Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_A17
(265 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-bin... 58 6e-09
sp|P27484|GRP2_NICSY Glycine-rich protein 2 58 8e-09
sp|Q38896|GRP2B_ARATH Glycine-rich protein 2b (AtGRP2b) 55 5e-08
sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein ... 53 2e-07
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 53 2e-07
sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein ... 53 2e-07
sp|P53849|GIS2_YEAST Zinc-finger protein GIS2 52 3e-07
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 52 4e-07
sp|P05888|GAG_HV1MN Gag polyprotein (Pr55Gag) [Contains: Ma... 52 5e-07
sp|P05961|POL_HV1MN Gag-Pol polyprotein (Pr160Gag-Pol) [Con... 52 5e-07
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
Length = 271
Score = 58.2 bits (139), Expect = 6e-09
Identities = 24/42 (57%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRN-NGPSGRGCYKCGESGHMARDC 256
CY CG +GHIS C G +G R CYKCGESGHM+R+C
Sbjct: 170 CYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSREC 211
Score = 57.8 bits (138), Expect = 8e-09
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRN-NGPSGRGCYKCGESGHMARDCVDG 265
CY CG +GHIS C G +G R CYKCG++GH++RDC +G
Sbjct: 142 CYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNG 186
Score = 55.1 bits (131), Expect = 5e-08
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 6/47 (12%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQ------GSRNNGPSGRGCYKCGESGHMARDC 256
CY CG+ GHIS C + GSR G R CYKCGE+GH++RDC
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGD--RTCYKCGEAGHISRDC 268
Score = 54.3 bits (129), Expect = 8e-08
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
C+ CG+ GH+S C +R+ C++CGE+GHM+RDC
Sbjct: 45 CFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDC 85
Score = 54.3 bits (129), Expect = 8e-08
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
C+ CG++GH+S C ++ G CYKCG+ GH++RDC
Sbjct: 72 CFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDC 112
Score = 53.5 bits (127), Expect = 1e-07
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CY CG+SGH+S C + G R CYKCG+ GH++R+C
Sbjct: 198 CYKCGESGHMSRECPSAG-STGSGDRACYKCGKPGHISREC 237
Score = 52.0 bits (123), Expect = 4e-07
Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 16/60 (26%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQ---GSRNN-----GPSG--------RGCYKCGESGHMARDCVDG 265
CY CGQ GH+S C GSR G SG R CYKCG++GH++RDC +G
Sbjct: 99 CYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNG 158
Score = 48.5 bits (114), Expect = 5e-06
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 131 NCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
+C NCG+ GH + C + C++CGE GHM+R+C
Sbjct: 17 SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSREC 58
>sp|P27484|GRP2_NICSY Glycine-rich protein 2
Length = 214
Score = 57.8 bits (138), Expect = 8e-09
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 10/56 (17%)
Frame = +2
Query: 128 NNCYNCGQSGHISSYCTQ----------GSRNNGPSGRGCYKCGESGHMARDCVDG 265
+ C+ CG+SGH + C+Q G G G GCYKCGE GH AR+C G
Sbjct: 157 SGCFKCGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGGCYKCGEDGHFARECTSG 212
Score = 39.3 bits (90), Expect = 0.003
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +2
Query: 206 GRGCYKCGESGHMARDC 256
G GC+KCGESGH ARDC
Sbjct: 156 GSGCFKCGESGHFARDC 172
Score = 31.6 bits (70), Expect = 0.58
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSR 190
CY CG+ GH + CT G R
Sbjct: 196 CYKCGEDGHFARECTSGGR 214
>sp|Q38896|GRP2B_ARATH Glycine-rich protein 2b (AtGRP2b)
Length = 201
Score = 55.1 bits (131), Expect = 5e-08
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 17/63 (26%)
Frame = +2
Query: 128 NNCYNCGQSGHISSYCTQGSRN-----------------NGPSGRGCYKCGESGHMARDC 256
N+C+ CG+ GH++ C+QG G G CY CGESGH ARDC
Sbjct: 136 NSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Query: 257 VDG 265
G
Sbjct: 196 TSG 198
Score = 40.4 bits (93), Expect = 0.001
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 182 GSRNNGPSGRGCYKCGESGHMARDCVDG 265
G R G C+KCGE GHMAR+C G
Sbjct: 127 GGRGGGGGDNSCFKCGEPGHMARECSQG 154
>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 178
Score = 52.8 bits (125), Expect = 2e-07
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CY CG++GH++ C++ S N CY+CGESGH+AR+C
Sbjct: 138 CYRCGETGHVAINCSKTSEVN------CYRCGESGHLAREC 172
Score = 50.8 bits (120), Expect = 9e-07
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 21/64 (32%)
Frame = +2
Query: 128 NNCYNCGQSGHISSYC-TQGSRNNGPSGRG--------------------CYKCGESGHM 244
N C+ CG+SGH + C T G R G RG CY+CGESGH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 245 ARDC 256
A+DC
Sbjct: 64 AKDC 67
Score = 50.8 bits (120), Expect = 9e-07
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CYNCG+ GHI+ C + R + CY CG+ GH+ARDC
Sbjct: 75 CYNCGRGGHIAKDCKEPKRER---EQCCYNCGKPGHLARDC 112
Score = 45.4 bits (106), Expect = 4e-05
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CYNCG+ GH++ C CY CGE GH+ +DC
Sbjct: 99 CYNCGKPGHLARDCDHADEQK------CYSCGEFGHIQKDC 133
Score = 33.1 bits (74), Expect = 0.20
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 203 SGRGCYKCGESGHMARDCVDG 265
S C+KCG SGH AR+C G
Sbjct: 2 SSNECFKCGRSGHWARECPTG 22
Score = 32.0 bits (71), Expect = 0.45
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 131 NCYNCGQSGHISSYCT 178
NCY CG+SGH++ CT
Sbjct: 158 NCYRCGESGHLARECT 173
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 52.8 bits (125), Expect = 2e-07
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CY CG++GH++ C++ S N CY+CGESGH+AR+C
Sbjct: 137 CYRCGETGHVAINCSKTSEVN------CYRCGESGHLAREC 171
Score = 50.8 bits (120), Expect = 9e-07
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 21/64 (32%)
Frame = +2
Query: 128 NNCYNCGQSGHISSYC-TQGSRNNGPSGRG--------------------CYKCGESGHM 244
N C+ CG+SGH + C T G R G RG CY+CGESGH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 245 ARDC 256
A+DC
Sbjct: 64 AKDC 67
Score = 50.8 bits (120), Expect = 9e-07
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CYNCG+ GHI+ C + R + CY CG+ GH+ARDC
Sbjct: 74 CYNCGRGGHIAKDCKEPKRER---EQCCYNCGKPGHLARDC 111
Score = 45.4 bits (106), Expect = 4e-05
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CYNCG+ GH++ C CY CGE GH+ +DC
Sbjct: 98 CYNCGKPGHLARDCDHADEQK------CYSCGEFGHIQKDC 132
Score = 33.1 bits (74), Expect = 0.20
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 203 SGRGCYKCGESGHMARDCVDG 265
S C+KCG SGH AR+C G
Sbjct: 2 SSNECFKCGRSGHWARECPTG 22
Score = 32.0 bits (71), Expect = 0.45
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 131 NCYNCGQSGHISSYCT 178
NCY CG+SGH++ CT
Sbjct: 157 NCYRCGESGHLARECT 172
>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 172
Score = 52.8 bits (125), Expect = 2e-07
Identities = 20/41 (48%), Positives = 29/41 (70%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CY CG++GH++ C++ S N CY+CGESGH+AR+C
Sbjct: 132 CYRCGETGHVAINCSKTSEVN------CYRCGESGHLAREC 166
Score = 50.8 bits (120), Expect = 9e-07
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CYNCG+ GHI+ C + R + CY CG+ GH+ARDC
Sbjct: 69 CYNCGRGGHIAKDCKEPKRER---EQCCYNCGKPGHLARDC 106
Score = 50.1 bits (118), Expect = 2e-06
Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 15/58 (25%)
Frame = +2
Query: 128 NNCYNCGQSGHISSYCTQG-SRNNGPSGRG--------------CYKCGESGHMARDC 256
N C+ CG++GH + C G R G RG CY+CGESGH+A+DC
Sbjct: 4 NECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC 61
Score = 45.8 bits (107), Expect = 3e-05
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CY CG+SGH++ C + CY CG GH+A+DC
Sbjct: 48 CYRCGESGHLAKDCDL------QEDKACYNCGRGGHIAKDC 82
Score = 45.4 bits (106), Expect = 4e-05
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CYNCG+ GH++ C CY CGE GH+ +DC
Sbjct: 93 CYNCGKPGHLARDCDHADEQK------CYSCGEFGHIQKDC 127
Score = 32.0 bits (71), Expect = 0.45
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 203 SGRGCYKCGESGHMARDCVDG 265
S C+KCG +GH AR+C G
Sbjct: 2 SSNECFKCGRTGHWARECPTG 22
Score = 32.0 bits (71), Expect = 0.45
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 131 NCYNCGQSGHISSYCT 178
NCY CG+SGH++ CT
Sbjct: 152 NCYRCGESGHLARECT 167
>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
Length = 153
Score = 52.4 bits (124), Expect = 3e-07
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCV 259
C+NC Q+GHIS C + + + S CYKCG HMA+DC+
Sbjct: 67 CFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCM 108
Score = 48.9 bits (115), Expect = 4e-06
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +2
Query: 131 NCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
+CY CG H++ C + +G SG CY CG++GHM+RDC
Sbjct: 93 SCYKCGGPNHMAKDCM---KEDGISGLKCYTCGQAGHMSRDC 131
Score = 45.4 bits (106), Expect = 4e-05
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CY CGQ+GH+S C + R CY C E+GH+++DC
Sbjct: 118 CYTCGQAGHMSRDCQ--------NDRLCYNCNETGHISKDC 150
Score = 42.4 bits (98), Expect = 3e-04
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CYNC + GH+ + CT + CY CGE+GH+ +C
Sbjct: 25 CYNCNKPGHVQTDCTM---PRTVEFKQCYNCGETGHVRSEC 62
Score = 37.7 bits (86), Expect = 0.008
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CY CG+ GH++ C S R CY C + GH+ DC
Sbjct: 6 CYVCGKIGHLAEDCD--------SERLCYNCNKPGHVQTDC 38
Score = 30.4 bits (67), Expect = 1.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 203 SGRGCYKCGESGHMARDC 256
S + CY CG+ GH+A DC
Sbjct: 2 SQKACYVCGKIGHLAEDC 19
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 52.0 bits (123), Expect = 4e-07
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = +2
Query: 128 NNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
N CYNCG+SGHI+ C R + CY CG GH+ARDC
Sbjct: 65 NICYNCGRSGHIAKDCKDPKRER---RQHCYTCGRLGHLARDC 104
Score = 43.1 bits (100), Expect = 2e-04
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVD 262
CY CG+SG + C G CY CG SGH+A+DC D
Sbjct: 47 CYCCGESGRNAKNCVL-------LGNICYNCGRSGHIAKDCKD 82
Score = 42.7 bits (99), Expect = 3e-04
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 256
CY+CG+ GHI C Q CY+CGE GH+A +C
Sbjct: 112 CYSCGKLGHIQKDCAQVK---------CYRCGEIGHVAINC 143
Score = 40.4 bits (93), Expect = 0.001
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 14/55 (25%)
Frame = +2
Query: 137 YNCGQSGHISSYCTQ---GSRNNGPSGRG-----------CYKCGESGHMARDCV 259
+ CG SGH + C + G R G GRG CY CGESG A++CV
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCV 61
>sp|P05888|GAG_HV1MN Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17 (MA);
Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid
protein p7 (NC); Spacer peptide p1; Protein p6]
Length = 507
Score = 51.6 bits (122), Expect = 5e-07
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVD 262
C+NCG+ GHI+ C P RGC+KCG+ GH +DC +
Sbjct: 395 CFNCGKEGHIAKNC------RAPRKRGCWKCGKEGHQMKDCTE 431
>sp|P05961|POL_HV1MN Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein p17
(MA); Capsid protein p24 (CA); p2 spacer peptide;
Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
pol); Protease (Retropepsin) (PR); Reverse
transcriptase/ribonuclease H (p66 RT); p51 RT; p15;
Integrase (IN)]
Length = 1441
Score = 51.6 bits (122), Expect = 5e-07
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +2
Query: 134 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVD 262
C+NCG+ GHI+ C P RGC+KCG+ GH +DC +
Sbjct: 395 CFNCGKEGHIAKNC------RAPRKRGCWKCGKEGHQMKDCTE 431
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,903,407
Number of Sequences: 369166
Number of extensions: 286736
Number of successful extensions: 1673
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 68,354,980
effective HSP length: 58
effective length of database: 57,640,350
effective search space used: 1671570150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)