Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_025_G09
(622 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-bin... 103 3e-22
sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein ... 87 3e-17
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 87 3e-17
sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein ... 87 3e-17
sp|P53849|GIS2_YEAST Zinc-finger protein GIS2 77 5e-14
sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein ... 70 3e-12
sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing pr... 67 3e-11
sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germ... 66 8e-11
sp|P27484|GRP2_NICSY Glycine-rich protein 2 63 7e-10
sp|Q38896|GRP2B_ARATH Glycine-rich protein 2b (AtGRP2b) 56 8e-08
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP (Hexamer-binding protein)
Length = 271
Score = 103 bits (258), Expect = 3e-22
Identities = 68/200 (34%), Positives = 79/200 (39%), Gaps = 28/200 (14%)
Frame = +3
Query: 48 ECYNCGQSGHFSRDCTES----------KRYGSGARSG-----GCYNCGENGHISRDCPQ 182
ECY CGQ GH SRDC S KR SGA+ G CY CG+ GHISRDCP
Sbjct: 98 ECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPN 157
Query: 183 NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSR 362
CY CG +GHIS C G
Sbjct: 158 GQGGYSGAGD-----------------------------RTCYKCGDAGHISRDCPNGQG 188
Query: 363 N-NGPSGRGCYKCGESG------------AYG*RLCRWY*KTSQVLQLQPKWPHVKRMSK 503
+G R CYKCGESG G R C K + + P+ S+
Sbjct: 189 GYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSR 248
Query: 504 WTSEKTCYKCHNTGHIARDC 563
++TCYKC GHI+RDC
Sbjct: 249 GGGDRTCYKCGEAGHISRDC 268
Score = 90.5 bits (223), Expect = 3e-18
Identities = 52/171 (30%), Positives = 74/171 (43%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 230
C NCG+ GH++R+C E+ G RS C+ CGE GH+SR+CP
Sbjct: 18 CRNCGKEGHYARECPEADSKGD-ERSTTCFRCGEEGHMSRECPNEARSGAAGAM------ 70
Query: 231 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 410
C+ CG++GH+S C ++ G CYKCG+ G
Sbjct: 71 ------------------------TCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEG 106
Query: 411 AYG*RLCRWY*KTSQVLQLQPKWPHVKRMSKWTSEKTCYKCHNTGHIARDC 563
R C S+ Q K ++ ++TCYKC + GHI+RDC
Sbjct: 107 HLS-RDCPSSQGGSRGGYGQ-KRGRSGAQGGYSGDRTCYKCGDAGHISRDC 155
Score = 89.0 bits (219), Expect = 9e-18
Identities = 57/192 (29%), Positives = 76/192 (39%), Gaps = 16/192 (8%)
Frame = +3
Query: 36 QRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXX 215
+R C+ CG+ GH SR+C R G+ A + C+ CGE GH+SRDCP +
Sbjct: 40 ERSTTCFRCGEEGHMSRECPNEARSGA-AGAMTCFRCGEAGHMSRDCPNSAKPGAAKGF- 97
Query: 216 XXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQ---GSR-----NNG 371
CY CGQ GH+S C GSR G
Sbjct: 98 -----------------------------ECYKCGQEGHLSRDCPSSQGGSRGGYGQKRG 128
Query: 372 PSG--------RGCYKCGESGAYG*RLCRWY*KTSQVLQLQPKWPHVKRMSKWTSEKTCY 527
SG R CYKCG++G + P+ + ++TCY
Sbjct: 129 RSGAQGGYSGDRTCYKCGDAG-----------------HISRDCPNGQGGYSGAGDRTCY 171
Query: 528 KCHNTGHIARDC 563
KC + GHI+RDC
Sbjct: 172 KCGDAGHISRDC 183
Score = 64.3 bits (155), Expect = 2e-10
Identities = 27/48 (56%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTESKRYGSGARSGG---CYNCGENGHISRDCPQN 185
CY CG+ GH SR+C E+ G+R GG CY CGE GHISRDCP +
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
Score = 47.8 bits (112), Expect = 2e-05
Identities = 23/87 (26%), Positives = 36/87 (41%)
Frame = +3
Query: 303 NCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGAYG*RLCRWY*KTSQVLQLQPKWP 482
+C NCG+ GH + C + C++CGE G + + P
Sbjct: 17 SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEG-----------------HMSRECP 59
Query: 483 HVKRMSKWTSEKTCYKCHNTGHIARDC 563
+ R S TC++C GH++RDC
Sbjct: 60 NEAR-SGAAGAMTCFRCGEAGHMSRDC 85
Score = 47.4 bits (111), Expect = 3e-05
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +1
Query: 394 NAARVGHMARDCVD----GIEKQVKCYNCNQSGHMSRECPN 504
N + GH AR+C + G E+ C+ C + GHMSRECPN
Sbjct: 20 NCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPN 60
Score = 45.8 bits (107), Expect = 9e-05
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Frame = +1
Query: 409 GHMARDCVD----GIEKQVKCYNCNQSGHMSRECPNGPAKKR 522
GHM+RDC + G K +CY C Q GH+SR+CP+ R
Sbjct: 79 GHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSR 120
Score = 43.9 bits (102), Expect = 3e-04
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Frame = +1
Query: 409 GHMARDCVDGI-----EKQVKCYNCNQSGHMSRECPN 504
GH++RDC +G KCY C +SGHMSRECP+
Sbjct: 177 GHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPS 213
Score = 42.0 bits (97), Expect = 0.001
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Frame = +1
Query: 409 GHMARDCVD----GIEKQVKCYNCNQSGHMSRECPN 504
GHM+R+C + G + C+ C ++GHMSR+CPN
Sbjct: 52 GHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPN 87
Score = 41.2 bits (95), Expect = 0.002
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = +1
Query: 409 GHMARDCVDGI-----EKQVKCYNCNQSGHMSRECPNG 507
GH++RDC +G CY C +GH+SR+CPNG
Sbjct: 149 GHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNG 186
Score = 36.6 bits (83), Expect = 0.053
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 20/53 (37%)
Frame = +1
Query: 409 GHMARDCVD--------------------GIEKQVKCYNCNQSGHMSRECPNG 507
GH++RDC G CY C +GH+SR+CPNG
Sbjct: 106 GHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNG 158
Score = 33.1 bits (74), Expect = 0.58
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Frame = +1
Query: 409 GHMARDCVDGIEK--------QVKCYNCNQSGHMSRECPN 504
GH++R+C + CY C ++GH+SR+CP+
Sbjct: 231 GHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPS 270
Score = 32.7 bits (73), Expect = 0.76
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 442 EKQVKCYNCNQSGHMSRECPNGPAK 516
E C NC + GH +RECP +K
Sbjct: 13 ESSTSCRNCGKEGHYARECPEADSK 37
>sp|P53996|CNBP_MOUSE Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 178
Score = 87.0 bits (214), Expect = 3e-17
Identities = 51/171 (29%), Positives = 66/171 (38%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 230
CYNCG+ GH ++DC E KR R CYNCG+ GH++RDC
Sbjct: 75 CYNCGRGGHIAKDCKEPKR----EREQCCYNCGKPGHLARDCDH---------------- 114
Query: 231 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 410
CY+CG+ GHI CT+ CY+CGE+G
Sbjct: 115 --------------------ADEQKCYSCGEFGHIQKDCTKVK---------CYRCGETG 145
Query: 411 AYG*RLCRWY*KTSQVLQLQPKWPHVKRMSKWTSEKTCYKCHNTGHIARDC 563
HV TSE CY+C +GH+AR+C
Sbjct: 146 ------------------------HVAINCSKTSEVNCYRCGESGHLAREC 172
Score = 68.6 bits (166), Expect = 1e-11
Identities = 40/132 (30%), Positives = 53/132 (40%)
Frame = +3
Query: 15 DFFEQMSQRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXX 194
D E +R CYNCG+ GH +RDC A CY+CGE GHI +DC +
Sbjct: 87 DCKEPKREREQCCYNCGKPGHLARDCDH-------ADEQKCYSCGEFGHIQKDCTK---- 135
Query: 195 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGP 374
CY CG++GH++ C++ S N
Sbjct: 136 -----------------------------------VKCYRCGETGHVAINCSKTSEVN-- 158
Query: 375 SGRGCYKCGESG 410
CY+CGESG
Sbjct: 159 ----CYRCGESG 166
Score = 56.2 bits (134), Expect = 6e-08
Identities = 28/101 (27%), Positives = 40/101 (39%)
Frame = +3
Query: 48 ECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXX 227
+CY+CG+ GH +DCT+ K CY CGE GH++ +C +
Sbjct: 119 KCYSCGEFGHIQKDCTKVK----------CYRCGETGHVAINCSKTSEV----------- 157
Query: 228 XXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCT 350
NCY CG+SGH++ CT
Sbjct: 158 -------------------------NCYRCGESGHLARECT 173
Score = 52.4 bits (124), Expect = 9e-07
Identities = 35/146 (23%), Positives = 48/146 (32%)
Frame = +3
Query: 126 SGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNN 305
S C+ CG +GH +R+CP +
Sbjct: 3 SNECFKCGRSGHWARECPTG---------GGRGRGMRSRGRGGFTSDRGFQFVSSSLPDI 53
Query: 306 CYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESGAYG*RLCRWY*KTSQVLQLQPKWPH 485
CY CG+SGH++ C + CY CG G + Q K H
Sbjct: 54 CYRCGESGHLAKDC------DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGH 107
Query: 486 VKRMSKWTSEKTCYKCHNTGHIARDC 563
+ R E+ CY C GHI +DC
Sbjct: 108 LARDCDHADEQKCYSCGEFGHIQKDC 133
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/111 (27%), Positives = 41/111 (36%), Gaps = 21/111 (18%)
Frame = +3
Query: 300 NNCYNCGQSGHISSYC-TQGSRNNGPSGRG--------------------CYKCGESGAY 416
N C+ CG+SGH + C T G R G RG CY+CGESG
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG-- 61
Query: 417 G*RLCRWY*KTSQVLQLQPKWPHVKRMSKWTSEKTCYKCHNTGHIARDCHD 569
H+ + ++ CY C GHIA+DC +
Sbjct: 62 ----------------------HLAKDCDLQEDEACYNCGRGGHIAKDCKE 90
Score = 45.1 bits (105), Expect = 1e-04
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 349 HKAREIMVHQVVVVINAARVGHMARDCVD-GIEKQVKCYNCNQSGHMSRECPNGPAKK 519
H A++ + + N R GH+A+DC + E++ CYNC + GH++R+C + +K
Sbjct: 62 HLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 119
Score = 33.9 bits (76), Expect = 0.34
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 454 KCYNCNQSGHMSRECPNGPAKKR 522
+C+ C +SGH +RECP G + R
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGR 27
Score = 33.1 bits (74), Expect = 0.58
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 45 LECYNCGQSGHFSRDCT 95
+ CY CG+SGH +R+CT
Sbjct: 157 VNCYRCGESGHLARECT 173
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 87.0 bits (214), Expect = 3e-17
Identities = 51/171 (29%), Positives = 66/171 (38%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 230
CYNCG+ GH ++DC E KR R CYNCG+ GH++RDC
Sbjct: 74 CYNCGRGGHIAKDCKEPKR----EREQCCYNCGKPGHLARDCDH---------------- 113
Query: 231 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 410
CY+CG+ GHI CT+ CY+CGE+G
Sbjct: 114 --------------------ADEQKCYSCGEFGHIQKDCTKVK---------CYRCGETG 144
Query: 411 AYG*RLCRWY*KTSQVLQLQPKWPHVKRMSKWTSEKTCYKCHNTGHIARDC 563
HV TSE CY+C +GH+AR+C
Sbjct: 145 ------------------------HVAINCSKTSEVNCYRCGESGHLAREC 171
Score = 68.6 bits (166), Expect = 1e-11
Identities = 40/132 (30%), Positives = 53/132 (40%)
Frame = +3
Query: 15 DFFEQMSQRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXX 194
D E +R CYNCG+ GH +RDC A CY+CGE GHI +DC +
Sbjct: 86 DCKEPKREREQCCYNCGKPGHLARDCDH-------ADEQKCYSCGEFGHIQKDCTK---- 134
Query: 195 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGP 374
CY CG++GH++ C++ S N
Sbjct: 135 -----------------------------------VKCYRCGETGHVAINCSKTSEVN-- 157
Query: 375 SGRGCYKCGESG 410
CY+CGESG
Sbjct: 158 ----CYRCGESG 165
Score = 56.2 bits (134), Expect = 6e-08
Identities = 28/101 (27%), Positives = 40/101 (39%)
Frame = +3
Query: 48 ECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXX 227
+CY+CG+ GH +DCT+ K CY CGE GH++ +C +
Sbjct: 118 KCYSCGEFGHIQKDCTKVK----------CYRCGETGHVAINCSKTSEV----------- 156
Query: 228 XXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCT 350
NCY CG+SGH++ CT
Sbjct: 157 -------------------------NCYRCGESGHLARECT 172
Score = 47.8 bits (112), Expect = 2e-05
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 21/111 (18%)
Frame = +3
Query: 300 NNCYNCGQSGHISSYC-TQGSRNNGPSGRG--------------------CYKCGESGAY 416
N C+ CG+SGH + C T G R G RG CY+CGESG
Sbjct: 4 NECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESG-- 61
Query: 417 G*RLCRWY*KTSQVLQLQPKWPHVKRMSKWTSEKTCYKCHNTGHIARDCHD 569
++ LQ E CY C GHIA+DC +
Sbjct: 62 ---------HLAKDCDLQ--------------EDACYNCGRGGHIAKDCKE 89
Score = 33.9 bits (76), Expect = 0.34
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 454 KCYNCNQSGHMSRECPNGPAKKR 522
+C+ C +SGH +RECP G + R
Sbjct: 5 ECFKCGRSGHWARECPTGGGRGR 27
Score = 33.1 bits (74), Expect = 0.58
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 45 LECYNCGQSGHFSRDCT 95
+ CY CG+SGH +R+CT
Sbjct: 156 VNCYRCGESGHLARECT 172
>sp|O42395|CNBP_CHICK Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 172
Score = 87.0 bits (214), Expect = 3e-17
Identities = 51/171 (29%), Positives = 66/171 (38%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 230
CYNCG+ GH ++DC E KR R CYNCG+ GH++RDC
Sbjct: 69 CYNCGRGGHIAKDCKEPKR----EREQCCYNCGKPGHLARDCDH---------------- 108
Query: 231 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 410
CY+CG+ GHI CT+ CY+CGE+G
Sbjct: 109 --------------------ADEQKCYSCGEFGHIQKDCTKVK---------CYRCGETG 139
Query: 411 AYG*RLCRWY*KTSQVLQLQPKWPHVKRMSKWTSEKTCYKCHNTGHIARDC 563
HV TSE CY+C +GH+AR+C
Sbjct: 140 ------------------------HVAINCSKTSEVNCYRCGESGHLAREC 166
Score = 68.6 bits (166), Expect = 1e-11
Identities = 40/132 (30%), Positives = 53/132 (40%)
Frame = +3
Query: 15 DFFEQMSQRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXX 194
D E +R CYNCG+ GH +RDC A CY+CGE GHI +DC +
Sbjct: 81 DCKEPKREREQCCYNCGKPGHLARDCDH-------ADEQKCYSCGEFGHIQKDCTK---- 129
Query: 195 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGP 374
CY CG++GH++ C++ S N
Sbjct: 130 -----------------------------------VKCYRCGETGHVAINCSKTSEVN-- 152
Query: 375 SGRGCYKCGESG 410
CY+CGESG
Sbjct: 153 ----CYRCGESG 160
Score = 56.2 bits (134), Expect = 6e-08
Identities = 28/101 (27%), Positives = 40/101 (39%)
Frame = +3
Query: 48 ECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXX 227
+CY+CG+ GH +DCT+ K CY CGE GH++ +C +
Sbjct: 113 KCYSCGEFGHIQKDCTKVK----------CYRCGETGHVAINCSKTSEV----------- 151
Query: 228 XXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCT 350
NCY CG+SGH++ CT
Sbjct: 152 -------------------------NCYRCGESGHLARECT 167
Score = 51.6 bits (122), Expect = 2e-06
Identities = 30/105 (28%), Positives = 40/105 (38%), Gaps = 15/105 (14%)
Frame = +3
Query: 300 NNCYNCGQSGHISSYCTQG-SRNNGPSGRG--------------CYKCGESGAYG*RLCR 434
N C+ CG++GH + C G R G RG CY+CGESG
Sbjct: 4 NECFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESG-------- 55
Query: 435 WY*KTSQVLQLQPKWPHVKRMSKWTSEKTCYKCHNTGHIARDCHD 569
H+ + +K CY C GHIA+DC +
Sbjct: 56 ----------------HLAKDCDLQEDKACYNCGRGGHIAKDCKE 84
Score = 45.1 bits (105), Expect = 1e-04
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 349 HKAREIMVHQVVVVINAARVGHMARDCVD-GIEKQVKCYNCNQSGHMSRECPNGPAKK 519
H A++ + + N R GH+A+DC + E++ CYNC + GH++R+C + +K
Sbjct: 56 HLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 113
Score = 33.1 bits (74), Expect = 0.58
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 45 LECYNCGQSGHFSRDCT 95
+ CY CG+SGH +R+CT
Sbjct: 151 VNCYRCGESGHLARECT 167
Score = 32.3 bits (72), Expect = 1.00
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 454 KCYNCNQSGHMSRECPNGPAKKR 522
+C+ C ++GH +RECP G + R
Sbjct: 5 ECFKCGRTGHWARECPTGIGRGR 27
>sp|P53849|GIS2_YEAST Zinc-finger protein GIS2
Length = 153
Score = 76.6 bits (187), Expect = 5e-14
Identities = 44/172 (25%), Positives = 68/172 (39%)
Frame = +3
Query: 48 ECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXX 227
+CYNCG++GH +CT + C+NC + GHISR+CP+
Sbjct: 48 QCYNCGETGHVRSECTVQR----------CFNCNQTGHISRECPEPKKTSRFSKV----- 92
Query: 228 XXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGES 407
+CY CG H++ C + +G SG CY CG++
Sbjct: 93 -------------------------SCYKCGGPNHMAKDC---MKEDGISGLKCYTCGQA 124
Query: 408 GAYG*RLCRWY*KTSQVLQLQPKWPHVKRMSKWTSEKTCYKCHNTGHIARDC 563
G H+ R + +++ CY C+ TGHI++DC
Sbjct: 125 G------------------------HMSRDCQ--NDRLCYNCNETGHISKDC 150
Score = 59.3 bits (142), Expect = 8e-09
Identities = 24/46 (52%), Positives = 29/46 (63%)
Frame = +3
Query: 45 LECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQ 182
L+CY CGQ+GH SRDC + CYNC E GHIS+DCP+
Sbjct: 116 LKCYTCGQAGHMSRDCQNDRL---------CYNCNETGHISKDCPK 152
Score = 52.0 bits (123), Expect = 1e-06
Identities = 36/145 (24%), Positives = 56/145 (38%), Gaps = 2/145 (1%)
Frame = +3
Query: 135 CYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYN 314
CY CG+ GH++ DC CYN
Sbjct: 6 CYVCGKIGHLAEDCDSERL--------------------------------------CYN 27
Query: 315 CGQSGHISSYCTQGSRNNGPSGRGCYKCGESGAYG*R--LCRWY*KTSQVLQLQPKWPHV 488
C + GH+ + CT + CY CGE+G + R + +Q + + P
Sbjct: 28 CNKPGHVQTDCTM---PRTVEFKQCYNCGETGHVRSECTVQRCF-NCNQTGHISRECPEP 83
Query: 489 KRMSKWTSEKTCYKCHNTGHIARDC 563
K+ S++ S+ +CYKC H+A+DC
Sbjct: 84 KKTSRF-SKVSCYKCGGPNHMAKDC 107
Score = 51.2 bits (121), Expect = 2e-06
Identities = 27/102 (26%), Positives = 37/102 (36%)
Frame = +3
Query: 42 RLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXX 221
++ CY CG H ++DC + G CY CG+ GH+SRDC +
Sbjct: 91 KVSCYKCGGPNHMAKDCMKE----DGISGLKCYTCGQAGHMSRDCQNDRL---------- 136
Query: 222 XXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYC 347
CYNC ++GHIS C
Sbjct: 137 ----------------------------CYNCNETGHISKDC 150
Score = 45.1 bits (105), Expect = 1e-04
Identities = 20/33 (60%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Frame = +1
Query: 412 HMARDCV--DGIEKQVKCYNCNQSGHMSRECPN 504
HMA+DC+ DGI +KCY C Q+GHMSR+C N
Sbjct: 102 HMAKDCMKEDGISG-LKCYTCGQAGHMSRDCQN 133
Score = 43.9 bits (102), Expect = 3e-04
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +1
Query: 403 RVGHMARDCVDGIEKQVKCYNCNQSGHMSRECP 501
+ GHM+RDC + CYNCN++GH+S++CP
Sbjct: 123 QAGHMSRDC----QNDRLCYNCNETGHISKDCP 151
Score = 41.6 bits (96), Expect = 0.002
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 394 NAARVGHMARDCVDGIEKQVKCYNCNQSGHMSRECP 501
N GH+ +C +C+NCNQ+GH+SRECP
Sbjct: 51 NCGETGHVRSECT-----VQRCFNCNQTGHISRECP 81
Score = 37.7 bits (86), Expect = 0.024
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 403 RVGHMARDCVDGIEKQVKCYNCNQSGHMSREC 498
++GH+A DC + + CYNCN+ GH+ +C
Sbjct: 11 KIGHLAEDC----DSERLCYNCNKPGHVQTDC 38
Score = 33.9 bits (76), Expect = 0.34
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 394 NAARVGHMARDCVDGIEKQVK-CYNCNQSGHMSREC 498
N + GH+ DC + K CYNC ++GH+ EC
Sbjct: 27 NCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSEC 62
Score = 31.6 bits (70), Expect = 1.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTES 101
CYNC ++GH S+DC ++
Sbjct: 137 CYNCNETGHISKDCPKA 153
Score = 30.8 bits (68), Expect = 2.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 510 SEKTCYKCHNTGHIARDCHDD*F*FN 587
S+K CY C GH+A DC + +N
Sbjct: 2 SQKACYVCGKIGHLAEDCDSERLCYN 27
>sp|P36627|BYR3_SCHPO Cellular nucleic acid binding protein homolog
Length = 179
Score = 70.5 bits (171), Expect = 3e-12
Identities = 50/177 (28%), Positives = 61/177 (34%), Gaps = 1/177 (0%)
Frame = +3
Query: 36 QRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXX 215
Q+ CY CG +GH RDC S GA CY CG GHI+RDC N
Sbjct: 55 QQEKTCYACGTAGHLVRDCPSSPNPRQGAE---CYKCGRVGHIARDCRTNGQQSGGRFGG 111
Query: 216 XXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYK 395
NCY CG GH + CT G + CY
Sbjct: 112 HRSNM------------------------NCYACGSYGHQARDCTMGVK--------CYS 139
Query: 396 CGESGAYG*RLCRWY*KTSQVLQLQPKWPHVKRMSKWTSE-KTCYKCHNTGHIARDC 563
CG+ G H + S+ + CYKC+ GHIA +C
Sbjct: 140 CGKIG------------------------HRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 68.6 bits (166), Expect = 1e-11
Identities = 48/171 (28%), Positives = 61/171 (35%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 230
CYNCG++GH +R+CT + CYNC + GH + +C +
Sbjct: 19 CYNCGENGHQARECT---------KGSICYNCNQTGHKASECTE---------------- 53
Query: 231 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 410
CY CG +GH+ C S N G CYKCG G
Sbjct: 54 -------------------PQQEKTCYACGTAGHLVRDCP--SSPNPRQGAECYKCGRVG 92
Query: 411 AYG*RLCRWY*KTSQVLQLQPKWPHVKRMSKWTSEKTCYKCHNTGHIARDC 563
R CR + S R S CY C + GH ARDC
Sbjct: 93 HIA-RDCRTNGQQSG-----------GRFGGHRSNMNCYACGSYGHQARDC 131
Score = 41.2 bits (95), Expect = 0.002
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 349 HKAREIMVHQVVVVINAARVGHMARDCVDGIEKQVKCYNCNQSGHMSRECPNGP 510
H+ARE + N + GH A +C + +++ CY C +GH+ R+CP+ P
Sbjct: 27 HQARECTKGSICY--NCNQTGHKASECTEP-QQEKTCYACGTAGHLVRDCPSSP 77
Score = 38.5 bits (88), Expect = 0.014
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +1
Query: 409 GHMARDCVDGIEKQVKCYNCNQSGHMSREC 498
GH ARDC G VKCY+C + GH S EC
Sbjct: 125 GHQARDCTMG----VKCYSCGKIGHRSFEC 150
Score = 33.5 bits (75), Expect = 0.45
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 454 KCYNCNQSGHMSRECPNG 507
+CYNC ++GH +REC G
Sbjct: 18 RCYNCGENGHQARECTKG 35
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain containing protein 13
Length = 166
Score = 67.4 bits (163), Expect = 3e-11
Identities = 37/120 (30%), Positives = 47/120 (39%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 230
CYNCG+SGH ++DC + KR R CY CG GH++RDC +
Sbjct: 67 CYNCGRSGHIAKDCKDPKR----ERRQHCYTCGRLGHLARDCDRQ--------------- 107
Query: 231 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 410
CY+CG+ GHI C Q CY+CGE G
Sbjct: 108 ---------------------KEQKCYSCGKLGHIQKDCAQVK---------CYRCGEIG 137
Score = 64.3 bits (155), Expect = 2e-10
Identities = 48/186 (25%), Positives = 62/186 (33%), Gaps = 16/186 (8%)
Frame = +3
Query: 54 YNCGQSGHFSRDCTESKRYGSGARSGG----------------CYNCGENGHISRDCPQN 185
+ CG SGH++R C R G+G R GG CY CGE+G +++C
Sbjct: 7 FACGHSGHWARGCP---RGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC--- 60
Query: 186 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRN 365
N CYNCG+SGHI+ C R
Sbjct: 61 ----------------------------------VLLGNICYNCGRSGHIAKDCKDPKRE 86
Query: 366 NGPSGRGCYKCGESGAYG*RLCRWY*KTSQVLQLQPKWPHVKRMSKWTSEKTCYKCHNTG 545
+ CY CG G H+ R E+ CY C G
Sbjct: 87 R---RQHCYTCGRLG------------------------HLARDCDRQKEQKCYSCGKLG 119
Query: 546 HIARDC 563
HI +DC
Sbjct: 120 HIQKDC 125
Score = 55.5 bits (132), Expect = 1e-07
Identities = 37/171 (21%), Positives = 56/171 (32%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXXXXXXX 230
CY CG+SG +++C CYNCG +GHI++DC
Sbjct: 47 CYCCGESGRNAKNCV--------LLGNICYNCGRSGHIAKDCKD---------------- 82
Query: 231 XXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKCGESG 410
+CY CG+ GH++ C + CY CG+ G
Sbjct: 83 -----------------PKRERRQHCYTCGRLGHLARDCDRQKEQK------CYSCGKLG 119
Query: 411 AYG*RLCRWY*KTSQVLQLQPKWPHVKRMSKWTSEKTCYKCHNTGHIARDC 563
+ K ++ CY+C GH+A +C
Sbjct: 120 ---------------------------HIQKDCAQVKCYRCGEIGHVAINC 143
Score = 54.7 bits (130), Expect = 2e-07
Identities = 29/106 (27%), Positives = 40/106 (37%)
Frame = +3
Query: 36 QRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXXXXXX 215
+RR CY CG+ GH +RDC K CY+CG+ GHI +DC Q
Sbjct: 86 ERRQHCYTCGRLGHLARDCDRQKEQ-------KCYSCGKLGHIQKDCAQ----------- 127
Query: 216 XXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQ 353
CY CG+ GH++ C++
Sbjct: 128 ----------------------------VKCYRCGEIGHVAINCSK 145
Score = 42.0 bits (97), Expect = 0.001
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 14/101 (13%)
Frame = +3
Query: 309 YNCGQSGHISSYCTQGS---RNNGPSGRG-----------CYKCGESGAYG*RLCRWY*K 446
+ CG SGH + C +G R G GRG CY CGESG K
Sbjct: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNA--------K 58
Query: 447 TSQVLQLQPKWPHVKRMSKWTSEKTCYKCHNTGHIARDCHD 569
+L CY C +GHIA+DC D
Sbjct: 59 NCVLLG-----------------NICYNCGRSGHIAKDCKD 82
Score = 36.6 bits (83), Expect = 0.053
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 349 HKAREIMVHQVVVVINAARVGHMARDCVDGIEKQVKCYNCNQSGHMSREC 498
H AR+ + + ++GH+ +DC QVKCY C + GH++ C
Sbjct: 99 HLARDCDRQKEQKCYSCGKLGHIQKDCA-----QVKCYRCGEIGHVAINC 143
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 (Germline helicase 2)
Length = 974
Score = 65.9 bits (159), Expect = 8e-11
Identities = 37/129 (28%), Positives = 47/129 (36%)
Frame = +3
Query: 24 EQMSQRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXX 203
+ +R C+NC Q GH S DC E K+ CYNC + GH SRDCP+
Sbjct: 364 QDRGERNNNCFNCQQPGHRSNDCPEPKKE---REPRVCYNCQQPGHNSRDCPEERKpreG 420
Query: 204 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGR 383
C+NC GH S+ C + R
Sbjct: 421 RNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPE-------PPR 473
Query: 384 GCYKCGESG 410
GC+ CGE G
Sbjct: 474 GCFNCGEQG 482
Score = 56.2 bits (134), Expect = 6e-08
Identities = 47/192 (24%), Positives = 60/192 (31%), Gaps = 9/192 (4%)
Frame = +3
Query: 24 EQMSQRRLECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCPQNXXXXXX 203
+ +R C+NC Q GH S DC E K+ CYNC + GH SRDCP+
Sbjct: 250 QDRGERNNNCFNCQQPGHRSNDCPEPKK---EREPRVCYNCQQPGHNSRDCPEERKpreG 306
Query: 204 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGR 383
NN G+SG S S G G
Sbjct: 307 RNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNN----GESGFGSGGFGGNSNGFGSGGG 362
Query: 384 G---------CYKCGESGAYG*RLCRWY*KTSQVLQLQPKWPHVKRMSKWTSEKTCYKCH 536
G C+ C + G P K K + CY C
Sbjct: 363 GQDRGERNNNCFNCQQPG-----------------HRSNDCPEPK---KEREPRVCYNCQ 402
Query: 537 NTGHIARDCHDD 572
GH +RDC ++
Sbjct: 403 QPGHNSRDCPEE 414
Score = 49.3 bits (116), Expect = 8e-06
Identities = 20/45 (44%), Positives = 26/45 (57%)
Frame = +3
Query: 45 LECYNCGQSGHFSRDCTESKRYGSGARSGGCYNCGENGHISRDCP 179
++C+NC GH S +C E R GC+NCGE GH S +CP
Sbjct: 453 MKCFNCKGEGHRSAECPEPPR--------GCFNCGEQGHRSNECP 489
Score = 47.4 bits (111), Expect = 3e-05
Identities = 34/142 (23%), Positives = 45/142 (31%), Gaps = 30/142 (21%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTESKR-------------------YGSGARSG----------GCYN 143
CYNC Q GH SRDC E ++ +G G G C+N
Sbjct: 398 CYNCQQPGHNSRDCPEERKpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEERGPMKCFN 457
Query: 144 CGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQ 323
C GH S +CP+ C+NCG+
Sbjct: 458 CKGEGHRSAECPE-------------------------------------PPRGCFNCGE 480
Query: 324 SGHISSYCTQGSR-NNGPSGRG 386
GH S+ C ++ G G G
Sbjct: 481 QGHRSNECPNPAKpreGAEGEG 502
Score = 43.5 bits (101), Expect = 4e-04
Identities = 44/199 (22%), Positives = 60/199 (30%), Gaps = 28/199 (14%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTESK--RYGSGARSGGC--YNCGENGHISRDCPQNXXXXXXXXXXX 218
CYNC Q GH SRDC E + R G +GG + G G D
Sbjct: 284 CYNCQQPGHNSRDCPEERKpreGRNGFTGGSSGFGGGNGGGTGFDSGLTNGFGSGNNGES 343
Query: 219 XXXXXXXXXXXXXXXXXXXXXXXXXXXNNCYNCGQSGHISSYCTQGSRNNGPSGRGCYKC 398
NNC+NC Q GH S+ C + + P R CY C
Sbjct: 344 GFGSGGFGGNSNGFGSGGGGQDRGERNNNCFNCQQPGHRSNDCPEPKKEREP--RVCYNC 401
Query: 399 GESGAYG*RLCRWY*KTSQVLQLQPKWPHVKRM------------------------SKW 506
+ G + R C + + P R ++
Sbjct: 402 QQPG-HNSRDCP-----------EERKpreGRNGFTSGFGGGNDGGFGGGNAEGFGNNEE 449
Query: 507 TSEKTCYKCHNTGHIARDC 563
C+ C GH + +C
Sbjct: 450 RGPMKCFNCKGEGHRSAEC 468
Score = 38.9 bits (89), Expect = 0.011
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 394 NAARVGHMARDCVDGIEKQVK--CYNCNQSGHMSRECP 501
N + GH + DC + +++ CYNC Q GH SR+CP
Sbjct: 261 NCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCP 298
Score = 38.9 bits (89), Expect = 0.011
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 394 NAARVGHMARDCVDGIEKQVK--CYNCNQSGHMSRECP 501
N + GH + DC + +++ CYNC Q GH SR+CP
Sbjct: 375 NCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCP 412
Score = 38.5 bits (88), Expect = 0.014
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +1
Query: 394 NAARVGHMARDCVDGIEKQVKCYNCNQSGHMSRECPNGPAKKR 522
N GH + +C E C+NC + GH S ECPN PAK R
Sbjct: 457 NCKGEGHRSAECP---EPPRGCFNCGEQGHRSNECPN-PAKPR 495
Score = 33.5 bits (75), Expect = 0.45
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 442 EKQVKCYNCNQSGHMSRECPNGPAKKR 522
E+ C+NC Q GH S +CP P K+R
Sbjct: 254 ERNNNCFNCQQPGHRSNDCPE-PKKER 279
Score = 33.5 bits (75), Expect = 0.45
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 442 EKQVKCYNCNQSGHMSRECPNGPAKKR 522
E+ C+NC Q GH S +CP P K+R
Sbjct: 368 ERNNNCFNCQQPGHRSNDCPE-PKKER 393
Score = 32.7 bits (73), Expect = 0.76
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 451 VKCYNCNQSGHMSRECPNGP 510
+KC+NC GH S ECP P
Sbjct: 453 MKCFNCKGEGHRSAECPEPP 472
>sp|P27484|GRP2_NICSY Glycine-rich protein 2
Length = 214
Score = 62.8 bits (151), Expect = 7e-10
Identities = 25/51 (49%), Positives = 33/51 (64%), Gaps = 9/51 (17%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTESKRYGSGAR---------SGGCYNCGENGHISRDC 176
C+ CG+SGHF+RDC++S G G R GGCY CGE+GH +R+C
Sbjct: 159 CFKCGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGGCYKCGEDGHFAREC 209
Score = 47.4 bits (111), Expect = 3e-05
Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Frame = +3
Query: 108 YGSGARSGG--CYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 281
YG G GG C+ CGE+GH +RDC Q+
Sbjct: 148 YGGGGSGGGSGCFKCGESGHFARDCSQS--------------------GGGGGGGRFGGG 187
Query: 282 XXXXXXNNCYNCGQSGHISSYCTQGSR 362
CY CG+ GH + CT G R
Sbjct: 188 GGGGGGGGCYKCGEDGHFARECTSGGR 214
Score = 45.1 bits (105), Expect = 1e-04
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Frame = +3
Query: 300 NNCYNCGQSGHISSYCTQ----------GSRNNGPSGRGCYKCGESGAY 416
+ C+ CG+SGH + C+Q G G G GCYKCGE G +
Sbjct: 157 SGCFKCGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGGCYKCGEDGHF 205
Score = 34.7 bits (78), Expect = 0.20
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTESKR 107
CY CG+ GHF+R+CT R
Sbjct: 196 CYKCGEDGHFARECTSGGR 214
Score = 31.2 bits (69), Expect = 2.2
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 14/47 (29%)
Frame = +1
Query: 409 GHMARDCVD--------------GIEKQVKCYNCNQSGHMSRECPNG 507
GH ARDC G CY C + GH +REC +G
Sbjct: 166 GHFARDCSQSGGGGGGGRFGGGGGGGGGGGCYKCGEDGHFARECTSG 212
>sp|Q38896|GRP2B_ARATH Glycine-rich protein 2b (AtGRP2b)
Length = 201
Score = 55.8 bits (133), Expect = 8e-08
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 16/58 (27%)
Frame = +3
Query: 51 CYNCGQSGHFSRDCTE----------SKRYGSGARSGG------CYNCGENGHISRDC 176
C+ CG+ GH +R+C++ RYGSG GG CY+CGE+GH +RDC
Sbjct: 138 CFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDC 195
Score = 44.3 bits (103), Expect = 3e-04
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Frame = +3
Query: 111 GSGARSGG-----CYNCGENGHISRDCPQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 275
GSG R GG C+ CGE GH++R+C Q
Sbjct: 125 GSGGRGGGGGDNSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGL---- 180
Query: 276 XXXXXXXXNNCYNCGQSGHISSYCTQG 356
+CY+CG+SGH + CT G
Sbjct: 181 ---------SCYSCGESGHFARDCTSG 198
Score = 43.5 bits (101), Expect = 4e-04
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +3
Query: 300 NNCYNCGQSGHISSYCTQGSRN-NGPSGRGCYKCGESGAYG*RLCRWY*KTSQVLQLQPK 476
N+C+ CG+ GH++ C+QG +G G G Y G G G
Sbjct: 136 NSCFKCGEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGG------------------- 176
Query: 477 WPHVKRMSKWTSEKTCYKCHNTGHIARDC 563
+CY C +GH ARDC
Sbjct: 177 ----------GGGLSCYSCGESGHFARDC 195
Score = 38.5 bits (88), Expect = 0.014
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 45 LECYNCGQSGHFSRDCT 95
L CY+CG+SGHF+RDCT
Sbjct: 180 LSCYSCGESGHFARDCT 196
Score = 33.9 bits (76), Expect = 0.34
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 21/57 (36%)
Frame = +1
Query: 409 GHMARDCVDGIEKQ---------------------VKCYNCNQSGHMSRECPNGPAK 516
GHMAR+C G + CY+C +SGH +R+C +G A+
Sbjct: 145 GHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCTSGGAR 201
Score = 30.0 bits (66), Expect = 4.9
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 457 CYNCNQSGHMSRECPNG 507
C+ C + GHM+REC G
Sbjct: 138 CFKCGEPGHMARECSQG 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,638,943
Number of Sequences: 369166
Number of extensions: 1257434
Number of successful extensions: 7773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7220
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4877307000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)