKTCYKCHNTGHIA 554
           ++GH++RDC +G          KCY C +SGHMSRECP+    G  ++ CYKC   GHI+
Sbjct: 175 DAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHIS 234

Query: 555 RDC 563
           R+C
Sbjct: 235 REC 237

 Score =  138 bits (348), Expect = 1e-32
 Identities = 77/200 (38%), Positives = 88/200 (44%), Gaps = 28/200 (14%)
 Frame = +3

Query: 48  ECYNCGQSGHFSRDCTES----------KRYGSGARSG-----GCYNCGENGHISRDCPQ 182
           ECY CGQ GH SRDC  S          KR  SGA+ G      CY CG+ GHISRDCP 
Sbjct: 98  ECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPN 157

Query: 183 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSR 362
                                                    CY CG +GHIS  C  G  
Sbjct: 158 GQGGYSGAGD-----------------------------RTCYKCGDAGHISRDCPNGQG 188

Query: 363 N-NGPSGRGCYKCGESGHMARDCVDGNEK---QVKCYNCNQSGHMSRECP---------N 503
             +G   R CYKCGESGHM+R+C            CY C + GH+SRECP          
Sbjct: 189 GYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSR 248

Query: 504 GPAEKTCYKCHNTGHIARDC 563
           G  ++TCYKC   GHI+RDC
Sbjct: 249 GGGDRTCYKCGEAGHISRDC 268

 Score =  127 bits (319), Expect = 2e-29
 Identities = 63/197 (31%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
 Frame = +3

Query: 51  CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 230
           C NCG+ GH++R+C E+   G   RS  C+ CGE GH+SR+CP                 
Sbjct: 18  CRNCGKEGHYARECPEADSKGD-ERSTTCFRCGEEGHMSRECPNEARSGAAGAM------ 70

Query: 231 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 410
                                    C+ CG++GH+S  C   ++     G  CYKCG+ G
Sbjct: 71  ------------------------TCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEG 106

Query: 411 HMARDCVD--------------------GNEKQVKCYNCNQSGHMSRECPN------GPA 512
           H++RDC                      G      CY C  +GH+SR+CPN      G  
Sbjct: 107 HLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAG 166

Query: 513 EKTCYKCHNTGHIARDC 563
           ++TCYKC + GHI+RDC
Sbjct: 167 DRTCYKCGDAGHISRDC 183

 Score =  103 bits (258), Expect = 3e-22
 Identities = 53/182 (29%), Positives = 76/182 (41%), Gaps = 25/182 (13%)
 Frame = +3

Query: 93  TESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 272
           TE  +      S  C NCG+ GH +R+CP+                              
Sbjct: 4   TEDVKRPRTESSTSCRNCGKEGHYARECPE------------------------------ 33

Query: 273 XXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVD----GN 440
                      C+ CG+ GH+S  C   +R+       C++CGE+GHM+RDC +    G 
Sbjct: 34  ADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGA 93

Query: 441 EKQVKCYNCNQSGHMSRECPNG---------------------PAEKTCYKCHNTGHIAR 557
            K  +CY C Q GH+SR+CP+                        ++TCYKC + GHI+R
Sbjct: 94  AKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISR 153

Query: 558 DC 563
           DC
Sbjct: 154 DC 155

 Score = 64.3 bits (155), Expect = 2e-10
 Identities = 27/48 (56%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
 Frame = +3

Query: 51  CYNCGQSGHFSRDCTESKRYGSGARSGG---CYNCGENGHISRDCPQN 185
           CY CG+ GH SR+C E+     G+R GG   CY CGE GHISRDCP +
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271

 Score = 47.0 bits (110), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +3

Query: 441 EKQVKCYNCNQSGHMSRECPNGPAE-----KTCYKCHNTGHIARDCHDD 572
           E    C NC + GH +RECP   ++      TC++C   GH++R+C ++
Sbjct: 13  ESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNE 61

>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
          Length = 153

 Score =  120 bits (302), Expect = 2e-27
 Identities = 62/181 (34%), Positives = 82/181 (45%), Gaps = 1/181 (0%)
 Frame = +3

Query: 24  EQMSQRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXX 203
           E     RL CYNC + GH   DCT  +          CYNCGE GH+  +C         
Sbjct: 17  EDCDSERL-CYNCNKPGHVQTDCTMPRT----VEFKQCYNCGETGHVRSECT-------- 63

Query: 204 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGR 383
                                             C+NC Q+GHIS  C +  + +  S  
Sbjct: 64  -------------------------------VQRCFNCNQTGHISRECPEPKKTSRFSKV 92

Query: 384 GCYKCGESGHMARDCV-DGNEKQVKCYNCNQSGHMSRECPNGPAEKTCYKCHNTGHIARD 560
            CYKCG   HMA+DC+ +     +KCY C Q+GHMSR+C N   ++ CY C+ TGHI++D
Sbjct: 93  SCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQN---DRLCYNCNETGHISKD 149

Query: 561 C 563
           C
Sbjct: 150 C 150

 Score =  100 bits (248), Expect = 4e-21
 Identities = 48/151 (31%), Positives = 71/151 (47%)
 Frame = +3

Query: 48  ECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXX 227
           +CYNCG++GH   +CT  +          C+NC + GHISR+CP+               
Sbjct: 48  QCYNCGETGHVRSECTVQR----------CFNCNQTGHISRECPEPKKTSRFSKV----- 92

Query: 228 XXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGES 407
                                    +CY CG   H++  C    + +G SG  CY CG++
Sbjct: 93  -------------------------SCYKCGGPNHMAKDCM---KEDGISGLKCYTCGQA 124

Query: 408 GHMARDCVDGNEKQVKCYNCNQSGHMSRECP 500
           GHM+RDC    +    CYNCN++GH+S++CP
Sbjct: 125 GHMSRDC----QNDRLCYNCNETGHISKDCP 151

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 6/192 (3%)
 Frame = +3

Query: 30  MSQRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXX 209
           MSQ+   CY CG+ GH + DC +S+R         CYNC + GH+  DC           
Sbjct: 1   MSQKA--CYVCGKIGHLAEDC-DSERL--------CYNCNKPGHVQTDCTM--------- 40

Query: 210 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGC 389
                                           CYNCG++GH+ S CT          + C
Sbjct: 41  ------------------------PRTVEFKQCYNCGETGHVRSECTV---------QRC 67

Query: 390 YKCGESGHMARDCVDGNE----KQVKCYNCNQSGHMSREC--PNGPAEKTCYKCHNTGHI 551
           + C ++GH++R+C +  +     +V CY C    HM+++C   +G +   CY C   GH+
Sbjct: 68  FNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHM 127

Query: 552 ARDCHDD*F*FN 587
           +RDC +D   +N
Sbjct: 128 SRDCQNDRLCYN 139

 Score = 59.3 bits (142), Expect = 8e-09
 Identities = 24/46 (52%), Positives = 29/46 (63%)
 Frame = +3

Query: 45  LECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQ 182
           L+CY CGQ+GH SRDC   +          CYNC E GHIS+DCP+
Sbjct: 116 LKCYTCGQAGHMSRDCQNDRL---------CYNCNETGHISKDCPK 152

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 51  CYNCGQSGHFSRDCTES 101
           CYNC ++GH S+DC ++
Sbjct: 137 CYNCNETGHISKDCPKA 153

>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
          Length = 179

 Score =  113 bits (283), Expect = 3e-25
 Identities = 62/177 (35%), Positives = 79/177 (44%), Gaps = 6/177 (3%)
 Frame = +3

Query: 51  CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 230
           CYNC Q+GH + +CTE ++  +      CY CG  GH+ RDCP +               
Sbjct: 38  CYNCNQTGHKASECTEPQQEKT------CYACGTAGHLVRDCPSSPNPRQGA-------- 83

Query: 231 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYC-TQGSRNNGPSG-----RGCY 392
                                    CY CG+ GHI+  C T G ++ G  G       CY
Sbjct: 84  ------------------------ECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCY 119

Query: 393 KCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAEKTCYKCHNTGHIARDC 563
            CG  GH ARDC  G    VKCY+C + GH S EC      + CYKC+  GHIA +C
Sbjct: 120 ACGSYGHQARDCTMG----VKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172

 Score = 89.7 bits (221), Expect = 5e-18
 Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
 Frame = +3

Query: 306 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHM 485
           CYNCG++GH +  CT+GS         CY C ++GH A +C +  +++  CY C  +GH+
Sbjct: 19  CYNCGENGHQARECTKGSI--------CYNCNQTGHKASECTEPQQEKT-CYACGTAGHL 69

Query: 486 SRECPNGPAEK---TCYKCHNTGHIARDC 563
            R+CP+ P  +    CYKC   GHIARDC
Sbjct: 70  VRDCPSSPNPRQGAECYKCGRVGHIARDC 98

 Score = 89.7 bits (221), Expect = 5e-18
 Identities = 50/154 (32%), Positives = 63/154 (40%)
 Frame = +3

Query: 36  QRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXX 215
           Q+   CY CG +GH  RDC  S     GA    CY CG  GHI+RDC  N          
Sbjct: 55  QQEKTCYACGTAGHLVRDCPSSPNPRQGAE---CYKCGRVGHIARDCRTNGQQSGGRFGG 111

Query: 216 XXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYK 395
                                        NCY CG  GH +  CT G +        CY 
Sbjct: 112 HRSNM------------------------NCYACGSYGHQARDCTMGVK--------CYS 139

Query: 396 CGESGHMARDCVDGNEKQVKCYNCNQSGHMSREC 497
           CG+ GH + +C   ++ Q+ CY CNQ GH++  C
Sbjct: 140 CGKIGHRSFECQQASDGQL-CYKCNQPGHIAVNC 172

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 33/62 (53%), Positives = 39/62 (62%)
 Frame = +3

Query: 378 GRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAEKTCYKCHNTGHIAR 557
           G  CY CGE+GH AR+C  G+     CYNCNQ+GH + EC     EKTCY C   GH+ R
Sbjct: 16  GPRCYNCGENGHQARECTKGSI----CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVR 71

Query: 558 DC 563
           DC
Sbjct: 72  DC 73

>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
           9)
          Length = 172

 Score =  113 bits (282), Expect = 4e-25
 Identities = 58/186 (31%), Positives = 84/186 (45%), Gaps = 14/186 (7%)
 Frame = +3

Query: 48  ECYNCGQSGHFSRDCTESKRYGSGARSGG--------------CYNCGENGHISRDCPQN 185
           EC+ CG++GH++R+C      G G RS G              CY CGE+GH+++DC   
Sbjct: 5   ECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQ 64

Query: 186 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRN 365
                                                   CYNCG+ GHI+  C +  R 
Sbjct: 65  EDKA------------------------------------CYNCGRGGHIAKDCKEPKRE 88

Query: 366 NGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAEKTCYKCHNTG 545
                  CY CG+ GH+ARDC   +E+  KCY+C + GH+ ++C     +  CY+C  TG
Sbjct: 89  REQC---CYNCGKPGHLARDCDHADEQ--KCYSCGEFGHIQKDC----TKVKCYRCGETG 139

Query: 546 HIARDC 563
           H+A +C
Sbjct: 140 HVAINC 145

 Score =  101 bits (252), Expect = 1e-21
 Identities = 52/149 (34%), Positives = 69/149 (46%)
 Frame = +3

Query: 51  CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 230
           CYNCG+ GH ++DC E KR     R   CYNCG+ GH++RDC                  
Sbjct: 69  CYNCGRGGHIAKDCKEPKR----EREQCCYNCGKPGHLARDCDH---------------- 108

Query: 231 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 410
                                    CY+CG+ GHI   CT+           CY+CGE+G
Sbjct: 109 --------------------ADEQKCYSCGEFGHIQKDCTKVK---------CYRCGETG 139

Query: 411 HMARDCVDGNEKQVKCYNCNQSGHMSREC 497
           H+A +C   +E  V CY C +SGH++REC
Sbjct: 140 HVAINCSKTSE--VNCYRCGESGHLAREC 166

 Score = 89.7 bits (221), Expect = 5e-18
 Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
 Frame = +3

Query: 126 SGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNN 305
           S  C+ CG  GH +R+CP                                        + 
Sbjct: 3   SNECFKCGRTGHWARECPTG---------------IGRGRGMRSRGRAGFQFMSSSLPDI 47

Query: 306 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVD-GNEKQVKCYNCNQSGH 482
           CY CG+SGH++  C      +    + CY CG  GH+A+DC +   E++  CYNC + GH
Sbjct: 48  CYRCGESGHLAKDC------DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 101

Query: 483 MSRECPNGPAEKTCYKCHNTGHIARDC 563
           ++R+C +   +K CY C   GHI +DC
Sbjct: 102 LARDCDHADEQK-CYSCGEFGHIQKDC 127

 Score = 80.1 bits (196), Expect = 4e-15
 Identities = 44/138 (31%), Positives = 59/138 (42%)
 Frame = +3

Query: 15  DFFEQMSQRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXX 194
           D  E   +R   CYNCG+ GH +RDC         A    CY+CGE GHI +DC +    
Sbjct: 81  DCKEPKREREQCCYNCGKPGHLARDCDH-------ADEQKCYSCGEFGHIQKDCTK---- 129

Query: 195 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGP 374
                                                CY CG++GH++  C++ S  N  
Sbjct: 130 -----------------------------------VKCYRCGETGHVAINCSKTSEVN-- 152

Query: 375 SGRGCYKCGESGHMARDC 428
               CY+CGESGH+AR+C
Sbjct: 153 ----CYRCGESGHLAREC 166

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 19/84 (22%)
 Frame = +3

Query: 375 SGRGCYKCGESGHMARDCVDG-------------------NEKQVKCYNCNQSGHMSREC 497
           S   C+KCG +GH AR+C  G                   +     CY C +SGH++++C
Sbjct: 2   SSNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC 61

Query: 498 PNGPAEKTCYKCHNTGHIARDCHD 569
            +   +K CY C   GHIA+DC +
Sbjct: 62  -DLQEDKACYNCGRGGHIAKDCKE 84

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 45  LECYNCGQSGHFSRDCT 95
           + CY CG+SGH +R+CT
Sbjct: 151 VNCYRCGESGHLARECT 167

>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
           9)
 sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
           9)
          Length = 177

 Score =  112 bits (281), Expect = 6e-25
 Identities = 59/192 (30%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
 Frame = +3

Query: 48  ECYNCGQSGHFSRDCTESKRYGSGARSGG--------------------CYNCGENGHIS 167
           EC+ CG+SGH++R+C      G G RS G                    CY CGE+GH++
Sbjct: 5   ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64

Query: 168 RDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYC 347
           +DC                                         + CYNCG+ GHI+  C
Sbjct: 65  KDCDLQE-------------------------------------DACYNCGRGGHIAKDC 87

Query: 348 TQGSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAEKTCY 527
            +  R        CY CG+ GH+ARDC   +E+  KCY+C + GH+ ++C     +  CY
Sbjct: 88  KEPKREREQC---CYNCGKPGHLARDCDHADEQ--KCYSCGEFGHIQKDC----TKVKCY 138

Query: 528 KCHNTGHIARDC 563
           +C  TGH+A +C
Sbjct: 139 RCGETGHVAINC 150

 Score =  101 bits (252), Expect = 1e-21
 Identities = 52/149 (34%), Positives = 69/149 (46%)
 Frame = +3

Query: 51  CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 230
           CYNCG+ GH ++DC E KR     R   CYNCG+ GH++RDC                  
Sbjct: 74  CYNCGRGGHIAKDCKEPKR----EREQCCYNCGKPGHLARDCDH---------------- 113

Query: 231 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 410
                                    CY+CG+ GHI   CT+           CY+CGE+G
Sbjct: 114 --------------------ADEQKCYSCGEFGHIQKDCTKVK---------CYRCGETG 144

Query: 411 HMARDCVDGNEKQVKCYNCNQSGHMSREC 497
           H+A +C   +E  V CY C +SGH++REC
Sbjct: 145 HVAINCSKTSE--VNCYRCGESGHLAREC 171

 Score = 89.7 bits (221), Expect = 5e-18
 Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 23/111 (20%)
 Frame = +3

Query: 300 NNCYNCGQSGHISSYC-TQGSRNNGPSGRG--------------------CYKCGESGHM 416
           N C+ CG+SGH +  C T G R  G   RG                    CY+CGESGH+
Sbjct: 4   NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63

Query: 417 ARDCVDGNEKQVKCYNCNQSGHMSREC--PNGPAEKTCYKCHNTGHIARDC 563
           A+DC   + ++  CYNC + GH++++C  P    E+ CY C   GH+ARDC
Sbjct: 64  AKDC---DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 1/147 (0%)
 Frame = +3

Query: 126 SGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNN 305
           S  C+ CG +GH +R+CP                                        + 
Sbjct: 3   SNECFKCGRSGHWARECPTG---------GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI 53

Query: 306 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVD-GNEKQVKCYNCNQSGH 482
           CY CG+SGH++  C             CY CG  GH+A+DC +   E++  CYNC + GH
Sbjct: 54  CYRCGESGHLAKDCDL-------QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 106

Query: 483 MSRECPNGPAEKTCYKCHNTGHIARDC 563
           ++R+C +   +K CY C   GHI +DC
Sbjct: 107 LARDCDHADEQK-CYSCGEFGHIQKDC 132

 Score = 80.1 bits (196), Expect = 4e-15
 Identities = 44/138 (31%), Positives = 59/138 (42%)
 Frame = +3

Query: 15  DFFEQMSQRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXX 194
           D  E   +R   CYNCG+ GH +RDC         A    CY+CGE GHI +DC +    
Sbjct: 86  DCKEPKREREQCCYNCGKPGHLARDCDH-------ADEQKCYSCGEFGHIQKDCTK---- 134

Query: 195 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGP 374
                                                CY CG++GH++  C++ S  N  
Sbjct: 135 -----------------------------------VKCYRCGETGHVAINCSKTSEVN-- 157

Query: 375 SGRGCYKCGESGHMARDC 428
               CY+CGESGH+AR+C
Sbjct: 158 ----CYRCGESGHLAREC 171

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 25/90 (27%)
 Frame = +3

Query: 375 SGRGCYKCGESGHMARDCVDGNEK-------------------------QVKCYNCNQSG 479
           S   C+KCG SGH AR+C  G  +                            CY C +SG
Sbjct: 2   SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61

Query: 480 HMSRECPNGPAEKTCYKCHNTGHIARDCHD 569
           H++++C     E  CY C   GHIA+DC +
Sbjct: 62  HLAKDC--DLQEDACYNCGRGGHIAKDCKE 89

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 45  LECYNCGQSGHFSRDCT 95
           + CY CG+SGH +R+CT
Sbjct: 156 VNCYRCGESGHLARECT 172

>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
           9)
          Length = 178

 Score =  112 bits (280), Expect = 8e-25
 Identities = 59/192 (30%), Positives = 84/192 (43%), Gaps = 20/192 (10%)
 Frame = +3

Query: 48  ECYNCGQSGHFSRDCTESKRYGSGARSGG--------------------CYNCGENGHIS 167
           EC+ CG+SGH++R+C      G G RS G                    CY CGE+GH++
Sbjct: 5   ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64

Query: 168 RDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYC 347
           +DC                                           CYNCG+ GHI+  C
Sbjct: 65  KDCDLQEDEA------------------------------------CYNCGRGGHIAKDC 88

Query: 348 TQGSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAEKTCY 527
            +  R        CY CG+ GH+ARDC   +E+  KCY+C + GH+ ++C     +  CY
Sbjct: 89  KEPKREREQC---CYNCGKPGHLARDCDHADEQ--KCYSCGEFGHIQKDC----TKVKCY 139

Query: 528 KCHNTGHIARDC 563
           +C  TGH+A +C
Sbjct: 140 RCGETGHVAINC 151

 Score =  101 bits (252), Expect = 1e-21
 Identities = 52/149 (34%), Positives = 69/149 (46%)
 Frame = +3

Query: 51  CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 230
           CYNCG+ GH ++DC E KR     R   CYNCG+ GH++RDC                  
Sbjct: 75  CYNCGRGGHIAKDCKEPKR----EREQCCYNCGKPGHLARDCDH---------------- 114

Query: 231 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 410
                                    CY+CG+ GHI   CT+           CY+CGE+G
Sbjct: 115 --------------------ADEQKCYSCGEFGHIQKDCTKVK---------CYRCGETG 145

Query: 411 HMARDCVDGNEKQVKCYNCNQSGHMSREC 497
           H+A +C   +E  V CY C +SGH++REC
Sbjct: 146 HVAINCSKTSE--VNCYRCGESGHLAREC 172

 Score = 90.1 bits (222), Expect = 4e-18
 Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 23/111 (20%)
 Frame = +3

Query: 300 NNCYNCGQSGHISSYC-TQGSRNNGPSGRG--------------------CYKCGESGHM 416
           N C+ CG+SGH +  C T G R  G   RG                    CY+CGESGH+
Sbjct: 4   NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63

Query: 417 ARDCVDGNEKQVKCYNCNQSGHMSREC--PNGPAEKTCYKCHNTGHIARDC 563
           A+DC D  E +  CYNC + GH++++C  P    E+ CY C   GH+ARDC
Sbjct: 64  AKDC-DLQEDEA-CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112

 Score = 89.4 bits (220), Expect = 7e-18
 Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
 Frame = +3

Query: 126 SGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNN 305
           S  C+ CG +GH +R+CP                                        + 
Sbjct: 3   SNECFKCGRSGHWARECPTG---------GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI 53

Query: 306 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVD-GNEKQVKCYNCNQSGH 482
           CY CG+SGH++  C      +      CY CG  GH+A+DC +   E++  CYNC + GH
Sbjct: 54  CYRCGESGHLAKDC------DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 107

Query: 483 MSRECPNGPAEKTCYKCHNTGHIARDC 563
           ++R+C +   +K CY C   GHI +DC
Sbjct: 108 LARDCDHADEQK-CYSCGEFGHIQKDC 133

 Score = 80.1 bits (196), Expect = 4e-15
 Identities = 44/138 (31%), Positives = 59/138 (42%)
 Frame = +3

Query: 15  DFFEQMSQRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXX 194
           D  E   +R   CYNCG+ GH +RDC         A    CY+CGE GHI +DC +    
Sbjct: 87  DCKEPKREREQCCYNCGKPGHLARDCDH-------ADEQKCYSCGEFGHIQKDCTK---- 135

Query: 195 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGP 374
                                                CY CG++GH++  C++ S  N  
Sbjct: 136 -----------------------------------VKCYRCGETGHVAINCSKTSEVN-- 158

Query: 375 SGRGCYKCGESGHMARDC 428
               CY+CGESGH+AR+C
Sbjct: 159 ----CYRCGESGHLAREC 172

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 25/90 (27%)
 Frame = +3

Query: 375 SGRGCYKCGESGHMARDCVDGNEK-------------------------QVKCYNCNQSG 479
           S   C+KCG SGH AR+C  G  +                            CY C +SG
Sbjct: 2   SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61

Query: 480 HMSRECPNGPAEKTCYKCHNTGHIARDCHD 569
           H++++C +   ++ CY C   GHIA+DC +
Sbjct: 62  HLAKDC-DLQEDEACYNCGRGGHIAKDCKE 90

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 45  LECYNCGQSGHFSRDCT 95
           + CY CG+SGH +R+CT
Sbjct: 157 VNCYRCGESGHLARECT 173

>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
          Length = 166

 Score =  100 bits (250), Expect = 2e-21
 Identities = 58/186 (31%), Positives = 81/186 (43%), Gaps = 16/186 (8%)
 Frame = +3

Query: 54  YNCGQSGHFSRDCTESKRYGSGARSGG----------------CYNCGENGHISRDCPQN 185
           + CG SGH++R C    R G+G R GG                CY CGE+G  +++C   
Sbjct: 7   FACGHSGHWARGCP---RGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC--- 60

Query: 186 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRN 365
                                                 N CYNCG+SGHI+  C    R 
Sbjct: 61  ----------------------------------VLLGNICYNCGRSGHIAKDCKDPKRE 86

Query: 366 NGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAEKTCYKCHNTG 545
                + CY CG  GH+ARDC    +K+ KCY+C + GH+ ++C    A+  CY+C   G
Sbjct: 87  R---RQHCYTCGRLGHLARDC--DRQKEQKCYSCGKLGHIQKDC----AQVKCYRCGEIG 137

Query: 546 HIARDC 563
           H+A +C
Sbjct: 138 HVAINC 143

 Score = 76.6 bits (187), Expect = 5e-14
 Identities = 41/149 (27%), Positives = 59/149 (39%)
 Frame = +3

Query: 51  CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 230
           CY CG+SG  +++C              CYNCG +GHI++DC                  
Sbjct: 47  CYCCGESGRNAKNCV--------LLGNICYNCGRSGHIAKDCKD---------------- 82

Query: 231 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 410
                                   +CY CG+ GH++  C +           CY CG+ G
Sbjct: 83  -----------------PKRERRQHCYTCGRLGHLARDCDRQKEQK------CYSCGKLG 119

Query: 411 HMARDCVDGNEKQVKCYNCNQSGHMSREC 497
           H+ +DC      QVKCY C + GH++  C
Sbjct: 120 HIQKDCA-----QVKCYRCGEIGHVAINC 143

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 29/106 (27%), Positives = 40/106 (37%)
 Frame = +3

Query: 36  QRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXX 215
           +RR  CY CG+ GH +RDC   K          CY+CG+ GHI +DC Q           
Sbjct: 86  ERRQHCYTCGRLGHLARDCDRQKEQ-------KCYSCGKLGHIQKDCAQ----------- 127

Query: 216 XXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQ 353
                                         CY CG+ GH++  C++
Sbjct: 128 ----------------------------VKCYRCGEIGHVAINCSK 145

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
 Frame = +3

Query: 309 YNCGQSGHISSYCTQGS---RNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSG 479
           + CG SGH +  C +G    R  G  GRG  +CG +                CY C +SG
Sbjct: 7   FACGHSGHWARGCPRGGAGGRRGGGHGRGS-QCGST-----------TLSYTCYCCGESG 54

Query: 480 HMSRECPNGPAEKTCYKCHNTGHIARDCHD 569
             ++ C        CY C  +GHIA+DC D
Sbjct: 55  RNAKNCVL--LGNICYNCGRSGHIAKDCKD 82

>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
          Length = 974

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 57/209 (27%), Positives = 75/209 (35%), Gaps = 38/209 (18%)
 Frame = +3

Query: 51  CYNCGQSGHFSRDCTESK--RYGSGARSGGC--YNCGENGHISRDCPQNXXXXXXXXXXX 218
           CYNC Q GH SRDC E +  R G    +GG   +  G  G    D               
Sbjct: 284 CYNCQQPGHNSRDCPEERKpreGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGES 343

Query: 219 XXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKC 398
                                      NNC+NC Q GH S+ C +  +   P  R CY C
Sbjct: 344 GFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP--RVCYNC 401

Query: 399 GESGHMARDCVD-------------------------------GNEKQ---VKCYNCNQS 476
            + GH +RDC +                               GN ++   +KC+NC   
Sbjct: 402 QQPGHNSRDCPEERKpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGE 461

Query: 477 GHMSRECPNGPAEKTCYKCHNTGHIARDC 563
           GH S ECP  P  + C+ C   GH + +C
Sbjct: 462 GHRSAECPEPP--RGCFNCGEQGHRSNEC 488

 Score = 82.8 bits (203), Expect = 6e-16
 Identities = 56/190 (29%), Positives = 72/190 (37%), Gaps = 7/190 (3%)
 Frame = +3

Query: 24  EQMSQRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXX 203
           +   +R   C+NC Q GH S DC E K+         CYNC + GH SRDCP+       
Sbjct: 250 QDRGERNNNCFNCQQPGHRSNDCPEPKKE---REPRVCYNCQQPGHNSRDCPEERKpreG 306

Query: 204 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQ-GSRNNGPSG 380
                                               N G +G  S      GS NNG SG
Sbjct: 307 RNGFTGGSSGFGGG----------------------NGGGTGFDSGLTNGFGSGNNGESG 344

Query: 381 RGCYKCGESGH---MARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAE---KTCYKCHNT 542
            G    G + +         D  E+   C+NC Q GH S +CP    E   + CY C   
Sbjct: 345 FGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQP 404

Query: 543 GHIARDCHDD 572
           GH +RDC ++
Sbjct: 405 GHNSRDCPEE 414

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +3

Query: 354 GSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAE---KTC 524
           G  N+G SG G               D  E+   C+NC Q GH S +CP    E   + C
Sbjct: 225 GGGNSGGSGFGSGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVC 284

Query: 525 YKCHNTGHIARDCHDD 572
           Y C   GH +RDC ++
Sbjct: 285 YNCQQPGHNSRDCPEE 300

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = +3

Query: 45  LECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCP 179
           ++C+NC   GH S +C E  R        GC+NCGE GH S +CP
Sbjct: 453 MKCFNCKGEGHRSAECPEPPR--------GCFNCGEQGHRSNECP 489

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 51  CYNCGQSGHFSRDCTESKRYGSGARSGG 134
           C+NCG+ GH S +C    +   GA   G
Sbjct: 475 CFNCGEQGHRSNECPNPAKpreGAEGEG 502

>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germline helicase 4)
          Length = 1156

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 48/174 (27%), Positives = 62/174 (35%), Gaps = 5/174 (2%)
 Frame = +3

Query: 57  NCGQSGHFSRDCTESK-RYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXXX 233
           N G    F       +  +  G R  GC+NCGE GHIS++C +                 
Sbjct: 545 NFGNGNTFGEPSDNQRGNWDGGERPRGCHNCGEEGHISKECDKPKVPRFP---------- 594

Query: 234 XXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGH 413
                                   C NC Q GH +S C Q     GP    C  CG  GH
Sbjct: 595 ------------------------CRNCEQLGHFASDCDQPRVPRGP----CRNCGIEGH 626

Query: 414 MARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAE----KTCYKCHNTGHIARDC 563
            A DC      +  C NC Q GH +++C N        + C +C   GH   +C
Sbjct: 627 FAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 45/163 (27%), Positives = 59/163 (36%), Gaps = 3/163 (1%)
 Frame = +3

Query: 36  QRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXX 215
           +R   C+NCG+ GH S++C + K          C NC + GH + DC Q           
Sbjct: 567 ERPRGCHNCGEEGHISKECDKPK-----VPRFPCRNCEQLGHFASDCDQ----------- 610

Query: 216 XXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYK 395
                                         C NCG  GH +  C Q     GP    C  
Sbjct: 611 -----------------------PRVPRGPCRNCGIEGHFAVDCDQPKVPRGP----CRN 643

Query: 396 CGESGHMARDCVDGN---EKQVKCYNCNQSGHMSRECPNGPAE 515
           CG+ GH A+DC +     E    C  C + GH   ECP  P +
Sbjct: 644 CGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPKD 686

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
 Frame = +3

Query: 306 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHM 485
           C+NCG+ GHIS  C +      P    C  C + GH A DC      +  C NC   GH 
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFP----CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHF 627

Query: 486 SREC-----PNGPAEKTCYKCHNTGHIARDCHDD 572
           + +C     P GP    C  C   GH A+DC ++
Sbjct: 628 AVDCDQPKVPRGP----CRNCGQEGHFAKDCQNE 657

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
 Frame = +3

Query: 309 YNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMS 488
           +N G     S++   G  ++   G G    GE     R   DG E+   C+NC + GH+S
Sbjct: 524 FNTGGGAVKSAFGAAGFGSSSNFGNG-NTFGEPSDNQRGNWDGGERPRGCHNCGEEGHIS 582

Query: 489 RECPNGPAEK-TCYKCHNTGHIARDC 563
           +EC      +  C  C   GH A DC
Sbjct: 583 KECDKPKVPRFPCRNCEQLGHFASDC 608

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +3

Query: 24  EQMSQRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCP 179
           +Q    R  C NCGQ GHF++DC   +          C  C E GH   +CP
Sbjct: 632 DQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEP--CRRCAEEGHWGYECP 681

>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germline helicase 1)
          Length = 763

 Score = 70.9 bits (172), Expect = 3e-12
 Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 36/124 (29%)
 Frame = +3

Query: 300 NNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVD--------------- 434
           NNC+NC Q GH SS C +  +   P  R CY C + GH +R+C +               
Sbjct: 158 NNCFNCQQPGHRSSDCPEPRKEREP--RVCYNCQQPGHTSRECTEERKpreGRTGGFGGG 215

Query: 435 -------------------GNEKQ--VKCYNCNQSGHMSRECPNGPAEKTCYKCHNTGHI 551
                              G E++  +KC+NC   GH S ECP  P  + C+ C   GH 
Sbjct: 216 AGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHR 273

Query: 552 ARDC 563
           + +C
Sbjct: 274 SNEC 277

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 42/164 (25%), Positives = 55/164 (33%), Gaps = 32/164 (19%)
 Frame = +3

Query: 108 YGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 287
           +G G R+  C+NC + GH S DCP+                                   
Sbjct: 151 HGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRV-------------------------- 184

Query: 288 XXXXNNCYNCGQSGHISSYCTQGSR--------------------NNGPSGRG------- 386
                 CYNC Q GH S  CT+  +                    N+G  G G       
Sbjct: 185 ------CYNCQQPGHTSRECTEERKpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEE 238

Query: 387 -----CYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPN 503
                C+ C   GH + +C    E    C+NC + GH S ECPN
Sbjct: 239 RGPMKCFNCKGEGHRSAECP---EPPRGCFNCGEQGHRSNECPN 279

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 36/133 (27%), Positives = 49/133 (36%), Gaps = 2/133 (1%)
 Frame = +3

Query: 36  QRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXX 215
           +R   C+NC Q GH S DC E ++         CYNC + GH SR+C +           
Sbjct: 155 ERNNNCFNCQQPGHRSSDCPEPRK---EREPRVCYNCQQPGHTSRECTEERKpreGRTGG 211

Query: 216 XXXXXXXXXXXXXXXXXXXXXXXXXXXXN--NCYNCGQSGHISSYCTQGSRNNGPSGRGC 389
                                           C+NC   GH S+ C +         RGC
Sbjct: 212 FGGGAGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPE-------PPRGC 264

Query: 390 YKCGESGHMARDC 428
           + CGE GH + +C
Sbjct: 265 FNCGEQGHRSNEC 277

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +3

Query: 318 GQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSREC 497
           G SG      T      G  G G    GE GH       G E+   C+NC Q GH S +C
Sbjct: 120 GGSGGFGGSATGFGSGGGSFGGGNSGFGEGGH------GGGERNNNCFNCQQPGHRSSDC 173

Query: 498 PNGPAE---KTCYKCHNTGHIARDCHDD 572
           P    E   + CY C   GH +R+C ++
Sbjct: 174 PEPRKEREPRVCYNCQQPGHTSRECTEE 201

 Score = 49.3 bits (116), Expect = 8e-06
 Identities = 20/45 (44%), Positives = 26/45 (57%)
 Frame = +3

Query: 45  LECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCP 179
           ++C+NC   GH S +C E  R        GC+NCGE GH S +CP
Sbjct: 242 MKCFNCKGEGHRSAECPEPPR--------GCFNCGEQGHRSNECP 278

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 51  CYNCGQSGHFSRDCTESKRYGSGARSGG 134
           C+NCG+ GH S +C    +   G    G
Sbjct: 264 CFNCGEQGHRSNECPNPAKpreGVEGEG 291

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,805,915
Number of Sequences: 369166
Number of extensions: 1307558
Number of successful extensions: 8228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7274
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4877307000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_028_A17
2. Dr_sW_008_A22
3. Dr_sW_025_G09
4. Dr_sW_025_K15