Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_K15
(576 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-bin... 141 1e-33
sp|P53849|GIS2_YEAST Zinc-finger protein GIS2 120 2e-27
sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein ... 113 3e-25
sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein ... 113 4e-25
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 112 5e-25
sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein ... 112 7e-25
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 100 2e-21
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germ... 85 1e-16
sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germ... 78 2e-14
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germ... 71 2e-12
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
Length = 271
Score = 141 bits (355), Expect = 1e-33
Identities = 69/181 (38%), Positives = 91/181 (50%), Gaps = 10/181 (5%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 184
C+ CG++GH SRDC S + G+ A+ CY CG+ GH+SRDCP +
Sbjct: 72 CFRCGEAGHMSRDCPNSAKPGA-AKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRS 130
Query: 185 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRN-NGPSGRGCYKCGES 361
CY CG +GHIS C G +G R CYKCG++
Sbjct: 131 GAQGGYSGD--------------RTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDA 176
Query: 362 GHMARDCVDG-----NEKQVKCYNCNQSGHMSRECPN----GPAEKTCYKCHNTGHIARD 514
GH++RDC +G KCY C +SGHMSRECP+ G ++ CYKC GHI+R+
Sbjct: 177 GHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRE 236
Query: 515 C 517
C
Sbjct: 237 C 237
Score = 138 bits (348), Expect = 9e-33
Identities = 77/200 (38%), Positives = 88/200 (44%), Gaps = 28/200 (14%)
Frame = +2
Query: 2 ECYNCGQSGHFSRDCTES----------KRYGSGARSG-----GCYNCGENGHISRDCPQ 136
ECY CGQ GH SRDC S KR SGA+ G CY CG+ GHISRDCP
Sbjct: 98 ECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPN 157
Query: 137 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSR 316
CY CG +GHIS C G
Sbjct: 158 GQGGYSGAGD-----------------------------RTCYKCGDAGHISRDCPNGQG 188
Query: 317 N-NGPSGRGCYKCGESGHMARDCVDGNEK---QVKCYNCNQSGHMSRECP---------N 457
+G R CYKCGESGHM+R+C CY C + GH+SRECP
Sbjct: 189 GYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSR 248
Query: 458 GPAEKTCYKCHNTGHIARDC 517
G ++TCYKC GHI+RDC
Sbjct: 249 GGGDRTCYKCGEAGHISRDC 268
Score = 127 bits (319), Expect = 2e-29
Identities = 63/197 (31%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 184
C NCG+ GH++R+C E+ G RS C+ CGE GH+SR+CP
Sbjct: 18 CRNCGKEGHYARECPEADSKGD-ERSTTCFRCGEEGHMSRECPNEARSGAAGAM------ 70
Query: 185 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 364
C+ CG++GH+S C ++ G CYKCG+ G
Sbjct: 71 ------------------------TCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEG 106
Query: 365 HMARDCVD--------------------GNEKQVKCYNCNQSGHMSRECPN------GPA 466
H++RDC G CY C +GH+SR+CPN G
Sbjct: 107 HLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSGAG 166
Query: 467 EKTCYKCHNTGHIARDC 517
++TCYKC + GHI+RDC
Sbjct: 167 DRTCYKCGDAGHISRDC 183
Score = 103 bits (258), Expect = 2e-22
Identities = 53/182 (29%), Positives = 76/182 (41%), Gaps = 25/182 (13%)
Frame = +2
Query: 47 TESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 226
TE + S C NCG+ GH +R+CP+
Sbjct: 4 TEDVKRPRTESSTSCRNCGKEGHYARECPE------------------------------ 33
Query: 227 XXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVD----GN 394
C+ CG+ GH+S C +R+ C++CGE+GHM+RDC + G
Sbjct: 34 ADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGA 93
Query: 395 EKQVKCYNCNQSGHMSRECPNG---------------------PAEKTCYKCHNTGHIAR 511
K +CY C Q GH+SR+CP+ ++TCYKC + GHI+R
Sbjct: 94 AKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISR 153
Query: 512 DC 517
DC
Sbjct: 154 DC 155
Score = 64.3 bits (155), Expect = 2e-10
Identities = 27/48 (56%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGG---CYNCGENGHISRDCPQN 139
CY CG+ GH SR+C E+ G+R GG CY CGE GHISRDCP +
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
Score = 47.0 bits (110), Expect = 3e-05
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +2
Query: 395 EKQVKCYNCNQSGHMSRECPNGPAE-----KTCYKCHNTGHIARDCHDD 526
E C NC + GH +RECP ++ TC++C GH++R+C ++
Sbjct: 13 ESSTSCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNE 61
>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
Length = 153
Score = 120 bits (301), Expect = 2e-27
Identities = 59/172 (34%), Positives = 79/172 (45%), Gaps = 1/172 (0%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 184
CYNC + GH DCT + CYNCGE GH+ +C
Sbjct: 25 CYNCNKPGHVQTDCTMPRT----VEFKQCYNCGETGHVRSECT----------------- 63
Query: 185 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 364
C+NC Q+GHIS C + + + S CYKCG
Sbjct: 64 ----------------------VQRCFNCNQTGHISRECPEPKKTSRFSKVSCYKCGGPN 101
Query: 365 HMARDCV-DGNEKQVKCYNCNQSGHMSRECPNGPAEKTCYKCHNTGHIARDC 517
HMA+DC+ + +KCY C Q+GHMSR+C N ++ CY C+ TGHI++DC
Sbjct: 102 HMAKDCMKEDGISGLKCYTCGQAGHMSRDCQN---DRLCYNCNETGHISKDC 150
Score = 100 bits (248), Expect = 3e-21
Identities = 48/151 (31%), Positives = 71/151 (47%)
Frame = +2
Query: 2 ECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXX 181
+CYNCG++GH +CT + C+NC + GHISR+CP+
Sbjct: 48 QCYNCGETGHVRSECTVQR----------CFNCNQTGHISRECPEPKKTSRFSKV----- 92
Query: 182 XXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGES 361
+CY CG H++ C + +G SG CY CG++
Sbjct: 93 -------------------------SCYKCGGPNHMAKDCM---KEDGISGLKCYTCGQA 124
Query: 362 GHMARDCVDGNEKQVKCYNCNQSGHMSRECP 454
GHM+RDC + CYNCN++GH+S++CP
Sbjct: 125 GHMSRDC----QNDRLCYNCNETGHISKDCP 151
Score = 97.8 bits (242), Expect = 2e-20
Identities = 52/185 (28%), Positives = 80/185 (43%), Gaps = 6/185 (3%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 184
CY CG+ GH + DC +S+R CYNC + GH+ DC
Sbjct: 6 CYVCGKIGHLAEDC-DSERL--------CYNCNKPGHVQTDCTM---------------- 40
Query: 185 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 364
CYNCG++GH+ S CT + C+ C ++G
Sbjct: 41 -----------------PRTVEFKQCYNCGETGHVRSECTV---------QRCFNCNQTG 74
Query: 365 HMARDCVDGNE----KQVKCYNCNQSGHMSREC--PNGPAEKTCYKCHNTGHIARDCHDD 526
H++R+C + + +V CY C HM+++C +G + CY C GH++RDC +D
Sbjct: 75 HISRECPEPKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQND 134
Query: 527 *F*FN 541
+N
Sbjct: 135 RLCYN 139
Score = 65.1 bits (157), Expect = 1e-10
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Frame = +2
Query: 329 SGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSREC--PNGPAEKTCYKCHNTGH 502
S + CY CG+ GH+A DC + + CYNCN+ GH+ +C P K CY C TGH
Sbjct: 2 SQKACYVCGKIGHLAEDC----DSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGH 57
Query: 503 IARDC 517
+ +C
Sbjct: 58 VRSEC 62
Score = 57.8 bits (138), Expect = 2e-08
Identities = 23/45 (51%), Positives = 28/45 (62%)
Frame = +2
Query: 2 ECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQ 136
+CY CGQ+GH SRDC + CYNC E GHIS+DCP+
Sbjct: 117 KCYTCGQAGHMSRDCQNDRL---------CYNCNETGHISKDCPK 152
Score = 31.6 bits (70), Expect = 1.5
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTES 55
CYNC ++GH S+DC ++
Sbjct: 137 CYNCNETGHISKDCPKA 153
Score = 29.6 bits (65), Expect = 5.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 464 AEKTCYKCHNTGHIARDCHDD*F*FN 541
++K CY C GH+A DC + +N
Sbjct: 2 SQKACYVCGKIGHLAEDCDSERLCYN 27
>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
Length = 179
Score = 113 bits (283), Expect = 3e-25
Identities = 62/177 (35%), Positives = 79/177 (44%), Gaps = 6/177 (3%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 184
CYNC Q+GH + +CTE ++ + CY CG GH+ RDCP +
Sbjct: 38 CYNCNQTGHKASECTEPQQEKT------CYACGTAGHLVRDCPSSPNPRQGA-------- 83
Query: 185 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYC-TQGSRNNGPSG-----RGCY 346
CY CG+ GHI+ C T G ++ G G CY
Sbjct: 84 ------------------------ECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCY 119
Query: 347 KCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAEKTCYKCHNTGHIARDC 517
CG GH ARDC G VKCY+C + GH S EC + CYKC+ GHIA +C
Sbjct: 120 ACGSYGHQARDCTMG----VKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 89.7 bits (221), Expect = 5e-18
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 3/89 (3%)
Frame = +2
Query: 260 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHM 439
CYNCG++GH + CT+GS CY C ++GH A +C + +++ CY C +GH+
Sbjct: 19 CYNCGENGHQARECTKGSI--------CYNCNQTGHKASECTEPQQEKT-CYACGTAGHL 69
Query: 440 SRECPNGPAEK---TCYKCHNTGHIARDC 517
R+CP+ P + CYKC GHIARDC
Sbjct: 70 VRDCPSSPNPRQGAECYKCGRVGHIARDC 98
Score = 81.3 bits (199), Expect = 2e-15
Identities = 33/62 (53%), Positives = 39/62 (62%)
Frame = +2
Query: 332 GRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAEKTCYKCHNTGHIAR 511
G CY CGE+GH AR+C G+ CYNCNQ+GH + EC EKTCY C GH+ R
Sbjct: 16 GPRCYNCGENGHQARECTKGSI----CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVR 71
Query: 512 DC 517
DC
Sbjct: 72 DC 73
Score = 71.6 bits (174), Expect = 1e-12
Identities = 43/133 (32%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Frame = +2
Query: 2 ECYNCGQSGHFSRDCTESKRYGSGARSGG------CYNCGENGHISRDCPQNXXXXXXXX 163
ECY CG+ GH +RDC + + SG R GG CY CG GH +RDC
Sbjct: 84 ECYKCGRVGHIARDCRTNGQQ-SGGRFGGHRSNMNCYACGSYGHQARDCTMGV------- 135
Query: 164 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGC 343
CY+CG+ GH S C Q S G+ C
Sbjct: 136 -------------------------------KCYSCGKIGHRSFECQQAS-----DGQLC 159
Query: 344 YKCGESGHMARDC 382
YKC + GH+A +C
Sbjct: 160 YKCNQPGHIAVNC 172
>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 172
Score = 113 bits (282), Expect = 4e-25
Identities = 58/186 (31%), Positives = 84/186 (45%), Gaps = 14/186 (7%)
Frame = +2
Query: 2 ECYNCGQSGHFSRDCTESKRYGSGARSGG--------------CYNCGENGHISRDCPQN 139
EC+ CG++GH++R+C G G RS G CY CGE+GH+++DC
Sbjct: 5 ECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQ 64
Query: 140 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRN 319
CYNCG+ GHI+ C + R
Sbjct: 65 EDKA------------------------------------CYNCGRGGHIAKDCKEPKRE 88
Query: 320 NGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAEKTCYKCHNTG 499
CY CG+ GH+ARDC +E+ KCY+C + GH+ ++C + CY+C TG
Sbjct: 89 REQC---CYNCGKPGHLARDCDHADEQ--KCYSCGEFGHIQKDC----TKVKCYRCGETG 139
Query: 500 HIARDC 517
H+A +C
Sbjct: 140 HVAINC 145
Score = 101 bits (252), Expect = 1e-21
Identities = 52/149 (34%), Positives = 69/149 (46%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 184
CYNCG+ GH ++DC E KR R CYNCG+ GH++RDC
Sbjct: 69 CYNCGRGGHIAKDCKEPKR----EREQCCYNCGKPGHLARDCDH---------------- 108
Query: 185 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 364
CY+CG+ GHI CT+ CY+CGE+G
Sbjct: 109 --------------------ADEQKCYSCGEFGHIQKDCTKVK---------CYRCGETG 139
Query: 365 HMARDCVDGNEKQVKCYNCNQSGHMSREC 451
H+A +C +E V CY C +SGH++REC
Sbjct: 140 HVAINCSKTSE--VNCYRCGESGHLAREC 166
Score = 89.7 bits (221), Expect = 5e-18
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Frame = +2
Query: 80 SGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNN 259
S C+ CG GH +R+CP +
Sbjct: 3 SNECFKCGRTGHWARECPTG---------------IGRGRGMRSRGRAGFQFMSSSLPDI 47
Query: 260 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVD-GNEKQVKCYNCNQSGH 436
CY CG+SGH++ C + + CY CG GH+A+DC + E++ CYNC + GH
Sbjct: 48 CYRCGESGHLAKDC------DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 101
Query: 437 MSRECPNGPAEKTCYKCHNTGHIARDC 517
++R+C + +K CY C GHI +DC
Sbjct: 102 LARDCDHADEQK-CYSCGEFGHIQKDC 127
Score = 60.5 bits (145), Expect = 3e-09
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 19/84 (22%)
Frame = +2
Query: 329 SGRGCYKCGESGHMARDCVDG-------------------NEKQVKCYNCNQSGHMSREC 451
S C+KCG +GH AR+C G + CY C +SGH++++C
Sbjct: 2 SSNECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDC 61
Query: 452 PNGPAEKTCYKCHNTGHIARDCHD 523
+ +K CY C GHIA+DC +
Sbjct: 62 -DLQEDKACYNCGRGGHIAKDCKE 84
Score = 56.2 bits (134), Expect = 6e-08
Identities = 28/101 (27%), Positives = 40/101 (39%)
Frame = +2
Query: 2 ECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXX 181
+CY+CG+ GH +DCT+ K CY CGE GH++ +C +
Sbjct: 113 KCYSCGEFGHIQKDCTKVK----------CYRCGETGHVAINCSKTSEV----------- 151
Query: 182 XXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCT 304
NCY CG+SGH++ CT
Sbjct: 152 -------------------------NCYRCGESGHLARECT 167
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 112 bits (281), Expect = 5e-25
Identities = 59/192 (30%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Frame = +2
Query: 2 ECYNCGQSGHFSRDCTESKRYGSGARSGG--------------------CYNCGENGHIS 121
EC+ CG+SGH++R+C G G RS G CY CGE+GH++
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64
Query: 122 RDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYC 301
+DC + CYNCG+ GHI+ C
Sbjct: 65 KDCDLQE-------------------------------------DACYNCGRGGHIAKDC 87
Query: 302 TQGSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAEKTCY 481
+ R CY CG+ GH+ARDC +E+ KCY+C + GH+ ++C + CY
Sbjct: 88 KEPKREREQC---CYNCGKPGHLARDCDHADEQ--KCYSCGEFGHIQKDC----TKVKCY 138
Query: 482 KCHNTGHIARDC 517
+C TGH+A +C
Sbjct: 139 RCGETGHVAINC 150
Score = 101 bits (252), Expect = 1e-21
Identities = 52/149 (34%), Positives = 69/149 (46%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 184
CYNCG+ GH ++DC E KR R CYNCG+ GH++RDC
Sbjct: 74 CYNCGRGGHIAKDCKEPKR----EREQCCYNCGKPGHLARDCDH---------------- 113
Query: 185 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 364
CY+CG+ GHI CT+ CY+CGE+G
Sbjct: 114 --------------------ADEQKCYSCGEFGHIQKDCTKVK---------CYRCGETG 144
Query: 365 HMARDCVDGNEKQVKCYNCNQSGHMSREC 451
H+A +C +E V CY C +SGH++REC
Sbjct: 145 HVAINCSKTSE--VNCYRCGESGHLAREC 171
Score = 89.7 bits (221), Expect = 5e-18
Identities = 43/111 (38%), Positives = 59/111 (53%), Gaps = 23/111 (20%)
Frame = +2
Query: 254 NNCYNCGQSGHISSYC-TQGSRNNGPSGRG--------------------CYKCGESGHM 370
N C+ CG+SGH + C T G R G RG CY+CGESGH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 371 ARDCVDGNEKQVKCYNCNQSGHMSREC--PNGPAEKTCYKCHNTGHIARDC 517
A+DC + ++ CYNC + GH++++C P E+ CY C GH+ARDC
Sbjct: 64 AKDC---DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 88.2 bits (217), Expect = 1e-17
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 1/147 (0%)
Frame = +2
Query: 80 SGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNN 259
S C+ CG +GH +R+CP +
Sbjct: 3 SNECFKCGRSGHWARECPTG---------GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI 53
Query: 260 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVD-GNEKQVKCYNCNQSGH 436
CY CG+SGH++ C CY CG GH+A+DC + E++ CYNC + GH
Sbjct: 54 CYRCGESGHLAKDCDL-------QEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 106
Query: 437 MSRECPNGPAEKTCYKCHNTGHIARDC 517
++R+C + +K CY C GHI +DC
Sbjct: 107 LARDCDHADEQK-CYSCGEFGHIQKDC 132
Score = 58.2 bits (139), Expect = 1e-08
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 25/90 (27%)
Frame = +2
Query: 329 SGRGCYKCGESGHMARDCVDGNEK-------------------------QVKCYNCNQSG 433
S C+KCG SGH AR+C G + CY C +SG
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61
Query: 434 HMSRECPNGPAEKTCYKCHNTGHIARDCHD 523
H++++C E CY C GHIA+DC +
Sbjct: 62 HLAKDC--DLQEDACYNCGRGGHIAKDCKE 89
Score = 56.2 bits (134), Expect = 6e-08
Identities = 28/101 (27%), Positives = 40/101 (39%)
Frame = +2
Query: 2 ECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXX 181
+CY+CG+ GH +DCT+ K CY CGE GH++ +C +
Sbjct: 118 KCYSCGEFGHIQKDCTKVK----------CYRCGETGHVAINCSKTSEV----------- 156
Query: 182 XXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCT 304
NCY CG+SGH++ CT
Sbjct: 157 -------------------------NCYRCGESGHLARECT 172
>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 178
Score = 112 bits (280), Expect = 7e-25
Identities = 59/192 (30%), Positives = 84/192 (43%), Gaps = 20/192 (10%)
Frame = +2
Query: 2 ECYNCGQSGHFSRDCTESKRYGSGARSGG--------------------CYNCGENGHIS 121
EC+ CG+SGH++R+C G G RS G CY CGE+GH++
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLA 64
Query: 122 RDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYC 301
+DC CYNCG+ GHI+ C
Sbjct: 65 KDCDLQEDEA------------------------------------CYNCGRGGHIAKDC 88
Query: 302 TQGSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAEKTCY 481
+ R CY CG+ GH+ARDC +E+ KCY+C + GH+ ++C + CY
Sbjct: 89 KEPKREREQC---CYNCGKPGHLARDCDHADEQ--KCYSCGEFGHIQKDC----TKVKCY 139
Query: 482 KCHNTGHIARDC 517
+C TGH+A +C
Sbjct: 140 RCGETGHVAINC 151
Score = 101 bits (252), Expect = 1e-21
Identities = 52/149 (34%), Positives = 69/149 (46%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 184
CYNCG+ GH ++DC E KR R CYNCG+ GH++RDC
Sbjct: 75 CYNCGRGGHIAKDCKEPKR----EREQCCYNCGKPGHLARDCDH---------------- 114
Query: 185 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 364
CY+CG+ GHI CT+ CY+CGE+G
Sbjct: 115 --------------------ADEQKCYSCGEFGHIQKDCTKVK---------CYRCGETG 145
Query: 365 HMARDCVDGNEKQVKCYNCNQSGHMSREC 451
H+A +C +E V CY C +SGH++REC
Sbjct: 146 HVAINCSKTSE--VNCYRCGESGHLAREC 172
Score = 90.1 bits (222), Expect = 4e-18
Identities = 45/111 (40%), Positives = 59/111 (53%), Gaps = 23/111 (20%)
Frame = +2
Query: 254 NNCYNCGQSGHISSYC-TQGSRNNGPSGRG--------------------CYKCGESGHM 370
N C+ CG+SGH + C T G R G RG CY+CGESGH+
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHL 63
Query: 371 ARDCVDGNEKQVKCYNCNQSGHMSREC--PNGPAEKTCYKCHNTGHIARDC 517
A+DC D E + CYNC + GH++++C P E+ CY C GH+ARDC
Sbjct: 64 AKDC-DLQEDEA-CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 89.4 bits (220), Expect = 6e-18
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 1/147 (0%)
Frame = +2
Query: 80 SGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNN 259
S C+ CG +GH +R+CP +
Sbjct: 3 SNECFKCGRSGHWARECPTG---------GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI 53
Query: 260 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVD-GNEKQVKCYNCNQSGH 436
CY CG+SGH++ C + CY CG GH+A+DC + E++ CYNC + GH
Sbjct: 54 CYRCGESGHLAKDC------DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 107
Query: 437 MSRECPNGPAEKTCYKCHNTGHIARDC 517
++R+C + +K CY C GHI +DC
Sbjct: 108 LARDCDHADEQK-CYSCGEFGHIQKDC 133
Score = 58.2 bits (139), Expect = 1e-08
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 25/90 (27%)
Frame = +2
Query: 329 SGRGCYKCGESGHMARDCVDGNEK-------------------------QVKCYNCNQSG 433
S C+KCG SGH AR+C G + CY C +SG
Sbjct: 2 SSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG 61
Query: 434 HMSRECPNGPAEKTCYKCHNTGHIARDCHD 523
H++++C + ++ CY C GHIA+DC +
Sbjct: 62 HLAKDC-DLQEDEACYNCGRGGHIAKDCKE 90
Score = 56.2 bits (134), Expect = 6e-08
Identities = 28/101 (27%), Positives = 40/101 (39%)
Frame = +2
Query: 2 ECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXX 181
+CY+CG+ GH +DCT+ K CY CGE GH++ +C +
Sbjct: 119 KCYSCGEFGHIQKDCTKVK----------CYRCGETGHVAINCSKTSEV----------- 157
Query: 182 XXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCT 304
NCY CG+SGH++ CT
Sbjct: 158 -------------------------NCYRCGESGHLARECT 173
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 100 bits (250), Expect = 2e-21
Identities = 58/186 (31%), Positives = 81/186 (43%), Gaps = 16/186 (8%)
Frame = +2
Query: 8 YNCGQSGHFSRDCTESKRYGSGARSGG----------------CYNCGENGHISRDCPQN 139
+ CG SGH++R C R G+G R GG CY CGE+G +++C
Sbjct: 7 FACGHSGHWARGCP---RGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC--- 60
Query: 140 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRN 319
N CYNCG+SGHI+ C R
Sbjct: 61 ----------------------------------VLLGNICYNCGRSGHIAKDCKDPKRE 86
Query: 320 NGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAEKTCYKCHNTG 499
+ CY CG GH+ARDC +K+ KCY+C + GH+ ++C A+ CY+C G
Sbjct: 87 R---RQHCYTCGRLGHLARDC--DRQKEQKCYSCGKLGHIQKDC----AQVKCYRCGEIG 137
Query: 500 HIARDC 517
H+A +C
Sbjct: 138 HVAINC 143
Score = 76.6 bits (187), Expect = 4e-14
Identities = 41/149 (27%), Positives = 59/149 (39%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 184
CY CG+SG +++C CYNCG +GHI++DC
Sbjct: 47 CYCCGESGRNAKNCV--------LLGNICYNCGRSGHIAKDCKD---------------- 82
Query: 185 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 364
+CY CG+ GH++ C + CY CG+ G
Sbjct: 83 -----------------PKRERRQHCYTCGRLGHLARDCDRQKEQK------CYSCGKLG 119
Query: 365 HMARDCVDGNEKQVKCYNCNQSGHMSREC 451
H+ +DC QVKCY C + GH++ C
Sbjct: 120 HIQKDCA-----QVKCYRCGEIGHVAINC 143
Score = 51.2 bits (121), Expect = 2e-06
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Frame = +2
Query: 263 YNCGQSGHISSYCTQGS---RNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSG 433
+ CG SGH + C +G R G GRG +CG + CY C +SG
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGS-QCGST-----------TLSYTCYCCGESG 54
Query: 434 HMSRECPNGPAEKTCYKCHNTGHIARDCHD 523
++ C CY C +GHIA+DC D
Sbjct: 55 RNAKNCVL--LGNICYNCGRSGHIAKDCKD 82
Score = 45.1 bits (105), Expect = 1e-04
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 2 ECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDC 130
+CY+CG+ GH +DC + K CY CGE GH++ +C
Sbjct: 111 KCYSCGKLGHIQKDCAQVK----------CYRCGEIGHVAINC 143
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
Length = 974
Score = 85.1 bits (209), Expect = 1e-16
Identities = 57/209 (27%), Positives = 75/209 (35%), Gaps = 38/209 (18%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESK--RYGSGARSGGC--YNCGENGHISRDCPQNXXXXXXXXXXX 172
CYNC Q GH SRDC E + R G +GG + G G D
Sbjct: 284 CYNCQQPGHNSRDCPEERKpreGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGES 343
Query: 173 XXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKC 352
NNC+NC Q GH S+ C + + P R CY C
Sbjct: 344 GFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP--RVCYNC 401
Query: 353 GESGHMARDCVD-------------------------------GNEKQ---VKCYNCNQS 430
+ GH +RDC + GN ++ +KC+NC
Sbjct: 402 QQPGHNSRDCPEERKpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGE 461
Query: 431 GHMSRECPNGPAEKTCYKCHNTGHIARDC 517
GH S ECP P + C+ C GH + +C
Sbjct: 462 GHRSAECPEPP--RGCFNCGEQGHRSNEC 488
Score = 80.9 bits (198), Expect = 2e-15
Identities = 55/181 (30%), Positives = 69/181 (38%), Gaps = 7/181 (3%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 184
C+NC Q GH S DC E K+ CYNC + GH SRDCP+
Sbjct: 259 CFNCQQPGHRSNDCPEPKKE---REPRVCYNCQQPGHNSRDCPEERKpreGRNGFTGGSS 315
Query: 185 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQ-GSRNNGPSGRGCYKCGES 361
N G +G S GS NNG SG G G +
Sbjct: 316 GFGGG----------------------NGGGTGFDSGLTNGFGSGNNGESGFGSGGFGGN 353
Query: 362 GH---MARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAE---KTCYKCHNTGHIARDCHD 523
+ D E+ C+NC Q GH S +CP E + CY C GH +RDC +
Sbjct: 354 SNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Query: 524 D 526
+
Sbjct: 414 E 414
Score = 53.1 bits (126), Expect = 5e-07
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 308 GSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAE---KTC 478
G N+G SG G D E+ C+NC Q GH S +CP E + C
Sbjct: 225 GGGNSGGSGFGSGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVC 284
Query: 479 YKCHNTGHIARDCHDD 526
Y C GH +RDC ++
Sbjct: 285 YNCQQPGHNSRDCPEE 300
Score = 48.9 bits (115), Expect = 9e-06
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = +2
Query: 254 NNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDC 382
NNC+NC Q GH S+ C + + P R CY C + GH +RDC
Sbjct: 257 NNCFNCQQPGHRSNDCPEPKKEREP--RVCYNCQQPGHNSRDC 297
Score = 48.5 bits (114), Expect = 1e-05
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2
Query: 2 ECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCP 133
+C+NC GH S +C E R GC+NCGE GH S +CP
Sbjct: 454 KCFNCKGEGHRSAECPEPPR--------GCFNCGEQGHRSNECP 489
Score = 31.2 bits (69), Expect = 1.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGG 88
C+NCG+ GH S +C + GA G
Sbjct: 475 CFNCGEQGHRSNECPNPAKpreGAEGEG 502
>sp|O76743|GLH4_CAEEL ATP-dependent RNA helicase glh-4 (Germline helicase 4)
Length = 1156
Score = 77.8 bits (190), Expect = 2e-14
Identities = 48/174 (27%), Positives = 62/174 (35%), Gaps = 5/174 (2%)
Frame = +2
Query: 11 NCGQSGHFSRDCTESK-RYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXXX 187
N G F + + G R GC+NCGE GHIS++C +
Sbjct: 545 NFGNGNTFGEPSDNQRGNWDGGERPRGCHNCGEEGHISKECDKPKVPRFP---------- 594
Query: 188 XXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGH 367
C NC Q GH +S C Q GP C CG GH
Sbjct: 595 ------------------------CRNCEQLGHFASDCDQPRVPRGP----CRNCGIEGH 626
Query: 368 MARDCVDGNEKQVKCYNCNQSGHMSRECPNGPAE----KTCYKCHNTGHIARDC 517
A DC + C NC Q GH +++C N + C +C GH +C
Sbjct: 627 FAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWGYEC 680
Score = 73.9 bits (180), Expect = 3e-13
Identities = 44/158 (27%), Positives = 57/158 (36%), Gaps = 3/158 (1%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 184
C+NCG+ GH S++C + K C NC + GH + DC Q
Sbjct: 572 CHNCGEEGHISKECDKPK-----VPRFPCRNCEQLGHFASDCDQ---------------- 610
Query: 185 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 364
C NCG GH + C Q GP C CG+ G
Sbjct: 611 ------------------PRVPRGPCRNCGIEGHFAVDCDQPKVPRGP----CRNCGQEG 648
Query: 365 HMARDCVDGN---EKQVKCYNCNQSGHMSRECPNGPAE 469
H A+DC + E C C + GH ECP P +
Sbjct: 649 HFAKDCQNERVRMEPTEPCRRCAEEGHWGYECPTRPKD 686
Score = 67.0 bits (162), Expect = 3e-11
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = +2
Query: 260 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHM 439
C+NCG+ GHIS C + P C C + GH A DC + C NC GH
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFP----CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHF 627
Query: 440 SREC-----PNGPAEKTCYKCHNTGHIARDCHDD 526
+ +C P GP C C GH A+DC ++
Sbjct: 628 AVDCDQPKVPRGP----CRNCGQEGHFAKDCQNE 657
Score = 49.3 bits (116), Expect = 7e-06
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = +2
Query: 263 YNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMS 442
+N G S++ G ++ G G GE R DG E+ C+NC + GH+S
Sbjct: 524 FNTGGGAVKSAFGAAGFGSSSNFGNG-NTFGEPSDNQRGNWDGGERPRGCHNCGEEGHIS 582
Query: 443 RECPNGPAEK-TCYKCHNTGHIARDC 517
+EC + C C GH A DC
Sbjct: 583 KECDKPKVPRFPCRNCEQLGHFASDC 608
>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 (Germline helicase 1)
Length = 763
Score = 70.9 bits (172), Expect = 2e-12
Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 36/124 (29%)
Frame = +2
Query: 254 NNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVD--------------- 388
NNC+NC Q GH SS C + + P R CY C + GH +R+C +
Sbjct: 158 NNCFNCQQPGHRSSDCPEPRKEREP--RVCYNCQQPGHTSRECTEERKpreGRTGGFGGG 215
Query: 389 -------------------GNEKQ--VKCYNCNQSGHMSRECPNGPAEKTCYKCHNTGHI 505
G E++ +KC+NC GH S ECP P + C+ C GH
Sbjct: 216 AGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPP--RGCFNCGEQGHR 273
Query: 506 ARDC 517
+ +C
Sbjct: 274 SNEC 277
Score = 63.2 bits (152), Expect = 5e-10
Identities = 42/164 (25%), Positives = 55/164 (33%), Gaps = 32/164 (19%)
Frame = +2
Query: 62 YGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241
+G G R+ C+NC + GH S DCP+
Sbjct: 151 HGGGERNNNCFNCQQPGHRSSDCPEPRKEREPRV-------------------------- 184
Query: 242 XXXXNNCYNCGQSGHISSYCTQGSR--------------------NNGPSGRG------- 340
CYNC Q GH S CT+ + N+G G G
Sbjct: 185 ------CYNCQQPGHTSRECTEERKpreGRTGGFGGGAGFGNNGGNDGFGGDGGFGGGEE 238
Query: 341 -----CYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSRECPN 457
C+ C GH + +C E C+NC + GH S ECPN
Sbjct: 239 RGPMKCFNCKGEGHRSAECP---EPPRGCFNCGEQGHRSNECPN 279
Score = 61.6 bits (148), Expect = 1e-09
Identities = 35/128 (27%), Positives = 47/128 (36%), Gaps = 2/128 (1%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 184
C+NC Q GH S DC E ++ CYNC + GH SR+C +
Sbjct: 160 CFNCQQPGHRSSDCPEPRK---EREPRVCYNCQQPGHTSRECTEERKpreGRTGGFGGGA 216
Query: 185 XXXXXXXXXXXXXXXXXXXXXXXN--NCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGE 358
C+NC GH S+ C + RGC+ CGE
Sbjct: 217 GFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPE-------PPRGCFNCGE 269
Query: 359 SGHMARDC 382
GH + +C
Sbjct: 270 QGHRSNEC 277
Score = 58.2 bits (139), Expect = 1e-08
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Frame = +2
Query: 272 GQSGHISSYCTQGSRNNGPSGRGCYKCGESGHMARDCVDGNEKQVKCYNCNQSGHMSREC 451
G SG T G G G GE GH G E+ C+NC Q GH S +C
Sbjct: 120 GGSGGFGGSATGFGSGGGSFGGGNSGFGEGGH------GGGERNNNCFNCQQPGHRSSDC 173
Query: 452 PNGPAE---KTCYKCHNTGHIARDCHDD 526
P E + CY C GH +R+C ++
Sbjct: 174 PEPRKEREPRVCYNCQQPGHTSRECTEE 201
Score = 48.5 bits (114), Expect = 1e-05
Identities = 20/44 (45%), Positives = 25/44 (56%)
Frame = +2
Query: 2 ECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCP 133
+C+NC GH S +C E R GC+NCGE GH S +CP
Sbjct: 243 KCFNCKGEGHRSAECPEPPR--------GCFNCGEQGHRSNECP 278
Score = 29.6 bits (65), Expect = 5.7
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 5 CYNCGQSGHFSRDCTESKRYGSGARSGG 88
C+NCG+ GH S +C + G G
Sbjct: 264 CFNCGEQGHRSNECPNPAKpreGVEGEG 291
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,428,479
Number of Sequences: 369166
Number of extensions: 1189744
Number of successful extensions: 7678
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6716
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4275400980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)